View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16658_low_14 (Length: 454)

Name: NF16658_low_14
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16658_low_14
NF16658_low_14
[»] chr1 (22 HSPs)
chr1 (1-335)||(26554449-26554793)
chr1 (334-442)||(48119626-48119734)
chr1 (330-442)||(35003288-35003400)
chr1 (331-442)||(44112672-44112783)
chr1 (334-442)||(38335916-38336024)
chr1 (336-442)||(38113189-38113295)
chr1 (336-442)||(46168383-46168489)
chr1 (336-442)||(41065153-41065259)
chr1 (336-442)||(45427739-45427845)
chr1 (336-442)||(45639726-45639832)
chr1 (336-442)||(45705825-45705931)
chr1 (336-442)||(26585462-26585568)
chr1 (332-442)||(35000107-35000217)
chr1 (336-393)||(14427347-14427404)
chr1 (335-435)||(43571087-43571187)
chr1 (336-435)||(37814778-37814877)
chr1 (336-435)||(5489776-5489875)
chr1 (338-422)||(2497576-2497660)
chr1 (336-435)||(23989524-23989624)
chr1 (336-435)||(48498963-48499062)
chr1 (338-435)||(7447828-7447924)
chr1 (336-435)||(750306-750405)
[»] chr4 (35 HSPs)
chr4 (328-442)||(17619146-17619260)
chr4 (335-442)||(55272370-55272477)
chr4 (336-442)||(32728357-32728463)
chr4 (336-442)||(711960-712066)
chr4 (336-442)||(46827700-46827806)
chr4 (338-442)||(38851515-38851619)
chr4 (338-441)||(3756242-3756344)
chr4 (336-442)||(48435573-48435679)
chr4 (338-442)||(35037007-35037111)
chr4 (331-442)||(960864-960975)
chr4 (336-416)||(49229684-49229764)
chr4 (336-435)||(28988473-28988572)
chr4 (369-442)||(19879987-19880060)
chr4 (336-435)||(41847971-41848070)
chr4 (336-435)||(23035980-23036079)
chr4 (336-435)||(33703141-33703240)
chr4 (336-422)||(1771280-1771366)
chr4 (336-422)||(27864564-27864650)
chr4 (336-422)||(28982836-28982922)
chr4 (336-422)||(55966360-55966446)
chr4 (338-435)||(27893843-27893940)
chr4 (338-435)||(41327544-41327641)
chr4 (333-435)||(27316714-27316816)
chr4 (337-435)||(41878407-41878505)
chr4 (336-421)||(25051693-25051778)
chr4 (378-442)||(36004110-36004174)
chr4 (336-435)||(27550309-27550408)
chr4 (333-435)||(35017730-35017831)
chr4 (336-430)||(48463456-48463550)
chr4 (334-435)||(45490314-45490415)
chr4 (332-372)||(36004168-36004208)
chr4 (338-422)||(43514700-43514784)
chr4 (335-421)||(12496955-12497041)
chr4 (338-435)||(43949802-43949900)
chr4 (222-251)||(1933743-1933772)
[»] chr8 (28 HSPs)
chr8 (336-442)||(34304788-34304894)
chr8 (336-442)||(35181516-35181622)
chr8 (336-442)||(16603620-16603726)
chr8 (338-442)||(33629987-33630091)
chr8 (337-442)||(16358827-16358933)
chr8 (336-442)||(18066712-18066818)
chr8 (336-442)||(19386559-19386670)
chr8 (335-435)||(1375541-1375641)
chr8 (378-442)||(10678146-10678210)
chr8 (332-435)||(11582762-11582865)
chr8 (334-435)||(29705360-29705461)
chr8 (336-435)||(36743484-36743583)
chr8 (338-435)||(29800951-29801048)
chr8 (338-435)||(42295197-42295294)
chr8 (338-435)||(26125637-26125734)
chr8 (338-422)||(20148762-20148846)
chr8 (338-422)||(30912576-30912660)
chr8 (338-422)||(42699259-42699343)
chr8 (336-435)||(5754903-5755002)
chr8 (336-435)||(30660743-30660842)
chr8 (344-435)||(31384672-31384763)
chr8 (336-435)||(42197436-42197535)
chr8 (337-422)||(45397317-45397402)
chr8 (336-435)||(40528635-40528735)
chr8 (336-435)||(2165964-2166063)
chr8 (336-435)||(2546996-2547095)
chr8 (335-375)||(9241563-9241603)
chr8 (336-372)||(10678204-10678240)
[»] chr2 (28 HSPs)
chr2 (336-442)||(966828-966934)
chr2 (336-442)||(43114557-43114663)
chr2 (332-442)||(12415454-12415564)
chr2 (332-442)||(12427514-12427624)
chr2 (336-442)||(18491705-18491811)
chr2 (338-442)||(11825648-11825752)
chr2 (338-442)||(41281968-41282072)
chr2 (336-442)||(16803968-16804074)
chr2 (336-442)||(16843250-16843356)
chr2 (338-442)||(4299414-4299518)
chr2 (336-442)||(34895735-34895841)
chr2 (338-421)||(6518484-6518566)
chr2 (352-442)||(4451944-4452034)
chr2 (356-442)||(12531657-12531742)
chr2 (337-435)||(34817777-34817875)
chr2 (336-442)||(14285676-14285782)
chr2 (334-435)||(1750412-1750513)
chr2 (336-435)||(4764727-4764826)
chr2 (336-435)||(30838632-30838731)
chr2 (336-435)||(43335764-43335863)
chr2 (334-435)||(13780736-13780837)
chr2 (334-435)||(16096745-16096846)
chr2 (336-435)||(12302254-12302353)
chr2 (337-435)||(19047158-19047256)
chr2 (336-432)||(42026767-42026865)
chr2 (338-435)||(43490402-43490499)
chr2 (338-421)||(8896598-8896681)
chr2 (333-422)||(7070413-7070502)
[»] chr7 (27 HSPs)
chr7 (335-442)||(31513286-31513393)
chr7 (336-442)||(40236919-40237025)
chr7 (337-442)||(31408627-31408732)
chr7 (336-442)||(27535225-27535331)
chr7 (336-442)||(33384870-33384977)
chr7 (338-435)||(10573751-10573848)
chr7 (333-435)||(24001013-24001115)
chr7 (338-435)||(4638200-4638297)
chr7 (338-435)||(43343625-43343722)
chr7 (338-435)||(44416935-44417032)
chr7 (335-435)||(42538432-42538532)
chr7 (336-435)||(24280597-24280696)
chr7 (336-422)||(42972852-42972938)
chr7 (336-421)||(5194246-5194331)
chr7 (336-435)||(35069721-35069820)
chr7 (336-422)||(9216302-9216387)
chr7 (335-393)||(39998407-39998465)
chr7 (330-435)||(5810925-5811030)
chr7 (336-421)||(43317443-43317528)
chr7 (338-422)||(44326180-44326264)
chr7 (336-435)||(5015395-5015494)
chr7 (339-422)||(26898416-26898499)
chr7 (366-435)||(32029818-32029887)
chr7 (336-393)||(41861674-41861731)
chr7 (352-435)||(38160580-38160663)
chr7 (334-421)||(45326018-45326105)
chr7 (338-435)||(16180358-16180454)
[»] chr5 (12 HSPs)
chr5 (336-442)||(17208074-17208180)
chr5 (336-442)||(30622713-30622818)
chr5 (335-442)||(32473388-32473495)
chr5 (336-435)||(7617133-7617232)
chr5 (333-435)||(2614650-2614752)
chr5 (331-421)||(38470574-38470664)
chr5 (334-435)||(22512303-22512404)
chr5 (336-435)||(33801469-33801568)
chr5 (336-435)||(41334664-41334763)
chr5 (338-435)||(5256997-5257094)
chr5 (331-435)||(18033977-18034081)
chr5 (336-408)||(33855071-33855143)
[»] chr3 (24 HSPs)
chr3 (336-442)||(9434124-9434230)
chr3 (336-442)||(10457886-10457992)
chr3 (330-442)||(51757587-51757699)
chr3 (336-442)||(25996268-25996374)
chr3 (336-442)||(4190259-4190365)
chr3 (336-441)||(52627972-52628077)
chr3 (334-442)||(34791827-34791935)
chr3 (333-422)||(42100685-42100774)
chr3 (334-422)||(45126942-45127030)
chr3 (331-435)||(40808860-40808964)
chr3 (336-435)||(46941053-46941152)
chr3 (330-436)||(53273684-53273790)
chr3 (337-435)||(54237097-54237195)
chr3 (335-435)||(36150129-36150229)
chr3 (336-435)||(24688403-24688502)
chr3 (336-435)||(25413681-25413780)
chr3 (101-209)||(41075636-41075746)
chr3 (336-435)||(54246149-54246248)
chr3 (337-435)||(40480750-40480848)
chr3 (337-435)||(42394420-42394518)
chr3 (338-435)||(27748565-27748662)
chr3 (378-435)||(51249350-51249407)
chr3 (338-435)||(53581859-53581956)
chr3 (336-435)||(47191027-47191125)
[»] chr6 (22 HSPs)
chr6 (336-442)||(33242403-33242509)
chr6 (338-442)||(27441544-27441648)
chr6 (333-436)||(33253910-33254013)
chr6 (336-435)||(3213400-3213499)
chr6 (334-435)||(13743222-13743323)
chr6 (334-435)||(13748722-13748823)
chr6 (336-442)||(31109216-31109322)
chr6 (336-421)||(7273350-7273435)
chr6 (338-422)||(24204001-24204085)
chr6 (336-435)||(9698334-9698433)
chr6 (336-435)||(26670010-26670109)
chr6 (101-209)||(31390301-31390411)
chr6 (336-422)||(7367549-7367635)
chr6 (335-435)||(30014342-30014442)
chr6 (336-435)||(21293678-21293777)
chr6 (336-435)||(26466799-26466898)
chr6 (336-435)||(7292747-7292846)
chr6 (336-435)||(21279929-21280028)
chr6 (338-421)||(30735984-30736067)
chr6 (222-251)||(12839252-12839281)
chr6 (222-251)||(25552812-25552841)
chr6 (222-251)||(25993978-25994007)
[»] scaffold0003 (1 HSPs)
scaffold0003 (338-442)||(45713-45817)
[»] scaffold0100 (1 HSPs)
scaffold0100 (335-442)||(35450-35557)
[»] scaffold0385 (1 HSPs)
scaffold0385 (336-435)||(11251-11350)
[»] scaffold0119 (1 HSPs)
scaffold0119 (336-435)||(685-784)
[»] scaffold0038 (1 HSPs)
scaffold0038 (337-435)||(112656-112754)
[»] scaffold0187 (2 HSPs)
scaffold0187 (336-435)||(14189-14288)
scaffold0187 (336-435)||(24517-24616)
[»] scaffold0157 (1 HSPs)
scaffold0157 (335-421)||(23436-23522)
[»] scaffold0006 (1 HSPs)
scaffold0006 (222-251)||(188215-188244)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 26554449 - 26554793
Alignment:
Q  1 acaaccgtgtgtagatctgcctgatagacaaccacatgtagatctacccgttgatcctagtcttttctgacttcgattatacacctgaggaggacctgca 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||   |||||||    
T  26554449 acaaccgtgtgtagatctgcatgatagacaaccacatgtagatctacctgttgatcctagtcttt-ctgacttcgattatacacctgagg---acctgca 26554544  T
Q  101 tgatcttaatgtgcagatttttgttgatcgacatgaccgatatgtcatttgcacttttgctaatgcaagtgtttataatgttggtcataatgtgttcatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  26554545 tgatcttaatgtgcagatttttgttgatcgacatgaccgatatgtcatttgcacttttgctaatgcgagtgtttataatattggtcataatgtgttcatc 26554644  T
Q  201 ctaatgtg-------------tcagtaagattttgggag--cacccaaggactgtttgtgtgtgctcaaacggttttttagtttactattatgggatgtg 285  Q
    ||||||||             || |||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26554645 ctaatgtgtcggtaatgttgatccgtaagattttgggagcacacccaaggactgtttgtgtgtgctcaagcggttttttagtttactattatgggatgtg 26554744  T
Q  286 aatgggttcaaggtgtccagtgtttttaggcacctttgtatctcttttat 335  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26554745 aatgggttcaaggtgtcc-gtgtttttaggcacctttgtatctcttttat 26554793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 334 - 442
Target Start/End: Original strand, 48119626 - 48119734
Alignment:
Q  334 atggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctc 433  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  48119626 atggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctc 48119725  T
Q  434 tttcatctc 442  Q
    |||||||||    
T  48119726 tttcatctc 48119734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 330 - 442
Target Start/End: Original strand, 35003288 - 35003400
Alignment:
Q  330 ttttatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactt 429  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||| ||||||    
T  35003288 ttttttggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatacattaaggatattttggtaaattcatctcacaaccatactt 35003387  T
Q  430 tctctttcatctc 442  Q
    |||||||||||||    
T  35003388 tctctttcatctc 35003400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 331 - 442
Target Start/End: Original strand, 44112672 - 44112783
Alignment:
Q  331 tttatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatacttt 430  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| |||||||    
T  44112672 tttaaggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatacttt 44112771  T
Q  431 ctctttcatctc 442  Q
    ||||||||||||    
T  44112772 ctctttcatctc 44112783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 334 - 442
Target Start/End: Original strand, 38335916 - 38336024
Alignment:
Q  334 atggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctc 433  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  38335916 atggaaaatgttacatgaacaccctttaatcatacaccttattgtacatcccatgcattaaggatattttggtaaattcatctcacaaccatactttctc 38336015  T
Q  434 tttcatctc 442  Q
    |||||||||    
T  38336016 tttcatctc 38336024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 38113295 - 38113189
