View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16658_high_39 (Length: 244)
Name: NF16658_high_39
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 126
Target Start/End: Complemental strand, 41014374 - 41014260
Alignment:
| Q |
12 |
catcatcaaccgagagaaatattgtagaaaaacacttcattatgnnnnnnnnatcgtgcaaatgtaccattttggttttaatccatgtgaaaaaaacttg |
111 |
Q |
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| T |
41014374 |
catcatcaaccgagagaaatattgtagaaaaacacttcattatgttttttttatcgtgcaaatgtaccattttggttttaatccatgtgaaaaaaacttg |
41014275 |
T |
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| Q |
112 |
tttgttttcaatcct |
126 |
Q |
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||||||||||||||| |
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| T |
41014274 |
tttgttttcaatcct |
41014260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 41014194 - 41014134
Alignment:
| Q |
182 |
aaaatttgtttatgttgaaattagctctagctcatgtggtgtataatattcaatttaattc |
242 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
41014194 |
aaaatttgtttatgttgaaattagctctagctcatatagtgtataatattcaatttaattc |
41014134 |
T |
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