View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16658_low_15 (Length: 446)

Name: NF16658_low_15
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16658_low_15
NF16658_low_15
[»] chr2 (5 HSPs)
chr2 (10-341)||(12597401-12597712)
chr2 (114-223)||(23650809-23650919)
chr2 (128-249)||(27480605-27480726)
chr2 (128-249)||(26740986-26741106)
chr2 (297-341)||(35948134-35948178)
[»] chr6 (6 HSPs)
chr6 (42-426)||(5592918-5593296)
chr6 (179-232)||(28157510-28157563)
chr6 (128-231)||(16409263-16409366)
chr6 (179-231)||(28113202-28113251)
chr6 (296-343)||(27985746-27985793)
chr6 (129-231)||(8836530-8836632)
[»] chr8 (7 HSPs)
chr8 (86-423)||(31004032-31004365)
chr8 (48-219)||(10644910-10645081)
chr8 (41-231)||(9025098-9025285)
chr8 (94-226)||(16646983-16647115)
chr8 (50-244)||(26470762-26470947)
chr8 (128-242)||(34119114-34119229)
chr8 (311-371)||(17838853-17838913)
[»] chr1 (5 HSPs)
chr1 (98-249)||(26807330-26807481)
chr1 (181-244)||(13783131-13783194)
chr1 (181-244)||(41078827-41078891)
chr1 (297-339)||(26807242-26807284)
chr1 (297-343)||(33027273-33027319)
[»] chr7 (7 HSPs)
chr7 (48-162)||(20996847-20996961)
chr7 (294-423)||(19840671-19840800)
chr7 (98-201)||(19402314-19402416)
chr7 (299-388)||(45586250-45586338)
chr7 (294-373)||(20996634-20996713)
chr7 (131-249)||(23375185-23375301)
chr7 (308-388)||(16424285-16424365)
[»] chr4 (10 HSPs)
chr4 (128-231)||(42473374-42473477)
chr4 (142-231)||(10246753-10246840)
chr4 (63-223)||(39492787-39492948)
chr4 (132-224)||(17813160-17813252)
chr4 (306-426)||(28028807-28028924)
chr4 (185-244)||(26167127-26167186)
chr4 (30-107)||(17813229-17813306)
chr4 (396-426)||(9935388-9935418)
chr4 (302-343)||(30039484-30039525)
chr4 (150-206)||(20343608-20343664)
[»] chr3 (2 HSPs)
chr3 (131-243)||(36921491-36921603)
chr3 (132-220)||(25466936-25467024)
[»] chr5 (4 HSPs)
chr5 (179-230)||(12673218-12673269)
chr5 (172-231)||(26150139-26150199)
chr5 (128-220)||(1825734-1825826)
chr5 (297-425)||(26149951-26150079)
[»] scaffold0003 (2 HSPs)
scaffold0003 (308-388)||(12997-13077)
scaffold0003 (297-341)||(319514-319558)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 341
Target Start/End: Original strand, 12597401 - 12597712
Alignment:
Q  10 ataattctatgaaaatataatcgattattttctattatatttggttaatccgttcttaatgctttttatgtgattgatgagtactaaccctaactttgat 109  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12597401 ataattctatgaaaatataatcgattattttctattatatttagttaatccgttcttaatgctttctatgtgattgatgagtactaaccctaactttgat 12597500  T
Q  110 ccataaatcgaataataagtcacaatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagta 209  Q
    ||||||||||||||||| |||||||||||||||||||||||||||                  ||||| |||||||||||||||||||||||||||||||    
T  12597501 ccataaatcgaataataggtcacaatgagtactaaccctaacttt------------------aaccgttcaattattgattagatttagacataaagta 12597582  T
Q  210 ataataattgttacttactttggcgtgcttaaaccatcaattggtttggattcaagcctaggttatagggagtgatataattgatggagagtgttagtga 309  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| |||||||    
T  12597583 ataataattgttacttattttggcgtgcttaaaccatcaattggtttggattcaagcctaggttatagggagtg--ataattgagggagagtattagtga 12597680  T
Q  310 ccaatacattaacctaactattttgatcaaat 341  Q
    ||||||||||||||||||||||||||||||||    
T  12597681 ccaatacattaacctaactattttgatcaaat 12597712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 114 - 223
