View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16658_high_8 (Length: 517)

Name: NF16658_high_8
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16658_high_8
NF16658_high_8
[»] chr5 (9 HSPs)
chr5 (248-497)||(26834422-26834671)
chr5 (319-494)||(26777932-26778103)
chr5 (381-494)||(26791804-26791917)
chr5 (252-497)||(26729221-26729474)
chr5 (17-240)||(26792104-26792334)
chr5 (381-484)||(26745384-26745485)
chr5 (244-319)||(26792000-26792075)
chr5 (248-319)||(26777835-26777906)
chr5 (279-319)||(26745587-26745627)
[»] scaffold0093 (1 HSPs)
scaffold0093 (244-494)||(20778-21024)
[»] chr3 (10 HSPs)
chr3 (321-491)||(13042230-13042396)
chr3 (321-491)||(13050307-13050473)
chr3 (393-453)||(30137391-30137451)
chr3 (393-453)||(30143520-30143580)
chr3 (393-453)||(30146942-30147002)
chr3 (185-240)||(13042069-13042124)
chr3 (185-240)||(13050146-13050201)
chr3 (404-454)||(12109440-12109490)
chr3 (393-455)||(30069332-30069394)
chr3 (393-453)||(30132573-30132633)
[»] scaffold0416 (3 HSPs)
scaffold0416 (319-486)||(7650-7813)
scaffold0416 (244-319)||(7549-7624)
scaffold0416 (17-244)||(7294-7524)
[»] scaffold0112 (8 HSPs)
scaffold0112 (17-240)||(25780-26000)
scaffold0112 (315-494)||(26124-26302)
scaffold0112 (390-494)||(17487-17591)
scaffold0112 (248-314)||(41177-41243)
scaffold0112 (248-319)||(26031-26102)
scaffold0112 (17-76)||(40835-40894)
scaffold0112 (40-95)||(40943-40998)
scaffold0112 (279-319)||(17339-17379)
[»] scaffold0233 (2 HSPs)
scaffold0233 (319-494)||(17394-17565)
scaffold0233 (248-319)||(17590-17661)
[»] scaffold0759 (3 HSPs)
scaffold0759 (381-486)||(1999-2106)
scaffold0759 (17-240)||(2291-2501)
scaffold0759 (248-319)||(2189-2260)
[»] chr7 (2 HSPs)
chr7 (404-476)||(10621936-10622008)
chr7 (419-477)||(15126352-15126410)


Alignment Details
Target: chr5 (Bit Score: 164; Significance: 2e-87; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 248 - 497
Target Start/End: Complemental strand, 26834671 - 26834422
Alignment:
Q  248 atctatgcatataatgtatatatttaggaatgtttggtattaaattgagcatgtagtatactaattttt-cataacatataaatatatcggtgagaaaga 346  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  26834671 atctatgcatataacgtatatatttaggaaagtttggtattaaattgagcatgtagtatactaattttttcataacatataaataaatcggtgagaaaga 26834572  T
Q  347 tgggcgcaatgttnnnnnnnnnntatacatacagcagaatgtcgtgagcatgaaaacagccaaagtagcgatcttaacataagtcattgtttgatcaaaa 446  Q
    || ||||||||||          |||||||||||||||||  ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  26834571 tgagcgcaatgttaaaaaaaaa-tatacatacagcagaattgcgtgagcatgaaaacagccaaagtagcaagcttaacataagtcattgtttgatcaaaa 26834473  T
Q  447 gaaagaataagctaaaattatttgttatgaacttagcttaatgttgcaaca 497  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||| ||||    
T  26834472 gaaagaataagctaaaattatttgatatgaacttagcttagtgttgtaaca 26834422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 319 - 494
Target Start/End: Original strand, 26777932 - 26778103
Alignment:
Q  319 taacatataaatatatcggtgagaaagatgggcgcaatgttnnnnnnnnnntatacatacagcagaatgtcgtgagcatgaaaacagccaaagtagcgat 418  Q
    |||||||||||||||||||||||||||||| ||||||||||          |||||||||||   ||||| ||||||||||| |||||||||||| | |     
T  26777932 taacatataaatatatcggtgagaaagatgagcgcaatgttaaaaaaaaa-tatacatacag---aatgtggtgagcatgaagacagccaaagtaacaag 26778027  T
Q  419 cttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgttatgaacttagcttaatgttgca 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  26778028 cttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttattatgaacttagcttagtgttgca 26778103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 381 - 494
Target Start/End: Complemental strand, 26791917 - 26791804
