View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16658_low_1 (Length: 1042)
Name: NF16658_low_1
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 875; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 875; E-Value: 0
Query Start/End: Original strand, 18 - 1023
Target Start/End: Complemental strand, 37890992 - 37889993
Alignment:
| Q |
18 |
gttttaataataacactaccacagcacaacaggttcaagtcaagttnnnnnnnnttctatctgaaaggtaaccttgaaaattcagcagagaggcattatt |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37890992 |
gttttaataataacactaccacagcacaacaggttcaagtcaagttaaaaaaaattctatctgaaaggtaaccttgaaaattcagcagagaggcattatt |
37890893 |
T |
|
| Q |
118 |
acaacaattttgcagtacaactggacctgaatcataaaatatttttgacctgaaagagcaacacagataagacatttcattgtcattgaaaatgacctaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37890892 |
acaacaattttgcagtacaactggacctgaatcataaaatatttttgacctgaaagagcaacacagataagacatttcattgtcattgaaaatgacctaa |
37890793 |
T |
|
| Q |
218 |
aaccaacatttcaacaaggcaaaaatctccaaaggcatgcatgacagaatcgataatagtcttaacctttgtcagagtggtaccctatgtggttttgcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37890792 |
aaccaacatttcaacaaggcaaaaatctccaaaggcatgcatgacagaatcgataatagtcttaacctttgtgagagtggtaccctatgtggttttgcaa |
37890693 |
T |
|
| Q |
318 |
ccctcatcagagacgaagagaggctattgtaagagaataatctccatcccattggaagaacaagattatctgccactaaccgttttcccttagctctcaa |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37890692 |
ccctcatcagagacgaagagaggctattgtaagagaataatctccatcccattggaagaacaagattatctgccactaaccgttttcccttagctctcaa |
37890593 |
T |
|
| Q |
418 |
ccttttgcaacccctgaagagtaaccaatacaaacaatttttaagnnnnnnnnntcctaggagatccctggtgcattgtttcaatatcaaattaaaatag |
517 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37890592 |
ccttttacaacccctgaagagtaaccaatacaaacaatttttaagaaaaaaaaatcctaggagatccctggtgcaatgtttcaatatcaaattaaaatag |
37890493 |
T |
|
| Q |
518 |
ttagtgccatctatctgaggtatgtttggatcaaaggagaaacatgaaannnnnnnnnnnngacagcagtaatttttatttaaacattccattacaacat |
617 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37890492 |
ttagtgccatctatctgaggtatgtttggatcaaaggagaaacatgaaattttttatttttgacagcagtaatttttatttaaacattccattacaacat |
37890393 |
T |
|
| Q |
618 |
tgagtcggtaaccttttgtcaacttagtataaccaatcacttcacttttgtcattttatttataccttgaggttcatatgcgatgtataacttcgtataa |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37890392 |
tgagtcggtaaccttttgtcaacttagtataaccaatcacttcacttttgtcattttatttataccttgaggttcatatgcgatgtataacttcgtataa |
37890293 |
T |
|
| Q |
718 |
ctaataatatttttgctatgtcaaatgtttttactaaaagtatcctatattttaacgatcatcatctatatatcttactattcataataagatttgattc |
817 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37890292 |
ctaataatatttttgctatgtcaaatgtttttactaaaagtatcctata-tttaacgatcatcatctatatatcttactattcataataagatttgattc |
37890194 |
T |
|
| Q |
818 |
actaatagatcttctgactgattcatgatttgtaatctcaaatttacaactacgccggagaagagtttatttgacctttcgatgatcatgataatctcat |
917 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37890193 |
actaatagatcttctgactgattcatgatttgtaatctcaaatttacaactacgccggagaagagtttattggacctttcgatgatcatgataatctcat |
37890094 |
T |
|
| Q |
918 |
caattgatatgatatgaggtaaatttagagaatattgatgcttttgtatcttaggatttaggatagataattccattaacttctcaactaatcaagaaga |
1017 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37890093 |
caat-----tgatatgaggtaaatttagagaatattgatgcttttgtatcttaggatttaggatagataattccattaacttctcaactaatcaagaaga |
37889999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 81 - 566
Target Start/End: Complemental strand, 37186057 - 37185568
Alignment:
| Q |
81 |
aaaggtaaccttgaaaattcagcagagaggcattattacaacaattttgcagtacaactggacctgaatcataaaatatttttgacctgaaagagcaaca |
180 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
37186057 |
aaaggtaaccttgaaaattcagcagagaagcactattacaacaattttgcagttcaactcgacctgaatcataaaatatttttgacctgaaagagaaaca |
37185958 |
T |
|
| Q |
181 |
cagataagacatttcattgtcattgaaaatgacctaaaa--------ccaacatttcaacaaggcaaaaatctccaaa--ggcatgcatgacagaatcga |
270 |
Q |
| |
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| || || || ||||||||||| |||||||| |||||| |||||||||||||||| ||||||| |||||| ||||| ||||||||||| || |
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| T |
37185957 |
aaaatgaggcagttcattgtcatggaaaatgatctaaaagtctaaaaccaacatttcaacaagacaaaaatgtccaaacaggcatccatgacagaattga |
37185858 |
T |
|
| Q |
271 |
taatagtcttaacctttgtcagagtggtaccctatgtggttttgcaaccctcatcagagacgaagagaggctattgtaagagaataatctccatcccatt |
370 |
Q |
| |
|
||||| ||||||||||||| ||||||||| || ||||||||||| ||||||||||||||||||| | |||||||||||||||||| |||||||||||| | |
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|
| T |
37185857 |
taataatcttaacctttgtgagagtggtagccaatgtggttttggaaccctcatcagagacgaaaaaaggctattgtaagagaatgatctccatccca-t |
37185759 |
T |
|
| Q |
371 |
ggaagaacaagattatctgccactaaccgttttcccttagctctcaaccttttgcaacccctgaagagtaaccaatacaaacaatttttaagnnnnnnnn |
470 |
Q |
| |
|
|||||||||||| ||||| | |||||| ||| |||| | |||| ||| || ||||||||||||||| |||||||||||| || || |
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|
| T |
37185758 |
agaagaacaagatgatctgacgctaaccaatttttcttaaccgtcaatcttaagctacccctgaagagtaatcaatacaaacaaattaaaa-----ataa |
37185664 |
T |
|
| Q |
471 |
ntcctaggagatccctggtgcattgtttcaatatcaaattaaaatagttagtgccatctatctgaggtatgtttggatcaaaggagaaacatgaaa |
566 |
Q |
| |
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||| |||| |||| |||| || ||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || |||||| |
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|
| T |
37185663 |
atcccaggaaatccatggtacaatgtttcattatcaaattaaaatagtaagtgccatcaatctgaggtatgtttggatcaaaggaggaatatgaaa |
37185568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 899 - 1004
Target Start/End: Complemental strand, 37185268 - 37185168
Alignment:
| Q |
899 |
atgatcatgataatctcatcaattgatatgatatgaggtaaatttagagaatattgatgcttttgtatcttaggatttaggatagataattccattaact |
998 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| | |||||||||| |||||||||||||| ||| ||||| ||| |||||| || ||||| |
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| T |
37185268 |
atgatcatgataatctcatcacttgatatga-----ggtagaattagagaatactgatgcttttgtatgttacgatttgggaatgataatccctgtaact |
37185174 |
T |
|
| Q |
999 |
tctcaa |
1004 |
Q |
| |
|
|||||| |
|
|
| T |
37185173 |
tctcaa |
37185168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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