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| |||||    
T  38113295 ggaaaatgttatatgaacaccctttaatcatacaccctattgtacaccccatgcattaatgacattttggtaaattcatctcacaaccatacttactctt 38113196  T
Q  436 tcatctc 442  Q
    |||||||    
T  38113195 tcatctc 38113189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 46168383 - 46168489
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||||||||| | |||||||||||||| ||||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  46168383 ggaaaatgttacatgaacaccctttaatcatatatcctattgtacacccaatgcattaaggatattttggtaaattcatctcacaaccatactttctctt 46168482  T
Q  436 tcatctc 442  Q
    |||||||    
T  46168483 tcatctc 46168489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 41065153 - 41065259
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| || | ||||||||| ||||||||||||| ||||||||||||    
T  41065153 ggaaaatgttacatgaacaccctttaatcatacaccctgttgtacaccccatgcattaggggcattttggtaatttcatctcacaaccatactttctctt 41065252  T
Q  436 tcatctc 442  Q
    || ||||    
T  41065253 tcctctc 41065259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 45427845 - 45427739
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||| | | ||||||||||||||||||||||||| |||||||||| |||| ||||||||| ||||||||||||| ||||||||||||    
T  45427845 ggaaaatgttacatgaataccttttaatcatacaccctattgtacactccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 45427746  T
Q  436 tcatctc 442  Q
    |||||||    
T  45427745 tcatctc 45427739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 45639832 - 45639726
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||||  ||||||||||||| ||||||||||||||||| |||||||||  ||||||||||||||||||||||  ||||||||||||    
T  45639832 ggaaaatgttacatgaacactctttaatcatacatcctattgtacaccccatacattaaggatattttggtaaattcatctcacaatcatactttctctt 45639733  T
Q  436 tcatctc 442  Q
    |||||||    
T  45639732 tcatctc 45639726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 45705825 - 45705931
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||| ||||||| ||||||||||||||  ||||||||||| |||||||||| |||| ||||| ||||||||||||||||| ||||||||||||    
T  45705825 ggaaaatgttatatgaacaccctttaatcatacattctattgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctt 45705924  T
Q  436 tcatctc 442  Q
    |||||||    
T  45705925 tcatctc 45705931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 26585462 - 26585568
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||| |||||||| ||||||||||||||  |||||||||||||||||||||||||  |||| ||||||||||||| |||  ||||||||||||    
T  26585462 ggaaaatgttagatgaacattctttaatcatacactatattgtacaccccatgcattaaggatattttagtaaattcatctcgcaatcatactttctctt 26585561  T
Q  436 tcatctc 442  Q
    |||||||    
T  26585562 tcatctc 26585568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 332 - 442
Target Start/End: Complemental strand, 35000217 - 35000107
Alignment:
Q  332 ttatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttc 431  Q
    ||||||||||||||||||||||| | ||||||||||||| |||||||| ||  |||| |||| |||| ||||| |||||| |||||||||| ||||||||    
T  35000217 ttatggaaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattagggacattttgataaatttatctcacaaccatactttc 35000118  T
Q  432 tctttcatctc 442  Q
    |||||||||||    
T  35000117 tctttcatctc 35000107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 393
Target Start/End: Original strand, 14427347 - 14427404
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcatta 393  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  14427347 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcatta 14427404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 335 - 435
Target Start/End: Complemental strand, 43571187 - 43571087
Alignment:
Q  335 tggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctct 434  Q
    |||||||||||||||||||| |||||| || ||||||  ||||||||||||||| |||| |||  ||||||||| ||||||||||||| | ||||| |||    
T  43571187 tggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatct 43571088  T
Q  435 t 435  Q
    |    
T  43571087 t 43571087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 37814778 - 37814877
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||| |||| |||||| ||||||| |  ||||||||||||||| ||||||||  ||||||||||||||| ||||||| | ||||| ||||    
T  37814778 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccacactttatctt 37814877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 5489776 - 5489875
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| || |||| || ||||||||||| ||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  5489776 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 5489875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 2497660 - 2497576
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    |||||||||||| |||| | |||| |||||||  | ||||||||||||||  ||||||||  ||||||||| |||||||||||||    
T  2497660 aaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctcacaac 2497576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 23989624 - 23989524
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaat-catacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctct 434  Q
    ||||||||||||||||||| ||||| || ||||||| | |||||| |||| ||| |||| |||  |||||||||||| |||||||||| | ||||| |||    
T  23989624 ggaaaatgttacatgaacacccttttattcatacactcaattgtataccctatgtattagggatattttggtaaatttatctcacaaccacactttatct 23989525  T
Q  435 t 435  Q
    |    
T  23989524 t 23989524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 48499062 - 48498963
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||||  ||||| |  ||||| | |||||||||| |||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  48499062 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 48498963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 435
Target Start/End: Original strand, 7447828 - 7447924
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||||||||| || |||| || |||||||| |||||| ||||  ||  ||||| ||| ||||||||||||| | ||||| ||||    
T  7447828 aaaatgttacatgaacatcctttattcctacatcccattgtaca-cccatgtattacagatattttgataagttcatctcacaaccacactttatctt 7447924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 750405 - 750306
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||| |||||| ||||   || ||||||| ||||||||||||||| || | |||  ||||| ||||||||||||| ||| | ||||| ||||    
T  750405 ggaaaatgttacgtgaacacccttatttcctacaccccattgtacaccccatgtatcagggatattttgataaattcatctcaaaaccacactttatctt 750306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 328 - 442
Target Start/End: Complemental strand, 17619260 - 17619146
Alignment:
Q  328 tcttttatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatac 427  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||    
T  17619260 tcttttatggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatac 17619161  T
Q  428 tttctctttcatctc 442  Q
    |||||||||||||||    
T  17619160 tttctctttcatctc 17619146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 335 - 442
Target Start/End: Complemental strand, 55272477 - 55272370
Alignment:
Q  335 tggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctct 434  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  55272477 tggaaaatgttacatgaacatcctttaatcatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatactttctct 55272378  T
Q  435 ttcatctc 442  Q
    ||||||||    
T  55272377 ttcatctc 55272370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 32728357 - 32728463
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||  ||||||||||||    
T  32728357 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacattttagtaaattcatctcacaatcatactttctctt 32728456  T
Q  436 tcatctc 442  Q
    |||||||    
T  32728457 tcatctc 32728463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 711960 - 712066
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||  ||||||||||||    
T  711960 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccctatgcattaaggatattttggtaaattcatctcacaaacatactttctctt 712059  T
Q  436 tcatctc 442  Q
    |||||||    
T  712060 tcatctc 712066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 46827806 - 46827700
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||| |||||||||  ||| ||||||||    
T  46827806 ggaaaatgttacatgaacaccctttaatcatacactctattgtacacccaatgcattaagaacgttttggtaaatttatctcacaaacatattttctctt 46827707  T
Q  436 tcatctc 442  Q
    |||||||    
T  46827706 tcatctc 46827700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 338 - 442
Target Start/End: Original strand, 38851515 - 38851619
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctttc 437  Q
    ||||||||||||||| |||||||||||||||| | || ||||||| |||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||    
T  38851515 aaaatgttacatgaatatcctttaatcatacatcataatgtacactccatgcattatggacattttgataaattcatctcacaaccatactttctctttc 38851614  T
Q  438 atctc 442  Q
    |||||    
T  38851615 atctc 38851619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 338 - 441
Target Start/End: Complemental strand, 3756344 - 3756242
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctttc 437  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||| ||||||| |||||||||  ||||||| ||||||    
T  3756344 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaaggatattttagtaaatttatctcacaatcatacttt-tctttc 3756246  T
Q  438 atct 441  Q
    ||||    
T  3756245 atct 3756242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 48435679 - 48435573
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||| ||||||||||||| | |||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||||||||  ||||||| ||||    
T  48435679 ggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctt 48435580  T
Q  436 tcatctc 442  Q
    |||||||    
T  48435579 tcatctc 48435573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 338 - 442
Target Start/End: Original strand, 35037007 - 35037111
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctttc 437  Q
    |||||||||||||| || ||||||| ||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||| ||| ||| ||||||    
T  35037007 aaaatgttacatgagcaccctttaaccatacactctattgtacaccccatgcattaaggatattttggtaaattcatctcacaaccatattttttctttc 35037106  T
Q  438 atctc 442  Q
     ||||    
T  35037107 ttctc 35037111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 331 - 442
Target Start/End: Complemental strand, 960975 - 960864
Alignment:
Q  331 tttatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatacttt 430  Q
    |||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| || ||||| |||| ||||||||||||||||| | ||   ||||||    
T  960975 tttaaggaaaatgttacatgaacaccctttaatcatacactctattgtacaccctatacattagggacattttggtaaattcatcttataatcgtacttt 960876  T
Q  431 ctctttcatctc 442  Q
    ||||||||||||    
T  960875 ctctttcatctc 960864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 336 - 416
Target Start/End: Complemental strand, 49229764 - 49229684
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatct 416  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||  || ||||||||||||||    
T  49229764 ggaaaatgttatatgaacatcctttaatcatacaccctattgtacacttcatgcattaaggatattctggtaaattcatct 49229684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 28988473 - 28988572
