View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16658_low_21 (Length: 398)
Name: NF16658_low_21
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 49 - 255
Target Start/End: Original strand, 21556430 - 21556637
Alignment:
| Q |
49 |
ttaatagaatttttaaacaatgtttttagggaactcgttagcaaaacgtatatttattgtagttactcattaatcagagacataaacacaattgatcgac |
148 |
Q |
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| T |
21556430 |
ttaatagaatttttaaacaatatttttagggaactcgttagtaaaacgtatagttattgtagttgctcattaatcagagacataaacacaattgatcgac |
21556529 |
T |
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| Q |
149 |
cctgtgatcgtatatcatag-gnnnnnnngtatcatttacttttaacctagattgatgtgacaaagcatatgcacataattcattttatttgaaacttat |
247 |
Q |
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| T |
21556530 |
cctatgatcgtatatcatagtttttttttatatcatttacttttaacccagattgatgtgacaaagcatatgcacataattcattttatttgaaacttat |
21556629 |
T |
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| Q |
248 |
ttttaact |
255 |
Q |
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| T |
21556630 |
ttttaact |
21556637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 308 - 383
Target Start/End: Original strand, 21556690 - 21556765
Alignment:
| Q |
308 |
cactcaattgtggtgtgcactatttgacaagactaggaagcactcataaaaatgtatgtgattaagaaaaattatt |
383 |
Q |
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| T |
21556690 |
cactcaattgtggggtgcactatttgacaagactaggaagcactcataaaaatgtatgtgattaagaaaaattatt |
21556765 |
T |
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