Alignment:
Q  381 cagaatgtcgtgagcatgaaaacagccaaagtagcgatcttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgttatgaactt 480  Q
    |||||||| ||||||||||| ||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26791917 cagaatgtggtgagcatgaagacagccaaattagcaagcttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgttatgaactt 26791818  T
Q  481 agcttaatgttgca 494  Q
    |||||| |||||||    
T  26791817 agcttagtgttgca 26791804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 252 - 497
Target Start/End: Complemental strand, 26729474 - 26729221
Alignment:
Q  252 atgcatataatgtatatatttaggaatgtttggtattaaattgagcatgtagtatactaatttttca-----taaca--------tataaatatatcggt 338  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||     ||| |        | ||| |||||||||    
T  26729474 atgcatataaagcatatatttaggaaagtttggtattaaattgagcatgtagtatattaatttttcattgattaaaagtatagattctaattatatcggt 26729375  T
Q  339 gagaaagatgggcgcaatgttnnnnnnnnnntatacatacagcagaatgtcgtgagcatgaaaacagccaaagtagcgatcttaacataagtcattgttt 438  Q
    | ||||||||  | |||||||          ||||||||||   |||||| ||||||||||| |||||||||||||||| |||||||||||||||| |||    
T  26729374 gggaaagatgaacacaatgtt--aaaaaaaatatacataca---gaatgtggtgagcatgaagacagccaaagtagcgagcttaacataagtcattcttt 26729280  T
Q  439 gatcaaaagaaagaataagctaaaattatttgttatgaacttagcttaatgttgcaaca 497  Q
    |||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  26729279 gatcaaaataaagaataagctaaaattatttgtgatgaacttagcttagtgttgcaaca 26729221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 26792334 - 26792104
Alignment:
Q  17 attcttaagtagcaatatccaaagccatcttcaagtactccttttcattagagttagaggtcatcgcccgtatagtcaatgcacctcattcctaaatccg 116  Q
    |||||||||| ||||| |||||||||||||||||||| |  ||||||||||||||||||| |||| |||||||||||||||||   |||||| ||||  |    
T  26792334 attcttaagtggcaatttccaaagccatcttcaagtagtttttttcattagagttagaggccatcacccgtatagtcaatgcaggacattcc-aaatatg 26792236  T
Q  117 t----aaggacacaacgacacgttatggagttgccgcatggcttcgactcaaatattgaacaacccataccgtatcttgcacattgcaatgcttcaacgg 212  Q
    |    |  ||||||  ||||||||||||| ||||||||||| ||||||||||||| || ||||  |||||| ||||||||||| |||  ||||||||||     
T  26792235 tacaaactgacacactgacacgttatggaattgccgcatggattcgactcaaatactgcacaaggcataccatatcttgcacaatgccttgcttcaacgt 26792136  T
Q  213 tcttc----atctggatgatcactgcaaatgg 240  Q
    |||||     |||||||||| |||||||||||    
T  26792135 tcttcgtctgtctggatgattactgcaaatgg 26792104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 381 - 484
Target Start/End: Complemental strand, 26745485 - 26745384
Alignment:
Q  381 cagaatgtcgtgagcatgaaaacagccaaagtagcgatcttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgttatgaactt 480  Q
    |||||| | ||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||    
T  26745485 cagaatatagtgagcatgaagacagccaaagtagcaagcttaacataagtcattgtttgatcaaaagaaagaataagct--aatcatttgttatgaactt 26745388  T
Q  481 agct 484  Q
    ||||    
T  26745387 agct 26745384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 244 - 319
Target Start/End: Complemental strand, 26792075 - 26792000
Alignment:
Q  244 acatatctatgcatataatgtatatatttaggaatgtttggtattaaattgagcatgtagtatactaatttttcat 319  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26792075 acatatctatgcatataacgtatatatttaggaaagtttggtattaaattgagcatgtagtatactaatttttcat 26792000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 248 - 319
Target Start/End: Original strand, 26777835 - 26777906
Alignment:
Q  248 atctatgcatataatgtatatatttaggaatgtttggtattaaattgagcatgtagtatactaatttttcat 319  Q
    |||||||||||||| ||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||    