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| |||||||||  ||||||||||||||||| || |||| ||||| ||||||||||||| ||| | ||||||||||    
T  28988473 ggaaaatgttacatgaacaccctttattcatacacctcattgtacaccccatgcactagggacattttgataaattcatctcataaccacactttctctt 28988572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 442
Target Start/End: Original strand, 19879987 - 19880060
Alignment:
Q  369 accctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctttcatctc 442  Q
    |||||||||||||||||||  |||| |||| ||||||||||||||||||||||  |||||||||||||||||||    
T  19879987 accctattgtacaccccatatattatggacattttggtaaattcatctcacaatcatactttctctttcatctc 19880060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 41847971 - 41848070
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||| |||||||||||  ||| |||||  ||||||||||||||||||||  ||| |||||| ||||||||| |||||| | ||||||||||    
T  41847971 ggaaaatgttacaagaacatccttttttcacacacctcattgtacaccccatgcattagagacattttggcaaattcatcgcacaaccacactttctctt 41848070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 23035980 - 23036079
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||| ||||||| || ||||||||||||||||||| ||  |||| |||  |||| |||| ||||||||||||| | ||||| ||||    
T  23035980 ggaaaatgttacatgaacctcctttattcctacaccctattgtacaccctatatattagggatatttttgtaagttcatctcacaaccacactttatctt 23036079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 33703141 - 33703240
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| |  |||| | |||||||||||||||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  33703141 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 33703240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 422
Target Start/End: Complemental strand, 1771366 - 1771280
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    ||||||||||||||||||| |||||| || ||||||| ||||||||||||||| ||||  ||  ||||| ||| |||||||||||||    
T  1771366 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctcacaac 1771280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 422
Target Start/End: Original strand, 27864564 - 27864650
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    |||||||||||||| |||| | |||| ||||||| || ||||||||||||||| |||| |||  ||||||||| |||||||||||||    
T  27864564 ggaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaac 27864650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 422
Target Start/End: Complemental strand, 28982922 - 28982836
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    ||||||||||||||||||| |||||| |  |||||||||||||||| |||||  |||| |||  ||||||||| |||||||||||||    
T  28982922 ggaaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctcacaac 28982836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 422
Target Start/End: Complemental strand, 55966446 - 55966360
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    |||||||||||||| |||| |||||| ||||||| || |||||||| |||||| |||| |||  ||||||||| |||||||||||||    
T  55966446 ggaaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctcacaac 55966360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 27893940 - 27893843
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||| |||| | |||| ||||||| || ||||||||||||||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  27893940 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaaccacactttatctt 27893843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 41327641 - 41327544
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||  ||| |||||| ||| |||||| ||||||||||  ||||| || |||| ||||||||||||||||||||| | | ||||||||||    
T  41327641 aaaatgttacatagacaccctttattcacacaccccattgtacaccttatgcactacggacattttggtaaattcatctcacatccacactttctctt 41327544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 333 - 435
Target Start/End: Complemental strand, 27316816 - 27316714
Alignment:
Q  333 tatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttct 432  Q
    |||||||||||||| | ||||| |||||| || ||||||  ||| ||||||||||| ||||||||  ||||||||| ||||||||| ||| | ||||| |    
T  27316816 tatggaaaatgttaaacgaacaccctttattcctacacctcattatacaccccatgtattaaggatattttggtaagttcatctcataaccacactttat 27316717  T
Q  433 ctt 435  Q
    |||    
T  27316716 ctt 27316714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 435
Target Start/End: Original strand, 41878407 - 41878505
Alignment:
Q  337 gaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||  ||||| |||||||||  ||||||||||| || ||||| |||  ||||| ||| ||||||||||||| | || |||||||    
T  41878407 gaaaatgttacatgaacactctttattcatacacctcattgtacaccctatccattagggatattttgataagttcatctcacaaccaaaccttctctt 41878505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 421
Target Start/End: Original strand, 25051693 - 25051778
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaa 421  Q
    ||||||||| |||||||||  ||||| || ||||||| ||||||||||| ||| |||| |||  ||||||||| ||||||||||||    
T  25051693 ggaaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctcacaa 25051778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 36004174 - 36004110
Alignment:
Q  378 tacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctttcatctc 442  Q
    ||||||||||  |||| |||| ||||| |||||| |||||||||| |||||||||||||||||||    
T  36004174 tacaccccatatattagggacattttgataaatttatctcacaaccatactttctctttcatctc 36004110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 27550309 - 27550408
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| |  ||||| | |||||||||| |||| |||| |||  ||||||||| ||||||| ||||| | ||||| ||||    
T  27550309 ggaaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatcttacaaccacactttatctt 27550408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 435
Target Start/End: Original strand, 35017730 - 35017831
Alignment:
Q  333 tatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttct 432  Q
    |||||||||||||||||||||| |||||| || || | |  ||||||||||||||| | || |||  ||||||||| ||||||||||||| | ||||| |    
T  35017730 tatggaaaatgttacatgaacaccctttattcctatatctcattgtacaccccatgta-tagggatattttggtaagttcatctcacaaccacactttat 35017828  T
Q  433 ctt 435  Q
    |||    
T  35017829 ctt 35017831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 430
Target Start/End: Complemental strand, 48463550 - 48463456
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatacttt 430  Q
    |||||||||||||| |||| | |||| |||||||    |||||||| |||||| |||| |||  ||||||||| ||||||||||||| |||||||    
T  48463550 ggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatacttt 48463456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 334 - 435
Target Start/End: Complemental strand, 45490415 - 45490314
Alignment:
Q  334 atggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctc 433  Q
    |||||||||||||||||||||   |||| | ||||| || |||||||||| |||| |||| |||   ||| |||||||||||||||||| | ||||| ||    
T  45490415 atggaaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggatactttagtaaattcatctcacaaccacactttatc 45490316  T
Q  434 tt 435  Q
    ||    
T  45490315 tt 45490314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 36004208 - 36004168
Alignment:
Q  332 ttatggaaaatgttacatgaacatcctttaatcatacaccc 372  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  36004208 ttatggaaaatgttacatgaataccctttaatcatacaccc 36004168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 43514784 - 43514700
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    ||||||||||||||||| |||||| || ||||| | |||||||||  |||| |||| ||   ||||||||| |||||||||||||    
T  43514784 aaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctcacaac 43514700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 421
Target Start/End: Original strand, 12496955 - 12497041
Alignment:
Q  335 tggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaa 421  Q
    |||||||||||| ||||||| |||||| || ||||| | |||||||| |||||| ||||  ||  ||||||||| ||||||| ||||    
T  12496955 tggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaa 12497041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 43949900 - 43949802
Alignment:
Q  338 aaaatgttacatgaacatcctttaat-catacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||| |||||||||| ||||| || | | ||||  ||||||||||||||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  43949900 aaaatgatacatgaacacccttttattcctgcacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 43949802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 1933772 - 1933743
Alignment:
Q  222 gggagcacccaaggactgtttgtgtgtgct 251  Q
    ||||||||||||||||||||||||||||||    
T  1933772 gggagcacccaaggactgtttgtgtgtgct 1933743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 34304788 - 34304894
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||    
T  34304788 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 34304887  T
Q  436 tcatctc 442  Q
    |||||||    
T  34304888 tcatctc 34304894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 35181516 - 35181622
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||    
T  35181516 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 35181615  T
Q  436 tcatctc 442  Q
    |||||||    
T  35181616 tcatctc 35181622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 16603726 - 16603620
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||| ||| |||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||||||||| |||||| |||||    
T  16603726 ggaaaatgttacatgcacaccctttaatcatacaccttattatacaccccatgcattaaagacattttggtaaattcatctcacaaccatacttactctt 16603627  T
Q  436 tcatctc 442  Q
    |||||||    
T  16603626 tcatctc 16603620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 338 - 442
Target Start/End: Complemental strand, 33630091 - 33629987
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctttc 437  Q
    ||||||||||| ||||| ||||||||||||||||  ||||||||||| |||||||| |||| |||| |||| ||||||||||||||||||||||||||||    
T  33630091 aaaatgttacacgaacaccctttaatcatacacctcattgtacaccctatgcattagggacattttagtaatttcatctcacaactatactttctctttc 33629992  T
Q  438 atctc 442  Q
    |||||    
T  33629991 atctc 33629987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 337 - 442
Target Start/End: Complemental strand, 16358933 - 16358827
Alignment:
Q  337 gaaaatgttacat-gaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||||| |  ||||| ||||||||||||||||| ||||||||| ||    
T  16358933 gaaaatgttacattgaagaccctttaatcatacaccctattgtacatcccatgcattaagaatattttgataaattcatctcacaaccatactttctttt 16358834  T
Q  436 tcatctc 442  Q
    |||||||    
T  16358833 tcatctc 16358827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 18066818 - 18066712
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||| |||||| |||| |||  |||| |||| ||||||||||||| ||||||||||||    
T  18066818 ggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggatattttagtaatttcatctcacaaccatactttctctt 18066719  T
Q  436 tcatctc 442  Q
    |||||||    
T  18066718 tcatctc 18066712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 19386670 - 19386559
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccc-----catgcattaaggacgttttggtaaattcatctcacaactatacttt 430  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||   |     ||||||||||| | |||||| |||||||||||||||||||||||||    