Target Start/End: Original strand, 23650809 - 23650919
Alignment:
Q  114 aaatcgaataataagtca-caatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaata 212  Q
    |||||||| ||||||||| |||||| | |||||| |||||||| | |||| || |   |||| | ||||||||||||||||||||||||||||| |||||    
T  23650809 aaatcgaacaataagtcatcaatgattgctaaccttaactttgctagcttgaccttgtttaatcaatcaattattgattagatttagacataaactaata 23650908  T
Q  213 ataattgttac 223  Q
    |||||||||||    
T  23650909 ataattgttac 23650919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 27480605 - 27480726
Alignment:
Q  128 gtcacaatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataattgttacttac 227  Q
    ||||||||||||||||||||||||||||||| | | || ||  ||||  | || | | ||||||||||||||||||||| |||| ||| ||||| |||||    
T  27480605 gtcacaatgagtactaaccctaactttgttgacatgacctatgttaatggttctagtgttgattagatttagacataaattaatgatagttgttgcttac 27480704  T
Q  228 tttggcgtgcttaaaccatcaa 249  Q
    |||| ||| |||||||| ||||    
T  27480705 tttgacgttcttaaaccttcaa 27480726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 128 - 249
Target Start/End: Original strand, 26740986 - 26741106
Alignment:
Q  128 gtcacaatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataattgttacttac 227  Q
    |||||||||| |||||||||||| | || |||||| || ||  ||||| | |||||||||||||||| ||||||||||| |||| ||||||| ||||||     
T  26740986 gtcacaatgattactaaccctaattgtgatggctttacctattttaactgttcaattattgattagagttagacataaactaatgataattg-tacttaa 26741084  T
Q  228 tttggcgtgcttaaaccatcaa 249  Q
    |||| | | |||||||| ||||    
T  26741085 tttgacattcttaaaccttcaa 26741106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 35948178 - 35948134
Alignment:
Q  297 agagtgttagtgaccaatacattaacctaactattttgatcaaat 341  Q
    ||||||||||||||||| |||||  | ||||||||||||||||||    
T  35948178 agagtgttagtgaccaagacattggcttaactattttgatcaaat 35948134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 1e-82; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 42 - 426
Target Start/End: Complemental strand, 5593296 - 5592918
Alignment:
Q  42 tattatatttggttaatccgttcttaatgctttttatgtgattgatgagtactaaccctaactttgatccataaatcgaataataagtcacaatgagtac 141  Q
    |||| ||||||||||| ||||| |||||| ||  ||||||||  ||||||| ||||| |||||||||| |||||| | ||||| ||||||||||||||||    
T  5593296 tattctatttggttaacccgttgttaatgtttactatgtgatcaatgagtaataacc-taactttgattcataaaccaaataacaagtcacaatgagtac 5593198  T
Q  142 taaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataat---tgttacttactttggcgtgct 238  Q
    |||||||||||||||| |||| ||  |  ||||||  ||| ||||| |||||||||||||||||| ||||||||||   |||||||||||||||||| ||    
T  5593197 taaccctaactttgttagcttgacccagtttaaccattcatttattcattagatttagacataaactaataataataattgttacttactttggcgttct 5593098  T
Q  239 taaaccatcaattggtttggattcaagcctaggttatagggagtgatataattgatggagagtgttagtgaccaatacattaacctaactattttgatca 338  Q
    ||||||  || ||||||||||||||||||||||||||||||||||  |||| || |||||||||||||| ||||| ||||||||||||||||||||||||    
T  5593097 taaacctccagttggtttggattcaagcctaggttatagggagtg--ataaatgttggagagtgttagtaaccaaaacattaacctaactattttgatca 5593000  T
Q  339 aatgtattggaaacaaataatcaatagcattgtattaatagtttttagttcctcagttaattcagggaaggaaatctaacatgaccta 426  Q
    |||||||| ||||||||||      ||||  ||||| |||| || ||||| |||| |||||||| | ||| |||||| ||||||||||    
T  5592999 aatgtattagaaacaaata------agcagcgtattcatagattgtagttactcaattaattcaagaaagcaaatctgacatgaccta 5592918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 28157563 - 28157510