T  26777835 atctatgcatataacgtatatatttaggagagtttggtattaaattgagaatgtagtatactaatttttcat 26777906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 26745627 - 26745587
Alignment:
Q  279 gtttggtattaaattgagcatgtagtatactaatttttcat 319  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  26745627 gtttggcattaaattgagcatgtagtataataatttttcat 26745587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 158; Significance: 8e-84; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 244 - 494
Target Start/End: Complemental strand, 21024 - 20778
Alignment:
Q  244 acatatctatgcatataatgtatatatttaggaatgtttggtattaaattgagcatgtagtatactaatttttcataacatataaatatatcggtgagaa 343  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21024 acatatctatgcatataacgtatatatttaggaaagtttggtattaaattgagcatgtagtatactaatttttcataacatataaatatatcggtgagaa 20925  T
Q  344 agatgggcgcaatgttnnnnnnnnnntatacatacagcagaatgtcgtgagcatgaaaacagccaaagtagcgatcttaacataagtcattgtttgatca 443  Q
    ||||| ||||||| ||          ||||||||   |||||||| ||||||||||| |||||||||||| | | |||||||||||||||||||||||||    
T  20924 agatgagcgcaatatt-aaaaaaaaatatacata---cagaatgtggtgagcatgaagacagccaaagtaacaagcttaacataagtcattgtttgatca 20829  T
Q  444 aaagaaagaataagctaaaattatttgttatgaacttagcttaatgttgca 494  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  20828 aaagaaataataagctaaaattatttgttatgaacttagcttagtgttgca 20778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 321 - 491
Target Start/End: Original strand, 13042230 - 13042396
Alignment:
Q  321 acatataaatatatcggtgagaaagatgggcgcaatgttnnnnnnnnnntatacatacagcagaatgtcgtgagcatgaaaacagccaaagtagcgatct 420  Q
    |||||||||||||||||||||||||||| ||||||||||          |||||||||||   |||||||||||||||||||||||||||||||| | ||    
T  13042230 acatataaatatatcggtgagaaagatgagcgcaatgttaaaaaacaa-tatacatacag---aatgtcgtgagcatgaaaacagccaaagtagcaagct 13042325  T
Q  421 taacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgttatgaacttagcttaatgtt 491  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||    
T  13042326 taacataagtcattgtttgatcaaaagaaataataagctaaaattatttattatgaacttagcttagtgtt 13042396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 321 - 491
Target Start/End: Original strand, 13050307 - 13050473
Alignment:
Q  321 acatataaatatatcggtgagaaagatgggcgcaatgttnnnnnnnnnntatacatacagcagaatgtcgtgagcatgaaaacagccaaagtagcgatct 420  Q
    |||||||||||||||||||||||||||| ||||||||||          |||||||||||   |||||||||||||||||||||||||||||||| | ||    
T  13050307 acatataaatatatcggtgagaaagatgagcgcaatgttaaaaaacaa-tatacatacag---aatgtcgtgagcatgaaaacagccaaagtagcaagct 13050402  T
Q  421 taacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgttatgaacttagcttaatgtt 491  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||    
T  13050403 taacataagtcattgtttgatcaaaagaaataataagctaaaattatttattatgaacttagcttagtgtt 13050473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 30137391 - 30137451
Alignment:
Q  393 agcatgaaaacagccaaagtagcgatcttaacataagtcattgtttgatcaaaagaaagaa 453  Q
    |||| ||| |||||||||| ||| | |||||||||||||||||||  ||||||||||||||    
T  30137391 agcaagaagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaa 30137451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 30143520 - 30143580
Alignment:
Q  393 agcatgaaaacagccaaagtagcgatcttaacataagtcattgtttgatcaaaagaaagaa 453  Q
    |||| ||| |||||||||| ||| | |||||||||||||||||||  ||||||||||||||    
T  30143520 agcaagaagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaa 30143580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 30146942 - 30147002
Alignment:
Q  393 agcatgaaaacagccaaagtagcgatcttaacataagtcattgtttgatcaaaagaaagaa 453  Q
    |||| ||| |||||||||| ||| | |||||||||||||||||||  ||||||||||||||    
