View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16658_high_5 (Length: 538)
Name: NF16658_high_5
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 43621966 - 43621664
Alignment:
| Q |
15 |
aagaatggaaaagcgttcaataagctataattgaataaaatggaagggtataataatatgatgtgtacctaagtaggagcgctaagaagaaggtgataac |
114 |
Q |
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| T |
43621966 |
aagaatggaaaagcgttcaataagctataattgaataaaatggaagggtataata---tgatgtgtacctaagtaggagcgctaagaagaaggtgataac |
43621870 |
T |
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| Q |
115 |
tggaagacagtttgtggaagcagctgccaaagttggagaggtgtaaatcagaccaacaccatttaaatccatggccatagtaatcctgaaatttaattca |
214 |
Q |
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| T |
43621869 |
tggaagacagtttgtggaagcagctgccaaagttggagaggtgtaaatcagaccaacaccatttaaatccatggccatagtaatcctgaaatttaattca |
43621770 |
T |
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| Q |
215 |
aacacaacaacccactacgtttaaatcatatatacctaattaattaatgatgtcatgcaaattaatatgtagacatgtatactcaaatatcgagttatgg |
314 |
Q |
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| T |
43621769 |
aacacaacaacccactacgtttaaatcatatatacctaattaattaatgatgtcatgtaaattaatatgttgacatgtatactcaaatatcgagttatgg |
43621670 |
T |
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| Q |
315 |
ataagg |
320 |
Q |
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|||||| |
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| T |
43621669 |
ataagg |
43621664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 467 - 519
Target Start/End: Complemental strand, 43621496 - 43621444
Alignment:
| Q |
467 |
aagagcgattgatttttgttgtgaaaggaagttttagcgaattattggatatt |
519 |
Q |
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| T |
43621496 |
aagagcgaatgatttttgttgtgaaaggtagttttagcgaattattgtatatt |
43621444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 451
Target Start/End: Complemental strand, 43621554 - 43621514
Alignment:
| Q |
411 |
caaagtattgaaagaaattgactacattagtttagcgaatg |
451 |
Q |
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| T |
43621554 |
caaagtattgaaagaaattgactacattagtttagcaaatg |
43621514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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