View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16658_low_13 (Length: 457)
Name: NF16658_low_13
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 11 - 441
Target Start/End: Complemental strand, 38055389 - 38054959
Alignment:
| Q |
11 |
caaaggaatcaaagtcaccagcaagtctacatttctttcagaagccatctcttaaagctgtccgtagaagtttcagggcagaaggtagcagcctccttaa |
110 |
Q |
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| T |
38055389 |
caaaggaatcaaagtcaccagcaagtctacatttctttcagaagccatctcttaaagctgtccgtagaagtttcagggcagaaggtagcagcctccttaa |
38055290 |
T |
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| Q |
111 |
ggcttgcaattgccctgtggaatctccatctagagagcgacgtagggttagaaaatttagtgatcctatgaataagttagattctgagattcacggtgaa |
210 |
Q |
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| T |
38055289 |
ggcttgcaattgccctgtggaatctccatctagagagcgacgtagggttagaaaatttagtgatcctatgaataagttagattctgagattcacggtgaa |
38055190 |
T |
|
| Q |
211 |
agtagcatggaagaattgctttcaattgcagaaataccagcttctcctggtcaatctaaatactctctcgtatcaagtaaacaaatggttggaatttttc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38055189 |
agtagcatggaagaattgctttcaattgcagaaataccagcttctcctggtcaatctaaatactctctcgtatcaagtaaacaaatggttggaatttttc |
38055090 |
T |
|
| Q |
311 |
tcaccatatggactaagaaagagttagtacctcatattggccatcttagagtagactcggttgggagaggaatcatgggttgcttaggtaacaaggtaag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
38055089 |
tcaccatatggactaagaaagagttagtacctcatattggccatcttagagtagactctgttgggagaggaatcatgggttgcttaggtaacaaggtaag |
38054990 |
T |
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| Q |
411 |
aaaataattcttatgtattatatcattcaac |
441 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
38054989 |
aaaataattcttatgtattatatcattcaac |
38054959 |
T |
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