T  19386670 ggaaaatgttacatgaacaccctttaatcatacaccctattatactttctctttcatgcattaagaatgttttgataaattcatctcacaactatacttt 19386571  T
Q  431 ctctttcatctc 442  Q
    ||||||||||||    
T  19386570 ctctttcatctc 19386559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 335 - 435
Target Start/End: Original strand, 1375541 - 1375641
Alignment:
Q  335 tggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctct 434  Q
    |||||||| ||||||||||| | |||| |||||||||| ||||||||||||||  |||| |||  |||||||||||| |||||||||||| ||||| |||    
T  1375541 tggaaaattttacatgaacaccttttattcatacacccaattgtacaccccatatattagggatattttggtaaatttatctcacaactacactttatct 1375640  T
Q  435 t 435  Q
    |    
T  1375641 t 1375641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 378 - 442
Target Start/End: Complemental strand, 10678210 - 10678146
Alignment:
Q  378 tacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctttcatctc 442  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  10678210 tacaccccatatattaaggacattttggtaaattcatctcacaaccatactttctctttcatctc 10678146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 332 - 435
Target Start/End: Original strand, 11582762 - 11582865
Alignment:
Q  332 ttatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttc 431  Q
    ||||||||||||||||||||||| |||||| || |||| || ||||||||||| ||| |||| |||  ||||||||| ||||||||||||| | |||||     
T  11582762 ttatggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacacttta 11582861  T
Q  432 tctt 435  Q
    ||||    
T  11582862 tctt 11582865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 334 - 435
Target Start/End: Original strand, 29705360 - 29705461
Alignment:
Q  334 atggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctc 433  Q
    ||||||||||||||||||||| |||||| |  ||||||| ||||||||||||||| |||| |||  ||||| ||| ||||||||||||| | ||||| ||    
T  29705360 atggaaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatc 29705459  T
Q  434 tt 435  Q
    ||    
T  29705460 tt 29705461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 36743583 - 36743484
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| || |||| || ||||||||||| ||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  36743583 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 36743484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 29801048 - 29800951
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||| |||| | |||| ||||||| || ||||||||||||||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  29801048 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 29800951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 435
Target Start/End: Original strand, 42295197 - 42295294
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||| |||||| || ||||||  ||||||||| ||||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  42295197 aaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 42295294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 435
Target Start/End: Original strand, 26125637 - 26125734
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||| |||| |||||| |||||||  | ||||||||||| ||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  26125637 aaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 26125734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 422
Target Start/End: Original strand, 20148762 - 20148846
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    |||||||||||| |||| |||||| ||||||| || |||||||||| |||  |||| |||  ||||||||| |||||||||||||    
T  20148762 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaac 20148846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 30912660 - 30912576
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    ||||||||||||||||| |||||| || ||||||| |||||||||  |||| |||| ||   ||||||||| |||||||||||||    
T  30912660 aaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctcacaac 30912576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 422
Target Start/End: Original strand, 42699259 - 42699343
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    ||||||||||||||||| |||||| || ||||||| ||||||||||  ||| |||| |||  |||| |||| |||||||||||||    
T  42699259 aaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctcacaac 42699343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 5754903 - 5755002
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| | |||| || |||| || |||||||| |||||  |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  5754903 ggaaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctcacaaccacactttatctt 5755002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 30660842 - 30660743
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| |  |||| || ||||||||||| ||| |||| |||  ||||||||| ||||||| ||||| | ||||| ||||    
T  30660842 ggaaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatcttacaaccacactttatctt 30660743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 435
Target Start/End: Original strand, 31384672 - 31384763
Alignment:
Q  344 ttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||| |||||| || ||||  ||||||||||||||||| |||| | |  ||||||||| ||||||||||||| | ||||| ||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctcacaaccacactttatctt 31384763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 42197535 - 42197436
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| | |||| || ||||||| |||| |||| | ||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  42197535 ggaaaatgttacatgaacaccatttattcctacaccccattgcacacactatgtattagggatattttggtaagttcatctcacaaccacactttatctt 42197436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 337 - 422
Target Start/End: Original strand, 45397317 - 45397402
Alignment:
Q  337 gaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    ||||||||||| |||||| |||||| || ||||||| ||| ||||||| ||| |||| |||  |||| |||| |||||||||||||    
T  45397317 gaaaatgttacgtgaacaccctttattcctacaccccattctacaccctatgtattagggatatttttgtaagttcatctcacaac 45397402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 40528735 - 40528635
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaat-catacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctct 434  Q
    |||||||  |||||||||| ||||| || || | |||| ||||||||||||||  |||| |||| ||||| |||||| |||||||||| | |||||||||    
T  40528735 ggaaaataatacatgaacacccttttattcacaaaccccattgtacaccccatatattagggacattttgataaatttatctcacaaccacactttctct 40528636  T
Q  435 t 435  Q
    |    
T  40528635 t 40528635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 2166063 - 2165964
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||| ||||||||||| | |||| || ||||||| |||||| |||||||| ||||  ||  ||||||||| ||||||||| ||| | ||||| ||||    
T  2166063 ggaaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctcataaccacactttatctt 2165964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 2546996 - 2547095
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||||  ||||| |  ||||| | |||||||||| |||| |||| |||  |||| |||| ||||||||||||| | ||||| ||||    
T  2546996 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctcacaaccacactttatctt 2547095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 375
Target Start/End: Original strand, 9241563 - 9241603
Alignment:
Q  335 tggaaaatgttacatgaacatcctttaatcatacaccctat 375  Q
    ||||||||||||||||||| ||||||| || ||||||||||    
T  9241563 tggaaaatgttacatgaacctcctttattcctacaccctat 9241603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 336 - 372
Target Start/End: Complemental strand, 10678240 - 10678204
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccc 372  Q
    ||||||||||||||||| | |||||||||||||||||    
T  10678240 ggaaaatgttacatgaataccctttaatcatacaccc 10678204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 966934 - 966828
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  966934 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattaagaacgttttggtaaattcatctcacaaacatactttctctt 966835  T
Q  436 tcatctc 442  Q
    |||||||    
T  966834 tcatctc 966828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 43114557 - 43114663
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||    
T  43114557 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 43114656  T
Q  436 tcatctc 442  Q
    |||||||    
T  43114657 tcatctc 43114663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 332 - 442
Target Start/End: Complemental strand, 12415564 - 12415454
Alignment:
Q  332 ttatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttc 431  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||||||| || |||||||||| ||||||||    
T  12415564 ttatggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttc 12415465  T
Q  432 tctttcatctc 442  Q
    |||||||||||    
T  12415464 tctttcatctc 12415454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 332 - 442
Target Start/End: Complemental strand, 12427624 - 12427514
Alignment:
Q  332 ttatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttc 431  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||| ||||||||| || |||||||||| ||||||||    
T  12427624 ttatggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccccatgcattagggacattttggtaattttatctcacaaccatactttc 12427525  T
Q  432 tctttcatctc 442  Q
    |||||||||||    
T  12427524 tctttcatctc 12427514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 18491705 - 18491811
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||| |||||    
T  18491705 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacacctcatgcattaagaacattttggtaaattcatctcacaaccatacttactctt 18491804  T
Q  436 tcatctc 442  Q
    |||||||    
T  18491805 tcatctc 18491811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 338 - 442
Target Start/End: Complemental strand, 11825752 - 11825648
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctttc 437  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||  ||||||||||||||    
T  11825752 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttggtaatttcatctcacaatcatactttctctttc 11825653  T
Q  438 atctc 442  Q
    |||||    
T  11825652 atctc 11825648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 338 - 442
Target Start/End: Complemental strand, 41282072 - 41281968
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctttc 437  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||||||||||| ||||||||||||||    
T  41282072 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccccatgcattagggacattttgataatttcatctcacaaccatactttctctttc 41281973  T
Q  438 atctc 442  Q
    |||||    
T  41281972 atctc 41281968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 16803968 - 16804074
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| ||||| ||| ||||||||||||| ||||||||||||    
T  16803968 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctt 16804067  T
Q  436 tcatctc 442  Q
    |||||||    
T  16804068 tcatctc 16804074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 16843250 - 16843356
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| ||||| ||| ||||||||||||| ||||||||||||    
T  16843250 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacatcccatgcattagggacattttgataatttcatctcacaaccatactttctctt 16843349  T
