View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16658_high_43 (Length: 237)

Name: NF16658_high_43
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16658_high_43
NF16658_high_43
[»] chr3 (7 HSPs)
chr3 (15-226)||(42470918-42471127)
chr3 (117-170)||(26919235-26919288)
chr3 (79-141)||(47342451-47342513)
chr3 (83-170)||(47495538-47495624)
chr3 (38-170)||(26952413-26952543)
chr3 (80-109)||(18090484-18090513)
chr3 (117-170)||(29078776-29078829)
[»] chr7 (5 HSPs)
chr7 (80-173)||(26576014-26576106)
chr7 (26-170)||(34519319-34519462)
chr7 (83-173)||(1706431-1706520)
chr7 (82-170)||(29235541-29235628)
chr7 (117-170)||(41966138-41966191)
[»] chr6 (4 HSPs)
chr6 (80-173)||(15134905-15134997)
chr6 (37-170)||(22747049-22747181)
chr6 (83-170)||(521303-521389)
chr6 (117-170)||(5188239-5188292)
[»] chr8 (7 HSPs)
chr8 (53-170)||(40978779-40978888)
chr8 (83-173)||(6148301-6148390)
chr8 (83-173)||(20765738-20765827)
chr8 (80-173)||(37127532-37127624)
chr8 (58-170)||(3691983-3692094)
chr8 (117-170)||(1598005-1598058)
chr8 (117-170)||(43429491-43429544)
[»] scaffold0355 (1 HSPs)
scaffold0355 (82-173)||(2648-2738)
[»] scaffold0039 (1 HSPs)
scaffold0039 (53-142)||(94233-94321)
[»] chr4 (8 HSPs)
chr4 (25-170)||(36284547-36284691)
chr4 (27-168)||(38476139-38476279)
chr4 (48-173)||(44515948-44516072)
chr4 (82-171)||(54183973-54184061)
chr4 (26-173)||(16529912-16530058)
chr4 (48-170)||(56192318-56192439)
chr4 (58-109)||(3533969-3534020)
chr4 (82-170)||(44707595-44707683)
[»] chr2 (4 HSPs)
chr2 (82-173)||(25322946-25323036)
chr2 (26-106)||(19494814-19494894)
chr2 (62-109)||(15463999-15464046)
chr2 (117-167)||(43652652-43652702)
[»] chr1 (5 HSPs)
chr1 (46-170)||(16255338-16255461)
chr1 (26-170)||(50378183-50378326)
chr1 (83-173)||(25388959-25389048)
chr1 (46-109)||(26451840-26451903)
chr1 (37-172)||(15342747-15342879)


Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 42470918 - 42471127
Alignment:
Q  15 ggtgtctgcctctatggaaaaaggtgactaaggaagcactctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnn 114  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |         
T  42470918 ggtgcctgcctctatggaaaa-ggtgactaaggaagcactctttctctcttcatttttcacaagcctcatttaataaatcttaataaaataaaca-tttt 42471015  T
Q  115 nngttgaaatgtaatgatatataattatatatgaaaactatttaataatttcttttaagctcgattgnnnnnnnnttggtgttcattaactattatcgta 214  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||    
T  42471016 ttgttgaaatgtaatgatatataattatatatgaaaactatttaataatttcttttaagctcgattgaaaaaaaattggtgttcattaactattatcgta 42471115  T
Q  215 aaataagtgatg 226  Q
    ||||||||||||    
T  42471116 aaataagtgatg 42471127  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 26919288 - 26919235
Alignment:
Q  117 gttgaaatgtaatgatatataattatatatgaaaactatttaataatttctttt 170  Q
    ||||||||||||||||||| |||||| ||||  | |||||||||||||||||||    
T  26919288 gttgaaatgtaatgatataaaattatttatgggacctatttaataatttctttt 26919235  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 47342451 - 47342513
Alignment:
Q  79 cctcatttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataatta 141  Q
    |||||||||||||||| |||| |||||||||       |||||||||||||||||||||||||    
T  47342451 cctcatttaataaatcataatgaaataaataaattttggttgaaatgtaatgatatataatta 47342513  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 47495538 - 47495624
Alignment:
Q  83 atttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactatttaataatttctttt 170  Q
    |||||||||||||||||||| ||||||       ||||||||||||||||||| |||||| |||   | |||||||||||||||||||    
T  47495538 atttaataaatcttaataaattaaataaatttt-gttgaaatgtaatgatataaaattatttatatgagctatttaataatttctttt 47495624  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 26952543 - 26952413
Alignment:
Q  38 gtgactaaggaagcactctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatata 137  Q
    ||||||| |||||||| || |||||||||  ||||  | | ||| |||||||||||| |||| |||||||||       ||||||||||||||||||| |    
T  26952543 gtgactatggaagcaccctctctctcttcgcttttacggaccct-atttaataaatcataatgaaataaataattttt-gttgaaatgtaatgatataaa 26952446  T
Q  138 attatatatgaaaactatttaataatttctttt 170  Q
    ||||| | | | | |||||||||||||||||||    
