View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16658_high_9 (Length: 496)

Name: NF16658_high_9
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16658_high_9
NF16658_high_9
[»] chr1 (10 HSPs)
chr1 (17-481)||(1793551-1794016)
chr1 (396-481)||(2012804-2012889)
chr1 (400-481)||(2011307-2011388)
chr1 (397-481)||(2007321-2007408)
chr1 (390-481)||(2020560-2020651)
chr1 (255-331)||(2007511-2007587)
chr1 (161-229)||(2007641-2007708)
chr1 (255-331)||(2020712-2020788)
chr1 (253-334)||(2012992-2013074)
chr1 (88-164)||(2007731-2007807)
[»] chr2 (3 HSPs)
chr2 (24-68)||(20954211-20954255)
chr2 (24-68)||(20935971-20936014)
chr2 (24-68)||(39275112-39275156)


Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Complemental strand, 1794016 - 1793551
Alignment:
Q  17 caaaggcggaaagatagtatgcataagagagacatagagcatattaaaactcgacagactactcca--tgtcctgcctacacacaattgttacaaatcca 114  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||| |||||||||||||||||||||||||||    
T  1794016 caaaggaggaaagatagtatgcataagagagacatagagcatattaaaactcgacagactacttcacatgtcgtgcctacacacaattgttacaaatcca 1793917  T
Q  115 aaaatcaaaggggggaggttcgtacaaaaagggcagataaaaagtatattgattgataaaagatgaaaaagaaggtacatgagtctctcatttaaaggac 214  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1793916 aaaatcaaaggggggaggttcgtacaaaaaggacagataaaaagtatattgattgataaaagatgaaaaagaaggtacatgagtctctcatt-aaaggac 1793818  T
Q  215 tctactacactaaattgagcctgactcataagttctatttgtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttgaaag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1793817 tctactacactaaattgagcctgactcataagttctatttgtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttgaaag 1793718  T
Q  315 gcactagacaaatactttaaggcagacaaagtttgcaaattctagaactgaaaaacatgacacaaatgcataaacaaagttaagccaaactaaatgatta 414  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||  |    
T  1793717 gcactagacaaatactttaagccagacaaagtttgcaaattctagaactgaaaaacatgacacaaaagcataaacaaagtcaagccaaactaaatgagca 1793618  T
Q  415 ctcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaattt 481  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1793617 ctcactaatatatgtagttctttaagattaggcgagcttctaaacacgcatagagcagctgaaattt 1793551  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 396 - 481
Target Start/End: Complemental strand, 2012889 - 2012804
Alignment:
Q  396 aagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaattt 481  Q
    |||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  2012889 aagccaaactaaatgagtactcacaaatatatttaattctttaagattaggcgagcttctgaacacacatagagcagttgaaattt 2012804  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 400 - 481
Target Start/End: Complemental strand, 2011388 - 2011307
Alignment:
Q  400 caaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaattt 481  Q
    |||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||    
T  2011388 caaagtaaatgagtactcacaaatatttttagttctttaagattaggcgagcttctgaacacacttagagcagttgaaattt 2011307  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 397 - 481
Target Start/End: Complemental strand, 2007408 - 2007321
Alignment:
Q  397 agccaaactaaatgatta---ctcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaattt 481  Q
    ||||||||||||||| ||   ||||| |||||||||| ||||||||||||||||||||| || |||||||||||||||| ||||||||    
T  2007408 agccaaactaaatgagtagtactcacaaatatatttaattctttaagattaggcgagctcctgaacacacatagagcagttgaaattt 2007321  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 390 - 481
Target Start/End: Complemental strand, 2020651 - 2020560
Alignment:
Q  390 aaagttaagccaaactaaatgattactcaccaatatatttagttctttaagattaggcgagcttctaaacacacatagagcagctgaaattt 481  Q
    ||||| ||| |||| ||||||| ||||||| | ||| | ||||| ||||||||||||||||||||| |||||||||||||||| ||||||||    
T  2020651 aaagtcaagtcaaagtaaatgagtactcacaattatttctagttttttaagattaggcgagcttctgaacacacatagagcagttgaaattt 2020560  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 255 - 331
Target Start/End: Complemental strand, 2007587 - 2007511
Alignment:
Q  255 gtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttgaaaggcactagacaaatactt 331  Q
    ||||||||||||||||||||||||||   || |||||||||| |||||  |||||||||||||||| | ||||||||    
T  2007587 gtaactcaagtgtacaagttttagaaaataatttccaatactggattgggaacttgaaaggcactaaaaaaatactt 2007511  T

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Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 2007708 - 2007641
Alignment:
Q  161 tattgattgataaaagatgaaaaagaaggtacatgagtctctcatttaaaggactctactacactaaat 229  Q
    |||||||||||||| ||||||||||||| ||||||||||||| ||||| |||  |||||| ||||||||    
T  2007708 tattgattgataaa-gatgaaaaagaagatacatgagtctctgatttatagggttctactgcactaaat 2007641  T

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Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 255 - 331
Target Start/End: Complemental strand, 2020788 - 2020712
Alignment:
Q  255 gtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttgaaaggcactagacaaatactt 331  Q
    |||||||||||||||||||||||||| | |||||||||||||| | ||  ||||| ||| | |||| ||||||||||    
T  2020788 gtaactcaagtgtacaagttttagaaactaacttccaatactaaactgggaactttaaatgtactaaacaaatactt 2020712  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 2013074 - 2012992
Alignment:
Q  253 ttgtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttg-aaaggcactagacaaatactttaa 334  Q
    ||||| |||||||| |||| |||||||| | ||||||||||||||||||   |||| | |||||||||| |||||||||||||    
T  2013074 ttgtagctcaagtgcacaaattttagaaactaacttccaatactagattaggaactagaaaaggcactaaacaaatactttaa 2012992  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 2007807 - 2007731
Alignment:
Q  88 tgcctacacacaattgttacaaatccaaaaatcaaaggggggaggttcgtacaaaaagggcagataaaaagtatatt 164  Q
    ||||||||  ||||||||||||||| | ||||||||||||| ||||| ||| | | |||  | ||||||||||||||    
T  2007807 tgcctacatgcaattgttacaaatctataaatcaaagggggaaggtttgtatacataggaaaaataaaaagtatatt 2007731  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 20954255 - 20954211
Alignment:
Q  24 ggaaagatagtatgcataagagagacatagagcatattaaaactc 68  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  20954255 ggaaagatagtatgcataagagggacatagagcatattaaaactc 20954211  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 20936014 - 20935971
Alignment:
Q  24 ggaaagatagtatgcataagagagacatagagcatattaaaactc 68  Q
    ||||||||||||||||||||| || ||||||||||||||||||||    
T  20936014 ggaaagatagtatgcataaga-aggcatagagcatattaaaactc 20935971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 39275156 - 39275112
Alignment:
Q  24 ggaaagatagtatgcataagagagacatagagcatattaaaactc 68  Q
    |||||||| |||||||||||||||||||| | | |||||||||||    
T  39275156 ggaaagattgtatgcataagagagacatataacctattaaaactc 39275112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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