Q  436 tcatctc 442  Q
    |||||||    
T  16843350 tcatctc 16843356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 338 - 442
Target Start/End: Complemental strand, 4299518 - 4299414
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctttc 437  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||  |||||| ||||||     
T  4299518 aaaatgttatatgaacaccctttaatcatacaccctattgtacactccatgcattaatgacattttggtaaattcatctcacaatcatacttactcttta 4299419  T
Q  438 atctc 442  Q
    |||||    
T  4299418 atctc 4299414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 34895841 - 34895735
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||| ||||||||||||| | |||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||||||||  ||||||| ||||    
T  34895841 ggaaagtgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttatctt 34895742  T
Q  436 tcatctc 442  Q
    |||||||    
T  34895741 tcatctc 34895735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 6518566 - 6518484
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaa 421  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||    
T  6518566 aaaatgttacatgaaca-cctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaa 6518484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 352 - 442
Target Start/End: Complemental strand, 4452034 - 4451944
Alignment:
Q  352 acatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctttcatctc 442  Q
    ||||||| |||||||||| | |||||||||||  |||||||| |||  ||||||||||||||||||||||| |||||||||||||||||||    
T  4452034 acatcctataatcatacatcttattgtacaccatatgcattagggatattttggtaaattcatctcacaaccatactttctctttcatctc 4451944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 442
Target Start/End: Complemental strand, 12531742 - 12531657
Alignment:
Q  356 cctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctttcatctc 442  Q
    ||||||||||||||||| |||||||||| || |||||| || | ||||||||||||||||||||||| |||||||||||||||||||    
T  12531742 cctttaatcatacacccaattgtacacctcaagcattatgggc-ttttggtaaattcatctcacaaccatactttctctttcatctc 12531657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 337 - 435
Target Start/End: Complemental strand, 34817875 - 34817777
Alignment:
Q  337 gaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||| |||||| ||| |||||  ||||||||||||||||| || | || ||||||||||||||||||||||| | ||||||||||    
T  34817875 gaaaatgttacatgaacaccctttattcacacacctcattgtacaccccatgcactacgcacattttggtaaattcatctcacaaccacactttctctt 34817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 14285676 - 14285782
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||| |||||  |||| ||||||||||||||||||||||||||||| ||  ||||| ||  ||||||||||||||||||| |   ||||||||||||    
T  14285676 ggaaaatattacacaaacaccctttaatcatacaccctattgtacaccctatatattaaagatattttggtaaattcatctcagagtcatactttctctt 14285775  T
Q  436 tcatctc 442  Q
    |||||||    
T  14285776 tcatctc 14285782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 334 - 435
Target Start/End: Original strand, 1750412 - 1750513
Alignment:
Q  334 atggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctc 433  Q
    ||||||||||||||||||||| |||||| || ||||||| ||||||||||| ||| |||| |||  |||| |||| ||||||||||||| | ||||| ||    
T  1750412 atggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatc 1750511  T
Q  434 tt 435  Q
    ||    
T  1750512 tt 1750513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 4764826 - 4764727
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||| |||| | |||| || ||||||||||||||||||||||| ||||   |  ||||||||||||||||||||||| | ||||| ||||    
T  4764826 ggaaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctcacaaccacactttatctt 4764727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 30838632 - 30838731
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| |  |||| | |||||||||||||||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  30838632 ggaaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 30838731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 43335863 - 43335764
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||| ||||||||| |||| || ||||||  |||||||| |||||| |||| |||  ||||||||| ||||||||||||||| ||||| ||||    
T  43335863 ggaaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaactacactttatctt 43335764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 435
Target Start/End: Complemental strand, 13780837 - 13780736
Alignment:
Q  334 atggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctc 433  Q
    |||||||||||||||| ||||   |||| ||| |||||  |||||||||||||| ||||| |||  ||||| ||||||||||||||||| | ||||||||    
T  13780837 atggaaaatgttacatcaacacattttattcacacacctcattgtacaccccatacattagggatattttgataaattcatctcacaaccacactttctc 13780738  T
Q  434 tt 435  Q
    ||    
T  13780737 tt 13780736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 435
Target Start/End: Original strand, 16096745 - 16096846
Alignment:
Q  334 atggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctc 433  Q
    ||||||||||||||||||||| |||||| || ||||||| ||| ||||||||||| |||| |||  ||||||| | || |||||||||| | ||||| ||    
T  16096745 atggaaaatgttacatgaacaccctttattcctacaccccattatacaccccatgtattagggatattttggtgagttaatctcacaaccacactttatc 16096844  T
Q  434 tt 435  Q
    ||    
T  16096845 tt 16096846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 12302353 - 12302254
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| |  ||||||| ||||||||||| ||| |||| |||  |||| |||| ||||||||||||| | ||||| ||||    
T  12302353 ggaaaatgttacatgaacaccctttatttctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 12302254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 435
Target Start/End: Original strand, 19047158 - 19047256
Alignment:
Q  337 gaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||| |||||| || ||||  | ||||||||||| ||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  19047158 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 19047256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 432
Target Start/End: Original strand, 42026767 - 42026865
Alignment:
Q  336 ggaaaatgttacatgaacatcc--tttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttct 432  Q
    ||||||||||||||||||| ||  |||| |||||||  | |||||||| |||  |||||| |||  |||||| |||||||||||||||||| |||||||    
T  42026767 ggaaaatgttacatgaacacccaatttattcatacattccattgtacatcccgcgcattagggatattttggcaaattcatctcacaactacactttct 42026865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 43490499 - 43490402
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||| |||||| || |||| || ||||||||| | ||| |||| |||  ||||||||| ||||||||| ||| | ||||| ||||    
T  43490499 aaaatgttacatgaacaccctttattcctacatcccattgtacactctatgtattagggatattttggtaagttcatctcataaccacactttatctt 43490402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 421
Target Start/End: Complemental strand, 8896681 - 8896598
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaa 421  Q
    ||||||||||||||||| |||||| ||| |||  | ||||||||||| || || || | |  ||||||||||||||||||||||    
T  8896681 aaaatgttacatgaacaccctttattcacacattccattgtacaccctatacaataggaatattttggtaaattcatctcacaa 8896598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 422
Target Start/End: Original strand, 7070413 - 7070502
Alignment:
Q  333 tatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    |||| ||||||||||||||||| |||||| ||||||| || ||||||  | ||||  |||  |||| ||||| ||||||||||| |||||    
T  7070413 tatgaaaaatgttacatgaacaccctttattcatacatcccattgtaacctccatttattggggacattttgataaattcatcttacaac 7070502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 335 - 442
Target Start/End: Original strand, 31513286 - 31513393
Alignment:
Q  335 tggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctct 434  Q
    ||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  31513286 tggaaaatgttacatgaacactctttaatcatacaccctattgtataccccatgcattaaggatattttggtaaattcatctcacaaccatactttctct 31513385  T
Q  435 ttcatctc 442  Q
    ||||||||    
T  31513386 ttcatctc 31513393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 40236919 - 40237025
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||| ||||||||    
T  40236919 ggaaaatgttacatgaacaccctttaatcatacatcctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatattttctctt 40237018  T
Q  436 tcatctc 442  Q
    |||||||    
T  40237019 tcatctc 40237025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 337 - 442
Target Start/End: Complemental strand, 31408732 - 31408627
Alignment:
Q  337 gaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctcttt 436  Q
    |||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||  ||||||||||||||| ||||||| |||||||||||||    
T  31408732 gaaaatgttacatgaacaccctttaatcatacactctattgtacatcccatgcattaaggatattttggtaaattcatttcacaaccatactttctcttt 31408633  T
Q  437 catctc 442  Q
    ||||||    
T  31408632 catctc 31408627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 27535331 - 27535225
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||| |||||  |||| ||| ||||||||| ||||||||||||||||||||||||||    
T  27535331 ggaaaatgttacatgaacaccctttaatcatacactctattgtacactccatgtgttaaagacattttggtaatttcatctcacaactatactttctctt 27535232  T
Q  436 tcatctc 442  Q
    |||||||    
T  27535231 tcatctc 27535225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 33384870 - 33384977
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccc-tattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctct 434  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||| || |||||||||| |||| ||||||||||||||||||||||  |||||||||||    
T  33384870 ggaaaatgttacatgaacatcatttaatcatacacccctattgtatactccatgcattagggacattttggtaaattcatctcacaaacatactttctct 33384969  T
Q  435 ttcatctc 442  Q
    ||||||||    
T  33384970 ttcatctc 33384977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 338 - 435
Target Start/End: Original strand, 10573751 - 10573848
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||| |||| |||||| ||||||| |||||||||||||||||| |||| | |  ||||||||||||||||||||||| | ||||| ||||    
T  10573751 aaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattaggaatattttggtaaattcatctcacaaccacactttatctt 10573848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 435
Target Start/End: Complemental strand, 24001115 - 24001013
Alignment:
Q  333 tatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttct 432  Q
    |||||||||||||||||||||| |||||| || |||| || ||||||||||| ||| |||| |||  ||||||||| ||||||||||||| | ||||| |    
T  24001115 tatggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttat 24001016  T
Q  433 ctt 435  Q
    |||    
T  24001015 ctt 24001013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 4638297 - 4638200
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||| | |||| |||||||| | ||||||||||||||  |||| |||  ||||||||| ||||||||||||| ||||||| ||||    
T  4638297 aaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctcacaaccatactttatctt 4638200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 43343722 - 43343625
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||| |  ||||||||||||||||||||||| |||| |||  ||||| ||| ||||||||||||| | ||||| ||||    