T  30146942 agcaagaagacagccaaaggagctagcttaacataagtcattgttctatcaaaagaaagaa 30147002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 13042069 - 13042124
Alignment:
Q  185 tatcttgcacattgcaatgcttcaacggtcttcatctggatgatcactgcaaatgg 240  Q
    ||||||||||| |||  |||||||||| |||||||||||| ||| |||||||||||    
T  13042069 tatcttgcacaatgccttgcttcaacgttcttcatctggacgattactgcaaatgg 13042124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 240
Target Start/End: Original strand, 13050146 - 13050201
Alignment:
Q  185 tatcttgcacattgcaatgcttcaacggtcttcatctggatgatcactgcaaatgg 240  Q
    ||||||||||| |||  |||||||||| |||||||||||| ||| |||||||||||    
T  13050146 tatcttgcacaatgccttgcttcaacgttcttcatctggacgattactgcaaatgg 13050201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 12109490 - 12109440
Alignment:
Q  404 agccaaagtagcgatcttaacataagtcattgtttgatcaaaagaaagaat 454  Q
    ||||||||||  || |||||||||||||||||||| |||| ||||||||||    
T  12109490 agccaaagtaatgagcttaacataagtcattgtttaatcagaagaaagaat 12109440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 455
Target Start/End: Original strand, 30069332 - 30069394
Alignment:
Q  393 agcatgaaaacagccaaagtagcgatcttaacataagtcattgtttgatcaaaagaaagaata 455  Q
    |||| ||| ||||| |||| ||| | ||||||||||| ||||| |||||||||||||||||||    
T  30069332 agcaagaagacagcaaaaggagctagcttaacataagccattgattgatcaaaagaaagaata 30069394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 453
Target Start/End: Original strand, 30132573 - 30132633
Alignment:
Q  393 agcatgaaaacagccaaagtagcgatcttaacataagtcattgtttgatcaaaagaaagaa 453  Q
    ||||| || ||||| |||| ||| | |||||||||||||||||||  ||||||||||||||    
T  30132573 agcataaagacagcaaaaggagcaagcttaacataagtcattgttctatcaaaagaaagaa 30132633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 319 - 486
Target Start/End: Original strand, 7650 - 7813
Alignment:
Q  319 taacatataaatatatcggtgagaaagatgggcgcaatgttnnnnnnnnnntatacatacagcagaatgtcgtgagcatgaaaacagccaaagtagcgat 418  Q
    |||||||||||||||||||||||||||||| ||||||||||          |||||||||||   ||||| ||||||||||| ||||||||| |||| |     
T  7650 taacatataaatatatcggtgagaaagatgagcgcaatgttaaaaaaaaa-tatacatacag---aatgtggtgagcatgaagacagccaaattagcaag 7745  T
Q  419 cttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgttatgaacttagctta 486  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  7746 cttaacataagtcattgtttgatcaaaataaagaataagttaaaattatttgttatgaacttagctta 7813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 244 - 319
Target Start/End: Original strand, 7549 - 7624
Alignment:
Q  244 acatatctatgcatataatgtatatatttaggaatgtttggtattaaattgagcatgtagtatactaatttttcat 319  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7549 acatatctatgcatataacgtatatatttaggaatgtttggtattaaattgagcatgtagtatactaatttttcat 7624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 7294 - 7524
Alignment:
Q  17 attcttaagtagcaatatccaaagccatcttcaagtactccttttcattagagttagaggtcatcgcccgtatagtcaatgcacctcattc---ctaaat 113  Q
    |||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||| |||| |||||||||||||||||  |  |||   ||||||    
T  7294 attcttaagtggcaatttccaaagccatcttcaagtagtctttttcattagagttagaggccatcacccgtatagtcaatgcaggtacttccaactaaat 7393  T
Q  114 ccgtaaggacacaacgacacgttatggagttgccgcatggcttcgactcaaatattgaacaacccataccgtatcttgcacattgcaatgcttcaacggt 213  Q
     |  | |||||||||||||||||| |  || ||||||||| |||| |        |||||||| |||||||  |||||||||||||  |||||||||| |    
T  7394 gcaaatggacacaacgacacgttacgatgtcgccgcatggattcggcaatgcccgtgaacaacgcataccgactcttgcacattgccctgcttcaacgtt 7493  T
Q  214 cttcatctggatgatcactgcaaatggtaaa 244  Q
    ||| |||||||  || |||||||||||||||    