T  26952445 attatttgttagacctatttaataatttctttt 26952413  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 109
Target Start/End: Original strand, 18090484 - 18090513
Alignment:
Q  80 ctcatttaataaatcttaataaaataaata 109  Q
    ||||||||||||||||||||||||||||||    
T  18090484 ctcatttaataaatcttaataaaataaata 18090513  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 29078829 - 29078776
Alignment:
Q  117 gttgaaatgtaatgatatataattatatatgaaaactatttaataatttctttt 170  Q
    ||||||||||||||||||| |||||| ||||  | |||||||||||||| ||||    
T  29078829 gttgaaatgtaatgatatagaattatttatgggacctatttaataatttatttt 29078776  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 26576106 - 26576014
Alignment:
Q  80 ctcatttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactatttaataatttcttttaag 173  Q
    |||||||||||| |||||||||||||||||       ||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||||    
T  26576106 ctcatttaataattcttaataaaataaataaatttt-gttgaaatgtaatgatataaaattatttatgagatctatttaataatttcttttaag 26576014  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 34519462 - 34519319
Alignment:
Q  26 ctatggaaaaaggtgactaaggaagcactctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnnnngttgaaatg 125  Q
    ||||||| || |||| ||| |||||||| || ||||||||||||||||  ||| |  |||||||||||||||||||| || |||       ||| |||||    
T  34519462 ctatggagaatggtggctatggaagcaccctctctctcttcatttttcacaagtcctatttaataaatcttaataaactatata-aattttgttaaaatg 34519364  T
Q  126 taatgatatataattatatatgaaaactatttaataatttctttt 170  Q
    |||||||||| |||||| | ||  | |||||||||||||||||||    
T  34519363 taatgatatagaattatttgtgggacctatttaataatttctttt 34519319  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 1706520 - 1706431
Alignment:
Q  83 atttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactatttaataatttcttttaag 173  Q
    ||||||||||| |||||||||||||||       ||||||||||||||||||| |||||| | ||  | ||||||||||||||||||||||    
T  1706520 atttaataaatattaataaaataaataaatttt-gttgaaatgtaatgatataaaattatttgtgggacctatttaataatttcttttaag 1706431  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 29235628 - 29235541
Alignment:
Q  82 catttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactatttaataatttctttt 170  Q
    ||||||||||||||||||||||||||||        |||||||||||||||||| |||||| |||   | |||||||||||||||||||    
T  29235628 catttaataaatcttaataaaataaataaatttta-ttgaaatgtaatgatataaaattatttataggatctatttaataatttctttt 29235541  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 41966191 - 41966138
Alignment:
Q  117 gttgaaatgtaatgatatataattatatatgaaaactatttaataatttctttt 170  Q
    ||||||||||||||||||| |||||| |||||   |||||||||||||||||||    
T  41966191 gttgaaatgtaatgatataaaattatttatgagtcctatttaataatttctttt 41966138  T

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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 15134997 - 15134905
Alignment:
Q  80 ctcatttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactatttaataatttcttttaag 173  Q
    ||||||||||||||||||||||||||||||       ||||||||||||||||||| |||||| | || || ||||||||||||||||||||||    
T  15134997 ctcatttaataaatcttaataaaataaataaatttt-gttgaaatgtaatgatataaaattatttgtggaatctatttaataatttcttttaag 15134905  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 37 - 170
Target Start/End: Original strand, 22747049 - 22747181
Alignment:
Q  37 ggtgactaaggaagcactctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatat 136  Q
    |||| ||| |||||||| || ||||||||||||||||    | | |||||||||||| |||||||||||||||       |||||||||||||||||||     
T  22747049 ggtggctatggaagcaccctctctctcttcatttttcatgggtcacatttaataaatattaataaaataaataaaattt-gttgaaatgtaatgatataa 22747147  T
Q  137 aattatatatgaaaactatttaataatttctttt 170  Q
    |||||| | | | | |||||||||||||||||||    
T  22747148 aattatttgtaagacctatttaataatttctttt 22747181  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 521303 - 521389
Alignment:
Q  83 atttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactatttaataatttctttt 170  Q
    |||||||||||||||||||| ||||||       |||||||||||||||||||||||||| | ||  | |||||||||||||||||||    