T  43343722 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatctt 43343625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 44417032 - 44416935
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||| |  ||||||||||||||||||||||| |||| |||  ||||| ||| ||||||||||||| | ||||| ||||    
T  44417032 aaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctcacaaccacactttatctt 44416935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 335 - 435
Target Start/End: Complemental strand, 42538532 - 42538432
Alignment:
Q  335 tggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctct 434  Q
    |||||||||||||||||||| |||||| || |||| || ||||||||||| ||| |||| |||  ||||||||| ||||||||||||| | ||||| |||    
T  42538532 tggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatct 42538433  T
Q  435 t 435  Q
    |    
T  42538432 t 42538432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 24280696 - 24280597
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||| |||||| |||||| |||||||||||||| |||| |||||||| ||   |  ||||||||||||||||||||||  | ||||||||||    
T  24280696 ggaaaatgttacgtgaacaccctttattcatacaccctattctacatcccatgcactagaaatattttggtaaattcatctcacaatcacactttctctt 24280597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 422
Target Start/End: Original strand, 42972852 - 42972938
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    |||||||||||| ||||||||||||| || ||||| | |||||||||| |||| |||| |||  ||||||||| |||||||||||||    
T  42972852 ggaaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaac 42972938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 336 - 421
Target Start/End: Complemental strand, 5194331 - 5194246
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaa 421  Q
    ||||||||||||||||||| | |||| |||||||||  ||||||||||| |||  |||||||  ||||| ||||||||||||||||    
T  5194331 ggaaaatgttacatgaacaccatttattcatacacctcattgtacaccctatgttttaaggatattttgataaattcatctcacaa 5194246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 35069721 - 35069820
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||||  ||||| || ||||||  |||||||||| |||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  35069721 ggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 35069820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 336 - 422
Target Start/End: Original strand, 9216302 - 9216387
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    ||||||||||||||||||| |||||| || || | ||||||||||| |||||||||||  ||  ||||||||| |||||||||||||    
T  9216302 ggaaaatgttacatgaacaccctttattcctatatcctattgtaca-cccatgcattagagatattttggtaagttcatctcacaac 9216387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 393
Target Start/End: Original strand, 39998407 - 39998465
Alignment:
Q  335 tggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcatta 393  Q
    ||||||||||||||||||||   |||||||||||| |||||||||||||||||| ||||    
T  39998407 tggaaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtatta 39998465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 435
Target Start/End: Complemental strand, 5811030 - 5810925
Alignment:
Q  330 ttttatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactt 429  Q
    |||| ||||||||||||||||| || |||||| || ||||||| ||||||||||| ||  |||| |||  ||||| ||| ||||||||||||| | ||||    
T  5811030 ttttttggaaaatgttacatgaccaccctttattcctacaccccattgtacaccctatatattagggatattttgataagttcatctcacaaccacactt 5810931  T
Q  430 tctctt 435  Q
    | ||||    
T  5810930 tatctt 5810925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 421
Target Start/End: Original strand, 43317443 - 43317528
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaa 421  Q
    ||||||||||||||||||| | |||| |||||||||  |||||||| || |||| ||| |||  ||||| ||||||||||||||||    
T  43317443 ggaaaatgttacatgaacaccatttattcatacacctcattgtacatcctatgctttagggatattttgataaattcatctcacaa 43317528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 338 - 422
Target Start/End: Original strand, 44326180 - 44326264
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    |||||||||||| |||| |||||| ||||||| || |||||||||| |||  |||| |||  ||||||||| |||||||||||||    
T  44326180 aaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctcacaac 44326264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 5015395 - 5015494
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||||  ||||| |  ||||| | |||||||||| |||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  5015395 ggaaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 5015494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 422
Target Start/End: Complemental strand, 26898499 - 26898416
Alignment:
Q  339 aaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    |||||||||||||||| | |||| |||||||||| ||||||||  ||||| |||| |||  ||||||||| ||||||| |||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatcttacaac 26898416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 366 - 435
Target Start/End: Complemental strand, 32029887 - 32029818
Alignment:
Q  366 tacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||| ||||||||||||||| |||| |||  ||||||||||||||||| ||||| | ||||| ||||    
T  32029887 tacaccccattgtacaccccatgtattagggatattttggtaaattcatctaacaaccacactttatctt 32029818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 393
Target Start/End: Original strand, 41861674 - 41861731
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcatta 393  Q
    ||||||||||||||||||| |||||| |||||||||| ||| ||||||| ||| ||||    
T  41861674 ggaaaatgttacatgaacaccctttattcatacacccaattatacaccctatgtatta 41861731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 435
Target Start/End: Complemental strand, 38160663 - 38160580
Alignment:
Q  352 acatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||| ||| || ||||| | ||||||||||||||| |||| |||  |||| |||| ||||||||||||||| ||||| ||||    
T  38160663 acatcccttattcttacactccattgtacaccccatgtattagggatattttagtaacttcatctcacaactacactttatctt 38160580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 334 - 421
Target Start/End: Original strand, 45326018 - 45326105
Alignment:
Q  334 atggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaa 421  Q
    ||||||| |||||||| |||| | |||| ||||||| |  ||||||||||||||  |||| |||  ||||||||| ||||||||||||    
T  45326018 atggaaagtgttacataaacaccttttattcatacatcacattgtacaccccatatattagggatattttggtaagttcatctcacaa 45326105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 16180454 - 16180358
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||| |||| | |||| || ||||||| ||||||||||||| | ||||   |  ||||||||||||||||||||||| | ||||| ||||    
T  16180454 aaaatgttacatcaacaccatttattcctacaccc-attgtacaccccacgtattataaatattttggtaaattcatctcacaaccacactttatctt 16180358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 17208074 - 17208180
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||| |||||| |||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  17208074 ggaaaatgttacgtgaacaccctttaatcatacactttattgtacaccccatgcattaaggacattttggtaaattcatctcacaaccatactttctctt 17208173  T
Q  436 tcatctc 442  Q
    |||||||    
T  17208174 tcatctc 17208180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 30622818 - 30622713
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||||||||| |||||||||| ||||||||||||    
T  30622818 ggaaaatgttacatgaacatcctttaatcatacaccctattgta-agcccatgcattaaggatattttggtaaatttatctcacaaccatactttctctt 30622720  T
Q  436 tcatctc 442  Q
    |||||||    
T  30622719 tcatctc 30622713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 335 - 442
Target Start/End: Complemental strand, 32473495 - 32473388
Alignment:
Q  335 tggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctct 434  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| |||  ||||||||| ||||||||||||| |||||||||||    
T  32473495 tggaaaatgttacatgaacaccctttaatcatacaccttattgtacaccacatgcattagggatattttggtaatttcatctcacaaccatactttctct 32473396  T
Q  435 ttcatctc 442  Q
    ||||||||    
T  32473395 ttcatctc 32473388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 7617133 - 7617232
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| |||||||| | ||| ||||||||||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  7617133 ggaaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 7617232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 333 - 435
Target Start/End: Complemental strand, 2614752 - 2614650
Alignment:
Q  333 tatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttct 432  Q
    |||||||||||||||||||||| |||||| || |||| || ||||||||||| ||| |||| |||  ||||||||| ||||||||||||| | ||||| |    
T  2614752 tatggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttat 2614653  T
Q  433 ctt 435  Q
    |||    
T  2614652 ctt 2614650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 331 - 421
Target Start/End: Original strand, 38470574 - 38470664
Alignment:
Q  331 tttatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaa 421  Q
    |||| |||||||||||||| |||| |||||| |||||||  | ||||||||||||||| ||||||||  ||||||||||||||| ||||||    
T  38470574 tttaaggaaaatgttacataaacaccctttattcatacattccattgtacaccccatgtattaaggatattttggtaaattcatttcacaa 38470664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 334 - 435
Target Start/End: Original strand, 22512303 - 22512404
Alignment:
Q  334 atggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctc 433  Q
    ||||||||||||||||||||| |||||| || ||||| | ||||||||| ||||| |||| |||  ||||||||| ||||||||||||| | ||||| ||    
T  22512303 atggaaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctcacaaccacactttatc 22512402  T
Q  434 tt 435  Q
    ||    
T  22512403 tt 22512404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 33801469 - 33801568
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||||||||||| |  ||||||| ||||||||| ||||| |||| |||  |||| |||| ||||||||||||| | ||||| ||||    
T  33801469 ggaaaatgttacatgaacatcctttatttctacaccccattgtacactccatgtattagggatattttagtaagttcatctcacaaccacactttatctt 33801568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 41334763 - 41334664
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| |||||||||  ||| ||||||| ||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  41334763 ggaaaatgttacatgaacaccctttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 41334664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 338 - 435
Target Start/End: Original strand, 5256997 - 5257094
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||| |||| | |||| ||||||| || ||||||||||||||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  5256997 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctcacaaccacactttatctt 5257094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 331 - 435
Target Start/End: Original strand, 18033977 - 18034081
Alignment:
Q  331 tttatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatacttt 430  Q
    |||| ||||||||||||||||||| |||||| || ||||| | ||||||||||| ||| |||| |||  |||| |||| ||||||||||||| | |||||    
T  18033977 tttaaggaaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctcacaaccacacttt 18034076  T
Q  431 ctctt 435  Q
     ||||    
T  18034077 atctt 18034081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 336 - 408