T  7494 cttaatctggacaattactgcaaatggtaaa 7524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 87; Significance: 2e-41; HSPs: 8)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 25780 - 26000
Alignment:
Q  17 attcttaagtagcaatatccaaagccatcttcaagtactccttttcattagagttagaggtcatcgcccgtatagtcaatgcacctcattcctaa-atcc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    |||    |||||||  ||||||| || ||      
T  25780 attcttaagtagcaatatccaaagccatcttcaagtactccttttcattagagttagaggccatctg--gtactc-caatgcaggtcattccaaatattt 25876  T
Q  116 gtaag--gacacaacgacacgttatggagttgccgcatggcttcgactcaaatattgaacaacccataccgtatcttgcacattgcaatgcttcaacggt 213  Q
    | ||   ||||||  ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||| |   ||||||||||| |    
T  25877 gcaaactgacacattgacacgttatggagttgccgcatggattcaactcaaatattgaacaacgcataccgtatcttgcacaat---atgcttcaacgtt 25973  T
Q  214 cttcatctggatgatcactgcaaatgg 240  Q
    |||| |||||||||| |||||||||||    
T  25974 cttcgtctggatgattactgcaaatgg 26000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 315 - 494
Target Start/End: Original strand, 26124 - 26302
Alignment:
Q  315 ttcataacatataaatatatcggtgagaaagatgggcgcaatgttnnnnnnnnnntatacatacagcagaatgtcgtgagcatgaaaacagccaaagtag 414  Q
    |||||||||||||||||||||||||||||||||| ||||||||||          |||||||||||   ||||| ||||||||||| |||||| |||||     
T  26124 ttcataacatataaatatatcggtgagaaagatgagcgcaatgttaagaaaaa--tatacatacag---aatgtggtgagcatgaagacagccgaagtaa 26218  T
Q  415 cgatcttaacataagtcattgt----ttgatcaaaagaaagaataagctaaaattatttgttatgaacttagcttaatgttgca 494  Q
    | | ||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26219 caagcttaacataagtcattgtttgtttgatcaaaagaaagaataagctaaaattatttgttatgaacttagcttagtgttgca 26302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 390 - 494
Target Start/End: Original strand, 17487 - 17591
Alignment:
Q  390 gtgagcatgaaaacagccaaagtagcgatcttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgttatgaacttagcttaatg 489  Q
    ||||||||||| |||||||||||| | |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17487 gtgagcatgaagacagccaaagtaacaagtttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgttatgaacttagcttagtg 17586  T
Q  490 ttgca 494  Q
    |||||    
T  17587 ttgca 17591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 41177 - 41243
Alignment:
Q  248 atctatgcatataatgtatatatttaggaatgtttggtattaaattgagcatgtagtatactaattt 314  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  41177 atctatgcatataacgtatatatttaggaaagtttggtattaaattgagcatgtagtatattaattt 41243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 248 - 319
Target Start/End: Original strand, 26031 - 26102
Alignment:
Q  248 atctatgcatataatgtatatatttaggaatgtttggtattaaattgagcatgtagtatactaatttttcat 319  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||| |||||||| || || ||||||||||    
T  26031 atctatgcatataacgtacatatttaggaatgtttggtattaaattaagcatgtactaaaccaatttttcat 26102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 40835 - 40894
Alignment:
Q  17 attcttaagtagcaatatccaaagccatcttcaagtactccttttcattagagttagagg 76  Q
    |||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||    
T  40835 attcttaagtggcaatttccaaagccatcttcaagtagtctttttcattagagttagagg 40894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 95
Target Start/End: Original strand, 40943 - 40998
Alignment:
Q  40 gccatcttcaagtactccttttcattagagttagaggtcatcgcccgtatagtcaa 95  Q
    |||||||||||||||||| |||||||||| ||||||| |||| ||| |||||||||    
T  40943 gccatcttcaagtactccatttcattagaattagaggccatcacccctatagtcaa 40998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 17339 - 17379
Alignment:
Q  279 gtttggtattaaattgagcatgtagtatactaatttttcat 319  Q