Alignment:
Q  179 tcaattattgattagatttagacataaagtaataataattgttacttactttgg 232  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28157563 tcaattattgattagatttagacataaaataataataattgttacttactttgg 28157510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 16409263 - 16409366
Alignment:
Q  128 gtcacaatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataattgttacttac 227  Q
    |||||||||| ||  ||| ||||||||||||||||| | ||  |||  || ||| ||||||||||||||||||||||   |||| |||||||||||||||    
T  16409263 gtcacaatgattatcaactctaactttgttggcttagcctattttaggcgttcagttattgattagatttagacataggctaatgataattgttacttac 16409362  T
Q  228 tttg 231  Q
    ||||    
T  16409363 tttg 16409366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 28113251 - 28113202
Alignment:
Q  179 tcaattattgattagatttagacataaagtaataataattgttacttactttg 231  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||||    
T  28113251 tcaattattgattagatttagacata---taataataattgttacttactttg 28113202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 343
Target Start/End: Complemental strand, 27985793 - 27985746
Alignment:
Q  296 gagagtgttagtgaccaatacattaacctaactattttgatcaaatgt 343  Q
    |||||||||||||||||| || || |||||||||||||||||||||||    
T  27985793 gagagtgttagtgaccaagactttgacctaactattttgatcaaatgt 27985746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 231
Target Start/End: Original strand, 8836530 - 8836632
Alignment:
Q  129 tcacaatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataattgttacttact 228  Q
    ||||||||||||||||||||| ||||  || ||  |||||  |||| || || | ||||||||| ||||||||||||| |||| ||| || ||||||| |    
T  8836530 tcacaatgagtactaaccctatctttactgtctagacttattttaatcgttctactattgattatatttagacataaactaatgatagttcttacttagt 8836629  T
Q  229 ttg 231  Q
    |||    
T  8836630 ttg 8836632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 86 - 423
Target Start/End: Complemental strand, 31004365 - 31004032
Alignment:
Q  86 atgagtactaaccctaactttgatccataaatcgaataataagtcacaatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaatta 185  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |  ||  |||| |  |||||||    
T  31004365 atgagtattaaccctagctttggtccataaatcgaataataagtcacaatgattactaaccctaactttgtaggcttgatctagtttaatcattcaatta 31004266  T
Q  186 ttgattagatttagacataaagtaataataattgttacttactttggcgtgcttaaaccatcaa-ttggtttggattcaagcctaggtta-tagggagtg 283  Q
    |||||||||||||||||||||  ||||||||||||||||||||| || || |||||||| |||| ||||||  |  |||  |||| || | |||||||||    
T  31004265 ttgattagatttagacataaa--aataataattgttacttacttgggtgttcttaaaccttcaaattggttaaggctca--cctaagtcagtagggagtg 31004170  T
Q  284 atat-aattgatggagagtgttagtgaccaatacattaacctaactattttgatcaaatgtattggaaacaaataatcaatagcattgtattaatagttt 382  Q
      |  ||||||   |||||||||||||  || ||||| | ||||||||||||||||||||||||| |||||| |||| | |||||||||||| |||||||    
T  31004169 tgaccaattga---agagtgttagtgagaaagacattgaactaactattttgatcaaatgtattgaaaacaagtaataagtagcattgtattcatagttt 31004073  T
Q  383 ttagttcctcagttaattcagggaaggaaatctaacatgac 423  Q
     | ||| |||| ||||||||||||||||||||||| |||||    
T  31004072 gttgttactcaattaattcagggaaggaaatctaaaatgac 31004032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 48 - 219
Target Start/End: Complemental strand, 10645081 - 10644910
Alignment:
Q  48 atttggttaatccgttcttaatgctttttatgtgattgatgagtactaaccctaactttgatccataaatcgaataataagtcacaatgagtactaaccc 147  Q
    ||||||| ||||  ||||||||| ||| ||||||||  |||||| ||||| ||||||||| |  ||||||| ||| | ||||||||||||||||||||||    
T  10645081 atttggtcaatctattcttaatgttttctatgtgatcaatgagttctaactctaactttggtatataaatctaatgaaaagtcacaatgagtactaaccc 10644982  T
Q  148 taactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataattg 219  Q
    ||||||||||||| | |||||  ||||||  ||  ||||||||||||| |||||||||| ||||||||||||    
T  10644981 taactttgttggcatgacttagtttaaccattcggttattgattagatctagacataaaataataataattg 10644910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 41 - 231
Target Start/End: Complemental strand, 9025285 - 9025098
Alignment:
Q  41 ctattatatttggttaatcc-gttcttaatgctttttatgtgattgatgagtactaaccctaactttgatccataaatcgaataataagtcacaatgagt 139  Q
    ||||| ||| |||||||||  ||||||||||||||||||||  |  |||||||||||||| ||||||| ||||||||| || |  || ||   ||||| |    
T  9025285 ctattttatctggttaatcttgttcttaatgctttttatgtactcaatgagtactaacccaaactttgttccataaattgagtt-taggt---aatgatt 9025190  T
Q  140 actaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataattgttacttactttg 231  Q
    | |||||||||||||||||| || || ||  ||||||| |||||||||||||||||||||| ||||| |||  ||| |||||||||||||||    
T  9025189 attaaccctaactttgttggttttacctattttaaccgttcaattattgattagatttagaaataaactaacgatacttgttacttactttg 9025098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 226
Target Start/End: Complemental strand, 16647115 - 16646983
Alignment:
Q  94 taaccctaactttgatccataaatcgaataataagtcacaatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattag 193  Q
    |||||||||||||| |||||||||| |||  || |||||||||| || ||||| ||| ||||||||||| || ||  ||||||  |||||||||  |||     
T  16647115 taaccctaactttgttccataaatc-aattttaggtcacaatgattattaaccataattttgttggcttcacctattttaaccattcaattattacttaa 16647017  T
Q  194 attta-gacataaagtaataataattgttactta 226  Q
    ||||| ||| |||| |||||||||||||||||||    
T  16647016 atttaagacgtaaactaataataattgttactta 16646983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 244
Target Start/End: Original strand, 26470762 - 26470947
Alignment:
Q  50 ttggttaatccgttcttaatgctttttatgtgattgatgagtactaaccctaactttgatccataaatcgaataataagtcacaatgagtactaacccta 149  Q
    ||||||||||| ||||||||||||||||| |||   ||||||| ||||||||||| |  || ||||||||| || || || |||||||  |||||||||     
T  26470762 ttggttaatccattcttaatgctttttatatgacc-atgagtaataaccctaactatattctataaatcgattattaggtgacaatgaagactaaccct- 26470859  T
Q  150 actttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataattgttacttactttggcgtgcttaaacc 244  Q
           || ||| || ||  ||||||  |||||  ||| ||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||    
T  26470860 -------tgccttgacctagtttaaccattcaatagttggttagatttaaacataaactaataataattgttactcactttggcgttcttaaacc 26470947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 242
Target Start/End: Complemental strand, 34119229 - 34119114
Alignment:
Q  128 gtcacaatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattatt-gattagatttagacataaagtaataataattgttactta 226  Q
    ||||||||||||||||||| ||||||||| |||| || |||  || | |  || | |||| ||||||||||||||||||| |||| |||||||||| |||    
T  34119229 gtcacaatgagtactaaccataactttgtcggctgaaattatttttatcattccactatttgattagatttagacataaactaatgataattgttaatta 34119130  T
Q  227 ctttggcgtgcttaaa 242  Q
      ||||||| ||||||    