T  521303 atttaataaatcttaataaattaaataaatttt-gttgaaatgtaatgatatataattatttgtgggatctatttaataatttctttt 521389  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 5188239 - 5188292
Alignment:
Q  117 gttgaaatgtaatgatatataattatatatgaaaactatttaataatttctttt 170  Q
    ||||||||||||||||||| ||||   | || ||||||||||||||||||||||    
T  5188239 gttgaaatgtaatgatataaaatttattgtggaaactatttaataatttctttt 5188292  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 170
Target Start/End: Original strand, 40978779 - 40978888
Alignment:
Q  53 ctctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaac 152  Q
    |||| ||||||||||||||| ||  | ||||||||||||||||||||||||||||         ||||||||||||||||||| |||||| | || || |    
T  40978779 ctctctctctcttcattttttgg--gtctcatttaataaatcttaataaaataaa------attgttgaaatgtaatgatataaaattatttgtggaacc 40978870  T
Q  153 tatttaataatttctttt 170  Q
    ||||||||||||||||||    
T  40978871 tatttaataatttctttt 40978888  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 6148390 - 6148301
Alignment:
Q  83 atttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactatttaataatttcttttaag 173  Q
    |||||||||||||||||||||||||||       |||||||| |||||||||| |||||| | ||  | ||||||||||||||||||||||    
T  6148390 atttaataaatcttaataaaataaataaatttt-gttgaaatttaatgatatagaattatttgtgggacctatttaataatttcttttaag 6148301  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 20765738 - 20765827
Alignment:
Q  83 atttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactatttaataatttcttttaag 173  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||| |||||| | ||   ||||||||||| |||||||||||    
T  20765738 atttaataaatcttaataaaataaataaatttt-gttgaaatgtaatgatataaaattatttgtgggcactatttaatattttcttttaag 20765827  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 37127624 - 37127532
Alignment:
Q  80 ctcatttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactatttaataatttcttttaag 173  Q
    ||||||||||| ||||||||||||||||||       ||||||||||||||||||| |||||| | ||  | |||||||||||||| |||||||    
T  37127624 ctcatttaatagatcttaataaaataaataaatttt-gttgaaatgtaatgatataaaattatttgtgggatctatttaataatttattttaag 37127532  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 58 - 170
Target Start/End: Original strand, 3691983 - 3692094
Alignment:
Q  58 tctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactattt 157  Q
    |||||||| |||||||| |   |||||||||||||| ||||||| |||||||       |||||||| |||||||||| |||||| |||  ||||| |||    
T  3691983 tctctcttaatttttcgcagatctcatttaataaatattaataagataaataaatttt-gttgaaatctaatgatatagaattatttattgaaactgttt 3692081  T
Q  158 aataatttctttt 170  Q
    |||||||||||||    
T  3692082 aataatttctttt 3692094  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 1598058 - 1598005
Alignment:
Q  117 gttgaaatgtaatgatatataattatatatgaaaactatttaataatttctttt 170  Q
    ||||||||||||||||||| |||||| | ||  | |||||||||||||||||||    
T  1598058 gttgaaatgtaatgatataaaattatttgtgggacctatttaataatttctttt 1598005  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 43429491 - 43429544
Alignment:
Q  117 gttgaaatgtaatgatatataattatatatgaaaactatttaataatttctttt 170  Q
    ||||||||||||||||||| |||||| | || ||  ||||||||||||||||||    
T  43429491 gttgaaatgtaatgatatagaattatttgtggaacttatttaataatttctttt 43429544  T

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Target: scaffold0355 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 173
Target Start/End: Complemental strand, 2738 - 2648
Alignment:
Q  82 catttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactatttaataatttcttttaag 173  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||| |||||  |||| |  ||||||||||||||||||||||    
T  2738 catttaataaatcttaataaaataaataaatttt-gttgaaatgtaatgatataaaattagttatggaccctatttaataatttcttttaag 2648  T

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Target: scaffold0039 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 94321 - 94233
Alignment:
Q  53 ctctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattat 142  Q
    |||| ||||||||||||||||  ||| || |||||||||||||||||||||||||||       ||||||||||||||||||| ||||||    