    |||||| |||||||||||||||| ||||| |||||||||||    
T  17339 gtttggcattaaattgagcatgttgtataataatttttcat 17379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 319 - 494
Target Start/End: Complemental strand, 17565 - 17394
Alignment:
Q  319 taacatataaatatatcggtgagaaagatgggcgcaatgttnnnnnnnnnntatacatacagcagaatgtcgtgagcatgaaaacagccaaagtagcgat 418  Q
    ||||||||||||| |||| ||||||||||| ||||||||||          |||||||||||   ||| | ||||||||||| ||||||||||||| ||     
T  17565 taacatataaatacatcgatgagaaagatgagcgcaatgttaaaaaaaaa-tatacatacag---aatatggtgagcatgaagacagccaaagtagagag 17470  T
Q  419 cttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgttatgaacttagcttaatgttgca 494  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  17469 cttaacataagacattgtttgatcaaaagaaagaataagctaaaattatttgatatgaacttagcttagtgttgca 17394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 17661 - 17590
Alignment:
Q  248 atctatgcatataatgtatatatttaggaatgtttggtattaaattgagcatgtagtatactaatttttcat 319  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17661 atctatgcatataacgtatatatttaggaaagtttggtattaaattgagcatgtagtatactaatttttcat 17590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 381 - 486
Target Start/End: Complemental strand, 2106 - 1999
Alignment:
Q  381 cagaatgtcgtgagcatgaaaacagccaaagtagcgatcttaacata--agtcattgtttgatcaaaagaaagaataagctaaaattatttgttatgaac 478  Q
    |||||||| ||||||||||| |||||||||||| ||| |||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2106 cagaatgtggtgagcatgaagacagccaaagtaacgagcttaacatataagtcattgtttgatcaaaataaagaataagctaaaattatttgttatgaac 2007  T
Q  479 ttagctta 486  Q
    ||||||||    
T  2006 ttagctta 1999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 2501 - 2291
Alignment:
Q  17 attcttaagtagcaatatccaaagccatcttcaagtactccttttcattagagttagaggtcatcgcccgtatagtcaatgcacctcattcctaaatccg 116  Q
    |||||||||| ||||| |||||||||||||||||||| |  ||||||||||||||||||| |||| |||||||||||||||||  ||||||| ||||       
T  2501 attcttaagtggcaatttccaaagccatcttcaagtagtttttttcattagagttagaggccatcacccgtatagtcaatgcagatcattcc-aaatata 2403  T
Q  117 taaggacacaacgacacgttatggagttgccgcatggcttcgactcaaatattgaacaacccataccgtatcttgcacattgcaatgcttcaacggtctt 216  Q
    | ||             |||||||||||||||||||| ||||||||||||||||||||| || |||| ||||||||||| |||  |||||||||| ||||    
T  2402 ttaga------------gttatggagttgccgcatggattcgactcaaatattgaacaatccctaccatatcttgcacaatgccttgcttcaacgttctt 2315  T
Q  217 catctggatgatcactgcaaatgg 240  Q
    | |||||||||| ||| |||||||    
T  2314 cgtctggatgattactacaaatgg 2291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 2260 - 2189
Alignment:
Q  248 atctatgcatataatgtatatatttaggaatgtttggtattaaattgagcatgtagtatactaatttttcat 319  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2260 atctatgcatataacgtatatatttaggaatgtttggtattaaattgagcatgtagtatactaatttttcat 2189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 476
Target Start/End: Original strand, 10621936 - 10622008
Alignment:
Q  404 agccaaagtagcgatcttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgttatga 476  Q
    |||||||| ||||  |||||| |||||||||| |||||| ||||||||||   |||| |||||||||||||||    
T  10621936 agccaaaggagcgtgcttaacgtaagtcattgcttgatcgaaagaaagaactggctacaattatttgttatga 10622008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 477
Target Start/End: Original strand, 15126352 - 15126410
Alignment:
Q  419 cttaacataagtcattgtttgatcaaaagaaagaataagctaaaattatttgttatgaa 477  Q
    ||||||||||| |||||||||||| ||||||| || |||||  |||| |||||||||||    
T  15126352 cttaacataagccattgtttgatccaaagaaaaaacaagcttcaattgtttgttatgaa 15126410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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