T  34119129 acttggcgttcttaaa 34119114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 17838853 - 17838913
Alignment:
Q  311 caatacattaacctaactattttgatcaaatgtattggaaacaaataatcaatagcattgt 371  Q
    ||||||||| |||||||||||||| ||||| |||||| || ||| ||||||||| ||||||    
T  17838853 caatacattgacctaactattttgttcaaaggtattgaaatcaagtaatcaatatcattgt 17838913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 98 - 249
Target Start/End: Complemental strand, 26807481 - 26807330
Alignment:
Q  98 cctaactttgatccataaatcgaataataagtcacaatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagattt 197  Q
    |||||||||| ||||||||||||||| ||||||||||||| ||||||||  |||||||||||||| || ||  ||||||  |||||||||||||||||||    
T  26807481 cctaactttggtccataaatcgaatattaagtcacaatgattactaaccacaactttgttggcttgacctagtttaaccattcaattattgattagattt 26807382  T
Q  198 agacataaagtaataataattgttacttactttggcgtgcttaaaccatcaa 249  Q
    | ||||||| ||||| ||||| |||||||||||||||| |||||||| ||||    
T  26807381 atacataaactaatattaatttttacttactttggcgttcttaaaccttcaa 26807330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 13783131 - 13783194
Alignment:
Q  181 aattattgattagatttagacataaagtaataataattgttacttactttggcgtgcttaaacc 244  Q
    |||||||||||| ||||| || |||| |||||||||||||||||||||||||||  ||||||||    
T  13783131 aattattgattacatttatacgtaaactaataataattgttacttactttggcgctcttaaacc 13783194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 181 - 244
Target Start/End: Original strand, 41078827 - 41078891
Alignment:
Q  181 aattattgattagatttagacataaagtaataataattgt-tacttactttggcgtgcttaaacc 244  Q
    |||||||||||||||||||||||||| |||| |||||||| ||||||||||| | | ||||||||    
T  41078827 aattattgattagatttagacataaactaatgataattgtgtacttactttgacattcttaaacc 41078891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 26807284 - 26807242
Alignment:
Q  297 agagtgttagtgaccaatacattaacctaactattttgatcaa 339  Q
    ||||||||||||||||| ||||| |||||||||||||||||||    
T  26807284 agagtgttagtgaccaagacattgacctaactattttgatcaa 26807242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 343
Target Start/End: Complemental strand, 33027319 - 33027273
Alignment:
Q  297 agagtgttagtgaccaatacattaacctaactattttgatcaaatgt 343  Q
    ||||||||||||||||| |||||  |||||||| |||||||||||||    
T  33027319 agagtgttagtgaccaagacattggcctaactactttgatcaaatgt 33027273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 162
Target Start/End: Complemental strand, 20996961 - 20996847
Alignment:
Q  48 atttggttaatccgttcttaatgctttttatgtgattgatgagtactaaccctaactttgatccataaatcgaataataagtcacaatgagtactaaccc 147  Q
    ||||||||||   |||||||||||||||||||||||  ||| | |||||||||||||||| | ||||||||||  |||| |||||||||| ||||||| |    
T  20996961 atttggttaacatgttcttaatgctttttatgtgatcaatgtgaactaaccctaactttgttacataaatcgataaataggtcacaatgattactaactc 20996862  T
Q  148 taactttgttggctt 162  Q
    | |||||||||||||    
T  20996861 tgactttgttggctt 20996847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 294 - 423
Target Start/End: Complemental strand, 19840800 - 19840671
Alignment:
Q  294 tggagagtgttagtgaccaatacattaacctaactattttgatcaaatgtattggaaacaaataatcaatagcattgtattaatagtttttagttcctca 393  Q
    |||||||||||||||||||| |||||  ||||||||||||| ||||| ||||||||| ||| |||||| ||| ||  |||  ||| ||| ||||| ||||    
T  19840800 tggagagtgttagtgaccaagacattggcctaactattttgttcaaaagtattggaatcaagtaatcagtagtatgatatgcatattttgtagttactca 19840701  T
