View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16658_low_19 (Length: 411)
Name: NF16658_low_19
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 212 - 394
Target Start/End: Complemental strand, 34714284 - 34714101
Alignment:
| Q |
212 |
gagtggggtcctataaccgggcctgagtgcaaccttagggagttcgaggttcggtgataa-ccatttcggatgtacttcctatttggttatggctagaat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34714284 |
gagtggggtcctataaccgggcctgagtgcaaccttagggagttagaggttcggtgataaaccttttcggatgtacttcctatttggttattgctagaat |
34714185 |
T |
|
| Q |
311 |
ctcatctagagtgcgactttttcgtgaatgcccatatttcggtgtgtggttcattccgaacaagtacctctagagaccgaattc |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
34714184 |
ctcatctagagtgcgactttttcgtgaatgcccatatttcggaatgtggttcattccgaacgagtacctctagagaccaaattc |
34714101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 34714489 - 34714346
Alignment:
| Q |
13 |
catcataaccaaaatattaaagaattgggtaatgtgggtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
34714489 |
catcataaccaaaatattaaagaattgggtaatgtgggtcatctctcttctatatccaatattttacccattcatatgtgatgtgggacttaaccactca |
34714390 |
T |
|
| Q |
113 |
catttgatacccagcaatacatgtgtagttgttttacacattgg |
156 |
Q |
| |
|
||||| | ||||| | |||||||||||||||||||||||||||| |
|
|
| T |
34714389 |
cattttaaacccaactatacatgtgtagttgttttacacattgg |
34714346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 11615805 - 11615730
Alignment:
| Q |
50 |
gtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcacatttgataccca |
125 |
Q |
| |
|
||||||||| || |||| |||| |||||| || |||||| ||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
11615805 |
gtcatctcttttatatatccaacattttatctgttcataagtgatgtgagacttaaccactcacatttgaaaccca |
11615730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 11806493 - 11806433
Alignment:
| Q |
54 |
tctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcaca |
114 |
Q |
| |
|
|||||||| |||| |||||||||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
11806493 |
tctctcttatatatccaatattttacacattcatatacaatgtgggacttaatcactcaca |
11806433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 23270866 - 23270925
Alignment:
| Q |
58 |
tcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcacattt |
117 |
Q |
| |
|
|||| |||| |||||||||||| ||||||| | ||||||||||||||||||||||||| |
|
|
| T |
23270866 |
tcttgtatatccaatattttacacattcataaacaatgtgggacttaaccactcacattt |
23270925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 28979069 - 28978994
Alignment:
| Q |
50 |
gtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcacatttgataccca |
125 |
Q |
| |
|
|||| ||||||| |||| |||||||||||| ||||||| || |||| |||||||||||||||| |||| ||||| |
|
|
| T |
28979069 |
gtcacctctcttatatatccaatattttacacattcataaatagtgtgagacttaaccactcacacttgaaaccca |
28978994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 33730138 - 33730202
Alignment:
| Q |
47 |
tgggtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactc |
111 |
Q |
| |
|
||||||| ||||||| |||| |||| |||| ||| ||||||| |||||||||||||||||||| |
|
|
| T |
33730138 |
tgggtcacctctcttttatatccaacatttaacccattcatagtcgatgtgggacttaaccactc |
33730202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 11199992 - 11199928
Alignment:
| Q |
50 |
gtcatctctcttctataaccaatattttacctattcatatatgatgtgggacttaaccactcaca |
114 |
Q |
| |
|
|||| ||||||| |||| |||| |||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
11199992 |
gtcacctctcttatatatccaacattttacctattcataggcaatgtgagacttaaccactcaca |
11199928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University