T  94321 ctctctctctcttcatttttcataagtcttatttaataaatcttaataaaataaata-aattttgttgaaatgtaatgatataaaattat 94233  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 36284691 - 36284547
Alignment:
Q  25 tctatggaaaaaggtgactaaggaagcactctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnnnngttgaaat 124  Q
    |||||||| || |||| ||| |||||||| || ||||||||||||||| |   | |  |||||||||||||||||||| ||||||       ||||||||    
T  36284691 tctatggagaagggtgcctatggaagcaccctctctctcttcattttttgttggtcatatttaataaatcttaataaattaaataaatttt-gttgaaat 36284593  T
Q  125 gtaatgatatataattatatatgaaaactatttaataatttctttt 170  Q
    ||||||||||| |||||| | ||  | |||||||||||||||||||    
T  36284592 gtaatgatatagaattatttgtgggacctatttaataatttctttt 36284547  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 168
Target Start/End: Complemental strand, 38476279 - 38476139
Alignment:
Q  27 tatggaaaaaggtgactaaggaagcactctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnnnngttgaaatgt 126  Q
    |||||| |||||||  || ||||||||  | ||||||||||||||||    ||| ||||||||||||||||||||||||||||       ||||||||||    
T  38476279 tatggagaaaggtggttatggaagcacgttctctctcttcatttttcatgggccacatttaataaatcttaataaaataaata-aattttgttgaaatgt 38476181  T
Q  127 aatgatatataattatatatgaaaactatttaataatttctt 168  Q
    ||||||||| ||  || ||||  | |||||||||||||||||    
T  38476180 aatgatataaaaaaatttatgggacctatttaataatttctt 38476139  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 44516072 - 44515948
Alignment:
Q  48 aagcactctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatg 147  Q
    |||||| |||||||||||||||||||    | | |||||||||||| |||||||||||||||       ||||||||||||||||||| ||||||   ||    
T  44516072 aagcaccctttctctcttcatttttcatgggtcccatttaataaatattaataaaataaataaatttt-gttgaaatgtaatgatataaaattattagtg 44515974  T
Q  148 aaaactatttaataatttcttttaag 173  Q
      | ||||||||||||||||||||||    
T  44515973 ggatctatttaataatttcttttaag 44515948  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 54184061 - 54183973
Alignment:
Q  82 catttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactatttaataatttctttta 171  Q
    |||||||||||||||||||| |||||||       |||||||||||||||||||||||||| ||||  | |||||||||||||| |||||    
T  54184061 catttaataaatcttaataatataaataaaattt-gttgaaatgtaatgatatataattatttatgggacctatttaataatttttttta 54183973  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 173
Target Start/End: Original strand, 16529912 - 16530058
Alignment:
Q  26 ctatggaaaaaggtgactaaggaagcactctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnnnngttgaaatg 125  Q
    ||||||| || |||| ||| ||||||||  | ||||||||||||||||    | | | ||||||||||||||||||||||||||       |||||||||    
T  16529912 ctatggagaatggtggctatggaagcaccatctctctcttcatttttcatgggtcccttttaataaatcttaataaaataaataaatttt-gttgaaatg 16530010  T
Q  126 taatgatatataattatatatgaaaactatttaataatttcttttaag 173  Q
    |||||||||| |||||| | ||  |  |||||||||||||||||||||    
T  16530011 taatgatataaaattatttgtgggacttatttaataatttcttttaag 16530058  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 170
Target Start/End: Original strand, 56192318 - 56192439
Alignment:
Q  48 aagcactctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatg 147  Q
    |||||| || ||||||| ||||||| |  ||  ||||||||||||||||||||||||||| |       |||||| ||| |||||||| |||||||| ||    
T  56192318 aagcaccctctctctctccattttttgtgagtttcatttaataaatcttaataaaataaagaaatttt-gttgaattgtgatgatatagaattatatgtg 56192416  T
Q  148 aaaactatttaataatttctttt 170  Q
     || |||||||||||||||||||    
T  56192417 gaacctatttaataatttctttt 56192439  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 3534020 - 3533969
Alignment:
Q  58 tctctcttcatttttcggaagcctcatttaataaatcttaataaaataaata 109  Q
    ||||||||||||||||    | ||||||||||||||||||||||||||||||    
T  3534020 tctctcttcatttttcatgggtctcatttaataaatcttaataaaataaata 3533969  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 170
Target Start/End: Complemental strand, 44707683 - 44707595
Alignment:
Q  82 catttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactatttaataatttctttt 170  Q
    ||||||||||||| |||| |||||||||       |||||||||||||||||||||||||| | ||  | ||||||  |||||||||||    