Q  394 gttaattcagggaaggaaatctaacatgac 423  Q
      ||||||| |||||||||| | |||||||    
T  19840700 actaattcatggaaggaaatttgacatgac 19840671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 98 - 201
Target Start/End: Original strand, 19402314 - 19402416
Alignment:
Q  98 cctaactttgatccataaatcgaataataagtcacaatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagattt 197  Q
    |||||||||| || |||||| ||||||||||||||||||| ||||||||||| |||||   | ||||||||  |||||   ||||||||||||||||| |    
T  19402314 cctaactttgttc-ataaattgaataataagtcacaatgattactaaccctagctttgcaagtttaacttagtttaactattcaattattgattagatgt 19402412  T
Q  198 agac 201  Q
    ||||    
T  19402413 agac 19402416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 299 - 388
Target Start/End: Complemental strand, 45586338 - 45586250
Alignment:
Q  299 agtgttagtgaccaatacattaacctaactattttgatcaaatgtattggaaacaaataatcaatagcattgtattaatagtttttagtt 388  Q
    |||||||||| |||| |||| | ||||| ||||||||||||| |||||| ||| || |||||||||| | |||||| ||||||| |||||    
T  45586338 agtgttagtggccaaaacataaccctaagtattttgatcaaaggtattgaaaataagtaatcaatagtactgtatt-atagtttgtagtt 45586250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 373
Target Start/End: Complemental strand, 20996713 - 20996634
Alignment:
Q  294 tggagagtgttagtgaccaatacattaacctaactattttgatcaaatgtattggaaacaaataatcaatagcattgtat 373  Q
    |||||| ||||||||||||| |||||  ||||  ||||||| ||||| |||||| || ||| |||||| |||||||||||    
T  20996713 tggagactgttagtgaccaagacattggcctacttattttgttcaaaggtattgaaatcaagtaatcagtagcattgtat 20996634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 249
Target Start/End: Complemental strand, 23375301 - 23375185
Alignment:
Q  131 acaatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataattgttacttacttt 230  Q
    ||||||| ||||||||||||||  |||| ||| || ||  |||||   ||||||||| ||||| |||||||||||| |||| |||||| ||||||| |||    
T  23375301 acaatgattactaaccctaact--gttgccttgacctattttaacttttcaattattaattaggtttagacataaactaatgataattattacttatttt 23375204  T
Q  231 ggcgtgcttaaaccatcaa 249  Q
    || || ||| |||| ||||    
T  23375203 ggtgttcttgaaccttcaa 23375185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 16424365 - 16424285
Alignment:
Q  308 gaccaatacattaacctaactattttgatcaaatgtattggaaacaaataatcaatagcattgtattaatagtttttagtt 388  Q
    ||||||| ||||  ||||| |||| ||||||||||||||  || | |||||||||||| |||||| |||||| || |||||    
T  16424365 gaccaatgcattggcctaattattatgatcaaatgtatttaaatcgaataatcaataggattgtaataatagattatagtt 16424285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 231
Target Start/End: Complemental strand, 42473477 - 42473374
Alignment:
Q  128 gtcacaatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataattgttacttac 227  Q
    |||||| ||| || ||||| ||||||||||||||| ||  |  |||||   |||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  42473477 gtcacattgattattaaccataactttgttggcttgacccattttaacttctcaattattgattatatttagacataaactaataataattgttacttac 42473378  T
Q  228 tttg 231  Q
    ||||    
T  42473377 tttg 42473374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 10246840 - 10246753
Alignment:
Q  142 taaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataattgttacttactttg 231  Q
    ||||| ||||||||||||||| || || |||||||  ||||||||||||||| | |||||||||| |||||||||||| |||||||||||    