Target Start/End: Complemental strand, 33855143 - 33855071
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaa 408  Q
    ||||||||||||||||||| |||||| || ||||||| ||||||||||||||| |||| | || |||||||||    
T  33855143 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattaggaacattttggtaa 33855071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 9434124 - 9434230
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||||||||||||    
T  9434124 ggaaaatgttacatgaacaccctttaatcatacactctattgtacaccccatgcattagggacattttggtaatttcatctcacaaccatactttctctt 9434223  T
Q  436 tcatctc 442  Q
    |||||||    
T  9434224 tcatctc 9434230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 10457992 - 10457886
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||| ||||||||||||    
T  10457992 ggaaaatgttacatgaacaccttttaatcatacaccctattgtacaccccatgcattaaggatattttggtaaatttatctcacaaccatactttctctt 10457893  T
Q  436 tcatctc 442  Q
    |||||||    
T  10457892 tcatctc 10457886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 330 - 442
Target Start/End: Original strand, 51757587 - 51757699
Alignment:
Q  330 ttttatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactt 429  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||||||||||| ||||||||| |||| |||| |||| ||||||||||||| ||||||    
T  51757587 ttttatggaaaatattacataaacaccctttaatcatacaccctattgtacacctcatgcattatggacattttagtaatttcatctcacaaccatactt 51757686  T
Q  430 tctctttcatctc 442  Q
    |||||||||||||    
T  51757687 tctctttcatctc 51757699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 25996268 - 25996374
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||||||||||| | |||||||||||||||  ||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  25996268 ggaaaatgttacatgaacaccctttaatcatacatcttattgtacaccccatatattaaggacattttggtaaattcatctcacaaccatattttctctt 25996367  T
Q  436 tcatctc 442  Q
    |||||||    
T  25996368 tcatctc 25996374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 4190365 - 4190259
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||  ||| ||||  ||  ||||||||||||||||||||||| ||||||||||||    
T  4190365 ggaaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctcacaaccatactttctctt 4190266  T
Q  436 tcatctc 442  Q
    |||||||    
T  4190265 tcatctc 4190259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 336 - 441
Target Start/End: Complemental strand, 52628077 - 52627972
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||| |||||| |||||||||||||| ||||||||||||| ||||||||||| |  ||||||||||||||||||||||  ||||||||||||    
T  52628077 ggaaaatgttacgtgaacaccctttaatcatacatcctattgtacacctcatgcattaagtatattttggtaaattcatctcacaatcatactttctctt 52627978  T
Q  436 tcatct 441  Q
    ||||||    
T  52627977 tcatct 52627972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 334 - 442
Target Start/End: Original strand, 34791827 - 34791935
Alignment:
Q  334 atggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctc 433  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||| ||| ||||||||| |||| ||||  ||| ||||||||||||| ||||||||||    
T  34791827 atggaaaatgttacatgaacaccctttaatcatacaccatattgtaaacctcatgcattagggacattttaataatttcatctcacaaccatactttctc 34791926  T
Q  434 tttcatctc 442  Q
    |||||||||    
T  34791927 tttcatctc 34791935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 333 - 422
Target Start/End: Original strand, 42100685 - 42100774
Alignment:
Q  333 tatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    |||||||||||||||||||||| |||||| || ||||||  ||||||||||||||| |||| |||  ||||||||| |||||||||||||    
T  42100685 tatggaaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctcacaac 42100774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 334 - 422
Target Start/End: Complemental strand, 45127030 - 45126942
Alignment:
Q  334 atggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    |||||||||||||||| |||| |||||| ||||||| || ||||||||||||||| |||| |||  ||||||||| |||||||||||||    
T  45127030 atggaaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctcacaac 45126942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 331 - 435
Target Start/End: Original strand, 40808860 - 40808964
Alignment:
Q  331 tttatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatacttt 430  Q
    |||| |||||||||||||| |||| | |||| || ||||||| ||||||||||||||| |||| |||  ||||||||| ||||||||||||| | |||||    
T  40808860 tttaaggaaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacacttt 40808959  T
Q  431 ctctt 435  Q
     ||||    
T  40808960 atctt 40808964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 46941053 - 46941152
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| || |||| |  ||||||||||||||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  46941053 ggaaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatctt 46941152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 330 - 436
Target Start/End: Complemental strand, 53273790 - 53273684
Alignment:
Q  330 ttttatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactt 429  Q
    ||||| ||||||||||| ||||||||| |||| || || |||  |||||||| |||||| |||| |||  ||||||||| ||||||||||||| ||||||    
T  53273790 ttttaaggaaaatgttatatgaacatcatttattcctatacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaaccatactt 53273691  T
Q  430 tctcttt 436  Q
    | |||||    
T  53273690 tatcttt 53273684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 435
Target Start/End: Original strand, 54237097 - 54237195
Alignment:
Q  337 gaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||| |||||| || |||| || ||||||||||| ||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  54237097 gaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 54237195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 435
Target Start/End: Original strand, 36150129 - 36150229
Alignment:
Q  335 tggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctct 434  Q
    |||||||||||||||||| | |||||| |||||||||| ||| ||||||| ||| || | |||  ||||||||| ||||||||||||| | ||||| |||    
T  36150129 tggaaaatgttacatgaataccctttattcatacaccccattatacaccctatgtatcagggatattttggtaagttcatctcacaaccacactttatct 36150228  T
Q  435 t 435  Q
    |    
T  36150229 t 36150229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 24688502 - 24688403
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| |  ||||| | ||||||||||| ||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  24688502 ggaaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 24688403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 25413681 - 25413780
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| || ||||||| ||||||||||  ||| |||| |||  |||| |||| ||||||||||||| | ||||| ||||    
T  25413681 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 25413780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 209
Target Start/End: Original strand, 41075636 - 41075746
Alignment:
Q  101 tgatcttaatgtgcagatttttgttgatcgacatgaccgatatgtcatttgcacttttgctaatgc--aagtgtttataatgttggtcataatgtgttca 198  Q
    ||||| ||||||| ||||||| ||||||||||||| ||||||||||||| |||| ||| ||   ||  |||||||||| ||||||||| |||| |||| |    
T  41075636 tgatcctaatgtgaagattttagttgatcgacatgcccgatatgtcattagcaccttttctggcgcgtaagtgtttattatgttggtcctaatatgttga 41075735  T
Q  199 tcctaatgtgt 209  Q
    | |||||||||    
T  41075736 ttctaatgtgt 41075746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 54246248 - 54246149
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| || ||||||| ||||||||||| ||| ||||  ||  |||| |||| ||||||||||||| | ||||| ||||    
T  54246248 ggaaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctcacaaccacactttatctt 54246149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 435
Target Start/End: Original strand, 40480750 - 40480848
Alignment:
Q  337 gaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||| |||||| |||||  ||| |||||||| || ||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  40480750 gaaaatgttacatgaacaccctttattcatatgccccattgtacatcctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 40480848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 435
Target Start/End: Complemental strand, 42394518 - 42394420
Alignment:
Q  337 gaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||| |||||| || ||||  | ||||||||||| ||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  42394518 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 42394420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 435
Target Start/End: Original strand, 27748565 - 27748662
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||| | |||| |||||||||  ||| ||||||  ||| |||| |||  ||||||||| ||||||||||||| ||||||| ||||    
T  27748565 aaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctcacaacaatactttatctt 27748662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 435
Target Start/End: Original strand, 51249350 - 51249407
Alignment:
Q  378 tacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||| |||||||||||||  ||||||||||||||||||||||| | ||||||||||    
T  51249350 tacacctcatgcattaaggatattttggtaaattcatctcacaaccacactttctctt 51249407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 338 - 435
Target Start/End: Complemental strand, 53581956 - 53581859
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||  ||||| |||||||| | |||||||| || ||| |||| |||  ||||| ||| ||||||||||||| | ||||| ||||    
T  53581956 aaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctcacaaccacactttatctt 53581859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 47191125 - 47191027
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| || ||||||  |||||||| |||||| ||||  ||  ||||| ||| ||||||||||||| | ||||| ||||    
T  47191125 ggaaaatgttacatgaacaccctttattcctacacctcattgtaca-cccatgtattagagatattttgataagttcatctcacaaccacactttatctt 47191027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 336 - 442
Target Start/End: Original strand, 33242403 - 33242509
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| | |||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||  ||||||||||||    
T  33242403 ggaaaatgttacatgaacaccatttaatcatacaccttattgtacaccccatgtattaaggacattttggtaaattcatctcacaaacatactttctctt 33242502  T
Q  436 tcatctc 442  Q
    |||||||    
T  33242503 tcatctc 33242509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 338 - 442
Target Start/End: Original strand, 27441544 - 27441648
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctttc 437  Q
    ||||||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  27441544 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctttc 27441643  T
Q  438 atctc 442  Q
    |||||    
T  27441644 atctc 27441648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 333 - 436
Target Start/End: Original strand, 33253910 - 33254013
Alignment:
Q  333 tatggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttct 432  Q
    |||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||||||||  ||||||| |    
T  33253910 tatggaaaatgttacatgaacaccatttaatcacacaccctattgtacaccccatgcattagggacatattggtaaattcatctcacaatcatactttat 33254009  T
Q  433 cttt 436  Q
    ||||    
T  33254010 cttt 33254013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 3213400 - 3213499
