View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16658_low_12 (Length: 477)
Name: NF16658_low_12
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 16 - 460
Target Start/End: Complemental strand, 54103114 - 54102670
Alignment:
| Q |
16 |
atgaatcagtagcgcagctcgttgtctgtttgcttttcattccgtaaaacttcctctcaatagtcttggtcaaaaataaatacaggttttgatggagtgg |
115 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54103114 |
atgaatcagtggcgcaactcgttgtttgtttgcttttcattccgtaaaacttcctctcaatagtcttggtcaaaaataaatacaggttttgatggagtgg |
54103015 |
T |
|
| Q |
116 |
agatacatggagctaatggatacttgcttgatcaattcctaaaggacaaagtgaacgatagagatgacgggtatggagggagcttagaaaatcgttgtcg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
54103014 |
agatacatggagctaatggatacttgcttgatcaattcctaaaggacaaagtgaacgatagagatgacgagtatggagggagcttagaaaatcgttgtcg |
54102915 |
T |
|
| Q |
216 |
cttccctctagaggttgtgaaagcagttgttgatgagattggagctgacaaagttggtgttagactttcaccttatgctgattattgtggttgtggagac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54102914 |
cttccctctagaggttgtgaaagcagttgttgatgagattggagctgacaaagttggtgttagactttcaccttatgctgattattgtggttgtggagac |
54102815 |
T |
|
| Q |
316 |
tctaaccctcatgctttaggcatctacatggctaagtcattaagtcaattaggcattctctattgtcatgtcattgaacctgggatgtgcaccatgtttg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54102814 |
tctaaccctcatgctttaggcatctacatggctaagtcattaagtcaattaggcattctctattgtcatgtcattgaacctgggatgtgcaccatgtttg |
54102715 |
T |
|
| Q |
416 |
aaaaatatgacaccaatgagtccttaatgcccatgagaaagatct |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54102714 |
aaaaatatgacaccaatgagtccttaatgcccatgagaaagatct |
54102670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 44171443 - 44171371
Alignment:
| Q |
98 |
caggttttgatggagtggagatacatggagctaatggatacttgcttgatcaattcctaaaggacaaagtgaa |
170 |
Q |
| |
|
||||||||||||| ||||| || ||||||||| |||| ||| | ||||| |||||| | ||||| |||||||| |
|
|
| T |
44171443 |
caggttttgatggtgtggaaattcatggagctcatggctacctacttgaacaattcatgaaggataaagtgaa |
44171371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 44191739 - 44191667
Alignment:
| Q |
98 |
caggttttgatggagtggagatacatggagctaatggatacttgcttgatcaattcctaaaggacaaagtgaa |
170 |
Q |
| |
|
||||||||||||| ||||| || ||||||||| |||| ||| | ||||| |||||| | ||||| |||||||| |
|
|
| T |
44191739 |
caggttttgatggtgtggaaattcatggagctcatggctacctacttgaacaattcatgaaggataaagtgaa |
44191667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University