T  10246840 taaccttaactttgttggcttgacctatcttaacct-tcaattattgattaggtgtagacataaattaataataattg-tacttactttg 10246753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 63 - 223
Target Start/End: Original strand, 39492787 - 39492948
Alignment:
Q  63 tcttaatgctttttatgtgattgatgagtactaaccctaactttgatccataaatcgaataataagtca-caatgagtactaaccctaactttgttggct 161  Q
    |||||||| ||||||||| ||  ||||  |||||||||||| | | |   |||||| |||||||| ||| |||||| |||||||||||| |||| |||||    
T  39492787 tcttaatgttttttatgtaatcaatgatcactaaccctaacatcggttagtaaatcaaataataattcatcaatgattactaaccctaaatttggtggct 39492886  T
Q  162 taacttaacttaaccgatcaattattgattagatttagacataaagtaataataattgttac 223  Q
    | || ||  |||||| | ||||||| |||||||||||||||||||  | |||||||| ||||    
T  39492887 tgacctactttaaccaaccaattatcgattagatttagacataaaccattaataatttttac 39492948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 132 - 224
Target Start/End: Complemental strand, 17813252 - 17813160
Alignment:
Q  132 caatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataattgttact 224  Q
    |||||| |||| |||||||||||| ||| || || ||  |||| |  |||||||||||||||||||||||||||| |||||||| ||||||||    
T  17813252 caatgattacttaccctaactttgctgggttgacctagtttaatcattcaattattgattagatttagacataaactaataatacttgttact 17813160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 306 - 426
Target Start/End: Complemental strand, 28028924 - 28028807
Alignment:
Q  306 gtgaccaatacattaacctaactattttgatcaaatgtattggaaacaaataatcaatagcattgtattaatagtttttagttcctcagttaattcaggg 405  Q
    |||||||| |||||   |||||||||||||||||| |||||| |||    ||||| ||||||||||||| ||||||| |||||  ||| |||||| | ||    
T  28028924 gtgaccaagacattggtctaactattttgatcaaaagtattgaaaag---taatcgatagcattgtattcatagtttgtagttaatcaattaattgatgg 28028828  T
Q  406 aaggaaatctaacatgaccta 426  Q
    || |||||||| |||||||||    
T  28028827 aatgaaatctagcatgaccta 28028807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 26167127 - 26167186
Alignment:
Q  185 attgattagatttagacataaagtaataataattgttacttactttggcgtgcttaaacc 244  Q
    |||||||||||||||||||||| |||| ||| |||||||||| |||| ||| ||||||||    
T  26167127 attgattagatttagacataaactaatgatagttgttacttagtttgacgttcttaaacc 26167186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 17813306 - 17813229
Alignment:
Q  30 tcgattattttctattatatttggttaatccgttcttaatgctttttatgtgattgatgagtactaaccctaactttg 107  Q
    ||||||| ||| |||| |||||||||| || ||||||||||||||| |||| ||  |||| |||| ||||||||||||    
T  17813306 tcgattactttgtattttatttggttattcagttcttaatgcttttcatgtcatcaatgattacttaccctaactttg 17813229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 426
Target Start/End: Original strand, 9935388 - 9935418
Alignment:
Q  396 taattcagggaaggaaatctaacatgaccta 426  Q
    |||||||||||||||||||||||||||||||    
T  9935388 taattcagggaaggaaatctaacatgaccta 9935418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 343
Target Start/End: Complemental strand, 30039525 - 30039484
Alignment:
Q  302 gttagtgaccaatacattaacctaactattttgatcaaatgt 343  Q
    |||||||||||| ||| | |||||||||||||||||||||||    
T  30039525 gttagtgaccaagacaatgacctaactattttgatcaaatgt 30039484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 20343608 - 20343664
Alignment:
Q  150 actttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaa 206  Q
    |||||||||| || || ||  ||||||  ||||||||||||||||||||||||||||    
T  20343608 actttgttggtttgacctattttaaccattcaattattgattagatttagacataaa 20343664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 36921603 - 36921491
