View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16658_high_35 (Length: 273)
Name: NF16658_high_35
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 257
Target Start/End: Complemental strand, 42004004 - 42003756
Alignment:
| Q |
19 |
aaagtaccttttaaactaatttgatttaaaatgaaatctactttgtcaactttgtttttctcataaactccattatcctcgactaatcacatctctaaaa |
118 |
Q |
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| T |
42004004 |
aaagtaccttttaaactaatttgatttaaaatgaaatctactttgtcaactttatttttctcataaactccattatcctcgactaatcacatctctaaaa |
42003905 |
T |
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| Q |
119 |
agtactaaaacaacatggacgtgtgggttgtacttagaataattaaa----------ccaatcaaacaagaaaagaacgattaaatgtgttaagtaattc |
208 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42003904 |
agtactaaaacaacatggacgtgtgggttgtatttagaataattaaaccaaattaaaccaatcaaacaagaaaagaacgattaaatgtgttaagtaattc |
42003805 |
T |
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| Q |
209 |
aactagtttgaactaataataaagagttgaaagaccagattcaaattat |
257 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42003804 |
aactggtttgaactaataataaagagttgaaagattagattcaaattat |
42003756 |
T |
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