T  44707683 catttaataaatcataatgaaataaataaatttttgttgaaatgtaatgatatataattatttgtgggatctattttgtaatttctttt 44707595  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 25322946 - 25323036
Alignment:
Q  82 catttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactatttaataatttcttttaag 173  Q
    ||||||||||||||||||||||||||||       ||||||||||||||||||| |||||| | ||  |  |||||||||||||||||||||    
T  25322946 catttaataaatcttaataaaataaataaatttt-gttgaaatgtaatgatataaaattatttgtgggacatatttaataatttcttttaag 25323036  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 106
Target Start/End: Original strand, 19494814 - 19494894
Alignment:
Q  26 ctatggaaaaaggtgactaaggaagcactctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataa 106  Q
    ||||||| || |||| ||| |||||||||||  |||||||||||||||   || | |||||||||||||||||||||||||    
T  19494814 ctatggagaatggtggctatggaagcactctccctctcttcatttttcatgagtcccatttaataaatcttaataaaataa 19494894  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 15463999 - 15464046
Alignment:
Q  62 tcttcatttttcggaagcctcatttaataaatcttaataaaataaata 109  Q
    ||||||||||||| | | |||||||||||||| |||||||||||||||    
T  15463999 tcttcatttttcgtaggtctcatttaataaattttaataaaataaata 15464046  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 43652652 - 43652702
Alignment:
Q  117 gttgaaatgtaatgatatataattatatatgaaaactatttaataatttct 167  Q
    ||||||||||||||||||| |||||| ||||| | ||||||| ||||||||    
T  43652652 gttgaaatgtaatgatataaaattatttatgatatctatttagtaatttct 43652702  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 16255461 - 16255338
Alignment:
Q  46 ggaagcactctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatata 145  Q
    |||||||| || | |||||||| |||||  ||| | ||||||||||||||||||||||||||||       ||||||||| ||||||||| |||||| |     
T  16255461 ggaagcaccctctttctcttcaattttcacaagtcccatttaataaatcttaataaaataaata-aattttgttgaaatggaatgatatagaattatttg 16255363  T
Q  146 tgaaaactatttaataatttctttt 170  Q
    ||| |   |||||||||||||||||    
T  16255362 tgagacaaatttaataatttctttt 16255338  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 170
Target Start/End: Complemental strand, 50378326 - 50378183
Alignment:
Q  26 ctatggaaaaaggtgactaaggaagcactctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnnnngttgaaatg 125  Q
    ||||||| || |||| ||| |||||||| ||  |||||||||||||||    | |  ||||||||||| |||||||||||||||       |||||||||    
T  50378326 ctatggagaagggtggctatggaagcaccctcactctcttcatttttcatgggtcatatttaataaatattaataaaataaataaatttt-gttgaaatg 50378228  T
Q  126 taatgatatataattatatatgaaaactatttaataatttctttt 170  Q
    |||||||||| |||||| |||   | |||||||||||||||||||    
T  50378227 taatgatataaaattatttataggacctatttaataatttctttt 50378183  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 173
Target Start/End: Complemental strand, 25389048 - 25388959
Alignment:
Q  83 atttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatataattatatatgaaaactatttaataatttcttttaag 173  Q
    ||||||||||| |||||||||||||||       ||||||||||||||||||| |||||| |||   | ||||||| ||||||||||||||    
T  25389048 atttaataaattttaataaaataaataaatttt-gttgaaatgtaatgatataaaattatttataggacctatttagtaatttcttttaag 25388959  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 26451903 - 26451840
Alignment:
Q  46 ggaagcactctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaata 109  Q
    |||||||| || ||||||||||||||||    || |||||||||||||||||||||||| ||||    
T  26451903 ggaagcaccctctctctcttcatttttcatgggcttcatttaataaatcttaataaaattaata 26451840  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 15342879 - 15342747
Alignment:
Q  37 ggtgactaaggaagcactctttctctcttcatttttcggaagcctcatttaataaatcttaataaaataaatannnnnnngttgaaatgtaatgatatat 136  Q
    |||| ||| |||||||||||  |||||||||||||||    ||| |||||||||||| |||||||||||||||       |||||||| ||||||||||     
T  15342879 ggtggctatggaagcactct--ctctcttcatttttcatgggccacatttaataaattttaataaaataaata-aattttgttgaaatataatgatataa 15342783  T
Q  137 aattatatatgaaaactatttaataatttcttttaa 172  Q
    |||||| | |   | |||||||||||||| ||||||    
T  15342782 aattatttgtaggacctatttaataatttattttaa 15342747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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