Alignment:
Q  131 acaatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataattgttacttacttt 230  Q
    ||||||| || ||||||||||||||||||| | || ||   |||||| | | |||||||||||||||||||||||| |||| |||||||||| ||| |||    
T  36921603 acaatgattattaaccctaactttgttggcctgacctattataaccgtttagttattgattagatttagacataaactaatgataattgttatttatttt 36921504  T
Q  231 ggcgtgcttaaac 243  Q
    ||| | |||||||    
T  36921503 ggcattcttaaac 36921491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 132 - 220
Target Start/End: Complemental strand, 25467024 - 25466936
Alignment:
Q  132 caatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataattgt 220  Q
    |||||| ||||||||||||||| |||||||  || ||  ||||| | | |||||||||||||||||||||||||| |||  ||||||||    
T  25467024 caatgattactaaccctaacttggttggctcgacatattttaactggttaattattgattagatttagacataaactaaagataattgt 25466936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 12673269 - 12673218
Alignment:
Q  179 tcaattattgattagatttagacataaagtaataataattgttacttacttt 230  Q
    ||||||||||||| |||||||||||||| ||||||||||| ||| |||||||    
T  12673269 tcaattattgatttgatttagacataaactaataataatttttagttacttt 12673218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 172 - 231
Target Start/End: Complemental strand, 26150199 - 26150139
Alignment:
Q  172 taaccgatcaattattgattagatttagaca-taaagtaataataattgttacttactttg 231  Q
    |||||||||||||||||||||| |||||| | |||| |||| |||||||||| ||||||||    
T  26150199 taaccgatcaattattgattaggtttagatattaaactaatgataattgttaattactttg 26150139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 220
Target Start/End: Original strand, 1825734 - 1825826
Alignment:
Q  128 gtcacaatgagtactaaccctaactttgttggcttaacttaacttaaccgatcaattattgattagatttagacataaagtaataataattgt 220  Q
    |||||||||  | ||||| || |||||| |||||| |||||  ||||  | ||||||||||||||| |||||||||||| || | ||||||||    
T  1825734 gtcacaatggttgctaactcttactttgatggcttgacttattttaattgttcaattattgattagctttagacataaactattgataattgt 1825826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 425
Target Start/End: Complemental strand, 26150079 - 26149951
Alignment:
Q  297 agagtgttagtgaccaatacattaacctaactattttgatcaaatgtattggaaacaaataatcaatagcattgtattaatagtttttagttcctcagtt 396  Q
    |||| |||||||||||| |||||  | ||| ||||||| |||||  | ||  || |||||||||||||| |||||||| ||| ||| ||||| ||||  |    
T  26150079 agagagttagtgaccaagacattgtcataagtattttgttcaaaaattttaaaatcaaataatcaatagaattgtattcataatttgtagttactcaaat 26149980  T
Q  397 aattcagggaaggaaatctaacatgacct 425  Q
    |||||||  || ||||||| |||| ||||    
T  26149979 aattcagtaaatgaaatctgacataacct 26149951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 13077 - 12997
Alignment:
Q  308 gaccaatacattaacctaactattttgatcaaatgtattggaaacaaataatcaatagcattgtattaatagtttttagtt 388  Q
    ||||||| ||||  ||||| |||| ||||||||||||||  || | |||||||||||| |||||| |||||| || |||||    
T  13077 gaccaatgcattggcctaattattatgatcaaatgtatttaaatcgaataatcaataggattgtaataatagattatagtt 12997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 319514 - 319558
Alignment:
Q  297 agagtgttagtgaccaatacattaacctaactattttgatcaaat 341  Q
    |||| |||||||||||| |||||| |||||| |||||||||||||    
T  319514 agagagttagtgaccaagacattagcctaaccattttgatcaaat 319558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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