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||| |||| |||||| ||||||| |  ||||||||||||||| ||||||||  ||||||||||||||| ||||||| ||||||| ||||    
T  3213400 ggaaaatgttacataaacaccctttattcatacatctcattgtacaccccatgtattaaggatattttggtaaattcatttcacaaccatactttatctt 3213499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 435
Target Start/End: Complemental strand, 13743323 - 13743222
Alignment:
Q  334 atggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctc 433  Q
    ||||||||||||||||||||| | |||| ||||||| || ||||||||||||||| |||| |||  ||||||||| ||||||||||||| | ||||| ||    
T  13743323 atggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatc 13743224  T
Q  434 tt 435  Q
    ||    
T  13743223 tt 13743222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 334 - 435
Target Start/End: Complemental strand, 13748823 - 13748722
Alignment:
Q  334 atggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctc 433  Q
    ||||||||||||||||||||| | |||| ||||||| || ||||||||||||||| |||| |||  ||||||||| ||||||||||||| | ||||| ||    
T  13748823 atggaaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctcacaaccacactttatc 13748724  T
Q  434 tt 435  Q
    ||    
T  13748723 tt 13748722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 336 - 442
Target Start/End: Complemental strand, 31109322 - 31109216
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||||||||||| || ||| ||||||||||||| || |||  ||||| |||||||| || || || | | ||||||||    
T  31109322 ggaaaatgttacatgaacaccctttaatcatacatcccattatacaccccatgcactagggatattttgataaattcaacttacgaccacattttctctt 31109223  T
Q  436 tcatctc 442  Q
    |||||||    
T  31109222 tcatctc 31109216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 336 - 421
Target Start/End: Complemental strand, 7273435 - 7273350
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaa 421  Q
    ||||||||||||||||||| |||||| || |||||| |||||||||||||||| ||||  ||  ||||||||| ||||||||||||    
T  7273435 ggaaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctcacaa 7273350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 422
Target Start/End: Complemental strand, 24204085 - 24204001
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    ||||||||||||||||| | |||| || ||||||||||||||||| ||||| |||| |||  ||||||||| |||||||||||||    
T  24204085 aaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctcacaac 24204001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 9698433 - 9698334
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| || |||| || ||||||||||| ||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  9698433 ggaaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 9698334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 26670109 - 26670010
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| || ||||||  |||||||||| |||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  26670109 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 26670010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 31390411 - 31390301
Alignment:
Q  101 tgatcttaatgtgcagatttttgttgatcgacatgaccgatatgtcatttgcacttttgctaatgc--aagtgtttataatgttggtcataatgtgttca 198  Q
    ||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||| ||| ||   ||  |||||||||| ||||||||| |||| |||| |    
T  31390411 tgatcctaatgtgaagattttagttgatcgacatgaccgatatgtcattagcaccttttctggcgcgtaagtgtttattatgttggtcctaatatgttga 31390312  T
Q  199 tcctaatgtgt 209  Q
    | |||||||||    
T  31390311 ttctaatgtgt 31390301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 336 - 422
Target Start/End: Original strand, 7367549 - 7367635
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaac 422  Q
    ||||||||||| ||||||||| |||| |||||||||  |||||||| |||||| |||| |||  ||||||||| |||||||||||||    
T  7367549 ggaaaatgttatatgaacatcatttattcatacacctcattgtacatcccatgtattagggatattttggtaagttcatctcacaac 7367635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 435
Target Start/End: Original strand, 30014342 - 30014442
Alignment:
Q  335 tggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctct 434  Q
    |||||||||||||||||||| |||||| || |||| || ||| |||| |||||| |||| | |  ||||||||| ||||||||||||| ||||||| |||    
T  30014342 tggaaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctcacaaccatactttatct 30014441  T
Q  435 t 435  Q
    |    
T  30014442 t 30014442  T

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Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 21293777 - 21293678
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||| |||| |||||| |||||||    | ||||||||||||| ||||||||  ||||||||||||||| ||||||| | ||||| ||||    
T  21293777 ggaaaatgttacataaacaccctttattcatacatttcactgtacaccccatgtattaaggatattttggtaaattcatttcacaaccacactttatctt 21293678  T

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Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 26466799 - 26466898
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||| |||| |||||| || ||||||| ||||||||| ||||| |||| ||   ||||||||| ||||||||||||| | ||||| ||||    
T  26466799 ggaaaatgttacataaacaccctttattcctacaccccattgtacactccatgtattagggttattttggtaagttcatctcacaaccacactttatctt 26466898  T

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Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 7292747 - 7292846
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||| ||||| | |||| |||||||||  ||| ||||||| ||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  7292747 ggaaaatgttacaagaacaccatttattcatacacctcattatacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 7292846  T

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Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 21279929 - 21280028
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| |  ||||  | |||| ||| |||||| |||| |||  ||||||||||||||||||||||| | ||||| ||||    
T  21279929 ggaaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctcacaaccacactttatctt 21280028  T

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Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 338 - 421
Target Start/End: Original strand, 30735984 - 30736067
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaa 421  Q
    |||||||||||||||||   |||| || ||||||| |||||||||| |||| ||||  ||  ||||||||| ||||||||||||    
T  30735984 aaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctcacaa 30736067  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 12839281 - 12839252
Alignment:
Q  222 gggagcacccaaggactgtttgtgtgtgct 251  Q
    ||||||||||||||||||||||||||||||    
T  12839281 gggagcacccaaggactgtttgtgtgtgct 12839252  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 25552841 - 25552812
Alignment:
Q  222 gggagcacccaaggactgtttgtgtgtgct 251  Q
    ||||||||||||||||||||||||||||||    
T  25552841 gggagcacccaaggactgtttgtgtgtgct 25552812  T

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Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 25994007 - 25993978
Alignment:
Q  222 gggagcacccaaggactgtttgtgtgtgct 251  Q
    ||||||||||||||||||||||||||||||    
T  25994007 gggagcacccaaggactgtttgtgtgtgct 25993978  T

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Target: scaffold0003 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 338 - 442
Target Start/End: Complemental strand, 45817 - 45713
Alignment:
Q  338 aaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctttc 437  Q
    ||||||||||||||||| |||||||||||||||||||||||||| || ||| ||||||||  ||||||||||||||||||||||| ||||||||||||||    
T  45817 aaaatgttacatgaacaccctttaatcatacaccctattgtacatcctatgtattaaggatattttggtaaattcatctcacaaccatactttctctttc 45718  T
Q  438 atctc 442  Q
    |||||    
T  45717 atctc 45713  T

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Target: scaffold0100 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 335 - 442
Target Start/End: Complemental strand, 35557 - 35450
Alignment:
Q  335 tggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctct 434  Q
    ||||||||||||||| |||| | |||||||||||||| ||||||||||||||||||||| |||| | ||||||||||||||||||||| |||||||||||    
T  35557 tggaaaatgttacataaacaccatttaatcatacaccatattgtacaccccatgcattagggacatattggtaaattcatctcacaaccatactttctct 35458  T
Q  435 ttcatctc 442  Q
    ||||||||    
T  35457 ttcatctc 35450  T

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Target: scaffold0385 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 11251 - 11350
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||| |||||||||  ||||| |||||||||| ||||||||||||||  |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  11251 ggaaaatgtcacatgaacacactttattcatacaccccattgtacaccccatatattagggatattttggtaagttcatctcacaaccacactttatctt 11350  T

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Target: scaffold0119 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 435
Target Start/End: Original strand, 685 - 784
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| || ||||||  |||||||||| |||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  685 ggaaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctcacaaccacactttatctt 784  T

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Target: scaffold0038 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 337 - 435
Target Start/End: Original strand, 112656 - 112754
Alignment:
Q  337 gaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    |||||||||||||||||| |||||| || ||||  | ||||||||||| ||| |||| |||  ||||||||| ||||||||||||| | ||||| ||||    
T  112656 gaaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctcacaaccacactttatctt 112754  T

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Target: scaffold0187 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 14288 - 14189
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| |  ||||||| |||||||| || ||| |||| |||  |||| |||| ||||||||||||| | ||||| ||||    
T  14288 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 14189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 336 - 435
Target Start/End: Complemental strand, 24616 - 24517
Alignment:
Q  336 ggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaactatactttctctt 435  Q
    ||||||||||||||||||| |||||| |  ||||||| |||||||| || ||| |||| |||  |||| |||| ||||||||||||| | ||||| ||||    
T  24616 ggaaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctcacaaccacactttatctt 24517  T

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Target: scaffold0157 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 421
Target Start/End: Complemental strand, 23522 - 23436
Alignment:
Q  335 tggaaaatgttacatgaacatcctttaatcatacaccctattgtacaccccatgcattaaggacgttttggtaaattcatctcacaa 421  Q
    |||||||||||| ||||||| |||||| || ||||| | |||||||| |||||| ||||  ||  ||||||||| ||||||| ||||    
T  23522 tggaaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatcttacaa 23436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Complemental strand, 188244 - 188215
Alignment:
Q  222 gggagcacccaaggactgtttgtgtgtgct 251  Q
    ||||||||||||||||||||||||||||||    
T  188244 gggagcacccaaggactgtttgtgtgtgct 188215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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