View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16658_low_18 (Length: 415)
Name: NF16658_low_18
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 186 - 371
Target Start/End: Complemental strand, 31409850 - 31409665
Alignment:
| Q |
186 |
atcgtttccacccttacaatagtaactacctccttctcatctcatccaatcttatctcttcaatctctatatcaatcttattttcaaagttgacttcagt |
285 |
Q |
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| T |
31409850 |
atcgtttccacccttacaatagtaactacctccttctcatctcatccaatcttatctcttcaatctctatatcaatcttattttcaaagttgacttcagt |
31409751 |
T |
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| Q |
286 |
ctataagtatctctagttgagttagattcgtctgtcctgactctaatgaacctcgagacccaactcatctaaaactgatatatata |
371 |
Q |
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| T |
31409750 |
ctataagtatctctagttgagttagattcgtctgtcccgactctggtgaacctcgagacccaactcatctaaaactgatatatata |
31409665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 31409979 - 31409906
Alignment:
| Q |
57 |
aaaaccataattcacaacaacaagattaaaaaagattagtacacttacacaaaaaacactatcatcatcctcac |
130 |
Q |
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| T |
31409979 |
aaaaccataattcacaacaacaagattaaaaaagattagtacacttacacaaaaaacactatcatcatcctcac |
31409906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 363 - 401
Target Start/End: Complemental strand, 31409659 - 31409621
Alignment:
| Q |
363 |
atatatatagatcttttcaaattctcgttagatctatct |
401 |
Q |
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| T |
31409659 |
atatatatagatcttttcaaattctcgttagatctatct |
31409621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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