View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16658_low_22 (Length: 395)

Name: NF16658_low_22
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16658_low_22
NF16658_low_22
[»] chr7 (3 HSPs)
chr7 (110-378)||(10597531-10597779)
chr7 (155-270)||(4288556-4288671)
chr7 (1-39)||(10597851-10597888)
[»] chr5 (2 HSPs)
chr5 (167-267)||(113946-114046)
chr5 (167-229)||(23689244-23689306)
[»] chr1 (3 HSPs)
chr1 (167-279)||(18439574-18439686)
chr1 (167-279)||(18450432-18450544)
chr1 (135-267)||(18104143-18104275)
[»] chr8 (2 HSPs)
chr8 (141-239)||(24750424-24750523)
chr8 (209-267)||(23412987-23413045)
[»] chr4 (3 HSPs)
chr4 (115-234)||(56367953-56368071)
chr4 (118-267)||(10398625-10398774)
chr4 (210-267)||(8946408-8946465)
[»] scaffold0027 (1 HSPs)
scaffold0027 (210-279)||(8922-8991)
[»] chr2 (1 HSPs)
chr2 (201-235)||(31483284-31483318)
[»] scaffold0084 (1 HSPs)
scaffold0084 (209-237)||(30989-31017)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 110 - 378
Target Start/End: Complemental strand, 10597779 - 10597531
Alignment:
Q  110 gtcagatgagacagttatcttcatccttttcacattcaaacttaagaacaagacgagcattcaaacttttctgagaaaccattgcacaaatatgtcattg 209  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||      
T  10597779 gtcaaatgagacagttatcttcatccttttcacattcaaacttaagaacaagacgagcattcaaacttttatgagaaaccattgcacaaatatgtcata- 10597681  T
Q  210 gatttctagtttgatcatgcaagcaataaaactaaaactgacgcttgtttaccaaaaataacagtaaacatccatactatttagaaaagagcattgctca 309  Q
                       |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10597680 -------------------caagcaataaaactaaaactaacacttgtttaccaaaaacaacagtaaacatccatactatttagaaaagagcattgctca 10597600  T
Q  310 accttgtgcgccttaccgcacaagagtgcgccataatcaaatcctagccgtcagattcatctctaactg 378  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10597599 accttgtgcgccttaccgcacaagagcgcgccataatcaaatcctagccgtcagattcatctctaactg 10597531  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 270
Target Start/End: Original strand, 4288556 - 4288671
Alignment:
Q  155 gaacaagacgagcattcaaacttttctgagaaaccattgcacaaatatgtcattggattt-ctagtttgatcatgcaagcaataaaactaaaactgacgc 253  Q
    ||||| || ||||||| |||  |||||||||||  |||||||||||||||||| |||||| ||||||| ||| ||  || ||||||  ||||||| | |     
T  4288556 gaacatgatgagcatttaaatatttctgagaaat-attgcacaaatatgtcataggatttactagtttaatcctgtgagtaataaatttaaaactaatga 4288654  T
Q  254 ttgtttaccaaaaataa 270  Q
    |||||||||||||||||    
T  4288655 ttgtttaccaaaaataa 4288671  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 10597888 - 10597851
Alignment:
Q  1 tgtgatttgatacaagtttacatttattcaatcaaaata 39  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  10597888 tgtgatttgatacaagtt-acatttattcaatcaaaata 10597851  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 113946 - 114046
Alignment:
Q  167 cattcaaacttttctgagaaaccattgcacaaatatgtcattggatttctagtttgatcatgcaagcaataaaactaaaactgacgcttgtttaccaaaa 266  Q
    ||||||||||||| |||||||| |||||||||||||||| |  ||||| || |||||||||||||||||| || ||||||||   | |||||||||||||    
T  113946 cattcaaacttttttgagaaactattgcacaaatatgtcttatgatttttaatttgatcatgcaagcaattaatctaaaactagtgattgtttaccaaaa 114045  T
Q  267 a 267  Q
    |    
T  114046 a 114046  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 23689306 - 23689244
Alignment:
Q  167 cattcaaacttttctgagaaaccattgcacaaatatgtcattggatttctagtttgatcatgc 229  Q
    ||||||||||||||||| |||| ||||||||||||| |||| ||||||| ||||||| |||||    
T  23689306 cattcaaacttttctgataaactattgcacaaatatatcataggatttcaagtttgaacatgc 23689244  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 18439574 - 18439686
Alignment:
Q  167 cattcaaacttttctgagaaaccattgcacaaatatgtcattggatttctagtttgatcatgcaagcaataaaactaaaactgacgcttgtttaccaaaa 266  Q
    ||||||||||||| |||||||  |||||||||||| ||| |   ||||||||||||||| |||||||||| ||  ||||||| | | |||||||||||||    
T  18439574 cattcaaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcctgcaagcaattaatttaaaactaatgattgtttaccaaaa 18439673  T
Q  267 ataacagtaaaca 279  Q
     ||  ||||||||    
T  18439674 gtacaagtaaaca 18439686  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 167 - 279
Target Start/End: Original strand, 18450432 - 18450544
Alignment:
Q  167 cattcaaacttttctgagaaaccattgcacaaatatgtcattggatttctagtttgatcatgcaagcaataaaactaaaactgacgcttgtttaccaaaa 266  Q
    ||||||||||||| |||||||  |||||||||||| ||| |   ||||||||||||||| |||||||||| ||  ||||||| | | |||||||||||||    
T  18450432 cattcaaacttttatgagaaataattgcacaaatacgtcctaaaatttctagtttgatcctgcaagcaattaatttaaaactaatgattgtttaccaaaa 18450531  T
Q  267 ataacagtaaaca 279  Q
     ||  ||||||||    
T  18450532 gtacaagtaaaca 18450544  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 267
Target Start/End: Original strand, 18104143 - 18104275
Alignment:
Q  135 cttttcacattcaaacttaagaacaagacgagcattcaaacttttctgagaaaccattgcacaaatatgtcattggatttc-tagtttgatcatgcaagc 233  Q
    ||||| |||||||| | || ||||| || ||  ||||||||||||||||||||| ||||||||| |||||| |  |||||  |||||||||||||||||     
T  18104143 cttttaacattcaagcctatgaacatgatgaaaattcaaacttttctgagaaac-attgcacaattatgtcctacgatttaatagtttgatcatgcaagt 18104241  T
Q  234 aataaaactaaaactgacgcttgtttaccaaaaa 267  Q
    ||||||  |||||||   | ||||||||||||||    
T  18104242 aataaatttaaaactagtgattgtttaccaaaaa 18104275  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 24750424 - 24750523
Alignment:
Q  141 acattcaaacttaagaacaa-gacgagcattcaaacttttctgagaaaccattgcacaaatatgtcattggattt-ctagtttgatcatgcaagcaataa 238  Q
    ||||||||||||| |||||| || || |||||||| ||||||||||||  |||||||||||||||||| ||||||  |||||||||| || ||| |||||    
T  24750424 acattcaaacttatgaacaatgatgaacattcaaagttttctgagaaat-attgcacaaatatgtcataggatttagtagtttgatcttgaaagtaataa 24750522  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 267
Target Start/End: Original strand, 23412987 - 23413045
Alignment:
Q  209 ggatttctagtttgatcatgcaagcaataaaactaaaactgacgcttgtttaccaaaaa 267  Q
    ||||||||||||||||| |||||||||| || ||||||||  | ||||||||| |||||    
T  23412987 ggatttctagtttgatcctgcaagcaattaatctaaaactagcacttgtttacgaaaaa 23413045  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 56367953 - 56368071
Alignment:
Q  115 atgagacagttatcttcatccttttcacattcaaacttaagaacaagacgagcattcaaacttttctgagaaaccattgcacaaatatgtcattggattt 214  Q
    |||||| ||||||||||||| |||| ||||||||||||| |||||  |  |  |||||||| ||||||||||||  |||||  ||||||||||  |||||    
T  56367953 atgagatagttatcttcatcttttttacattcaaacttatgaacaccataaatattcaaacctttctgagaaacatttgca-taatatgtcataagattt 56368051  T
Q  215 ctagtttgatcatgcaagca 234  Q
    |||||||  |||| ||||||    
T  56368052 ctagtttattcatacaagca 56368071  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 267
Target Start/End: Complemental strand, 10398774 - 10398625
Alignment:
Q  118 agacagttatcttcatccttttcacattcaaacttaagaacaagacgagcattcaaac-ttttctgagaaaccattgcacaaatatgtcattggatttct 216  Q
    ||||| ||||||| ||| |||| ||||||||||| | |||||  | ||  |||||||| |||| ||| ||||  |||||||| |||||| | || |||||    
T  10398774 agacaattatcttgatcttttttacattcaaactcaggaacaccatgaatattcaaacattttttgaaaaacatttgcacaa-tatgtcctagggtttct 10398676  T
Q  217 agtttgatcatgcaagcaataaaactaaaactgacgcttgtttaccaaaaa 267  Q
    ||||||||| ||||||||||| | ||||||||    |||||||||||||||    
T  10398675 agtttgatcctgcaagcaatagatctaaaactagaacttgtttaccaaaaa 10398625  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 8946465 - 8946408
Alignment:
Q  210 gatttctagtttgatcatgcaagcaataaaactaaaactgacgcttgtttaccaaaaa 267  Q
    ||||| |||||||||| |||||||||||||  |||||||  |||||||||||||||||    
T  8946465 gatttttagtttgatcctgcaagcaataaacttaaaacttgcgcttgtttaccaaaaa 8946408  T

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Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 8922 - 8991
Alignment:
Q  210 gatttctagtttgatcatgcaagcaataaaactaaaactgacgcttgtttaccaaaaataacagtaaaca 279  Q
    ||||| |||||||||  | |||| ||| || ||||||||||||||||||||||||||| | |||||||||    
T  8922 gatttttagtttgattctacaagtaattaatctaaaactgacgcttgtttaccaaaaacatcagtaaaca 8991  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 31483318 - 31483284
Alignment:
Q  201 atgtcattggatttctagtttgatcatgcaagcaa 235  Q
    ||||||| |||||||||||||||||||||||||||    
T  31483318 atgtcataggatttctagtttgatcatgcaagcaa 31483284  T

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Target: scaffold0084 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 30989 - 31017
Alignment:
Q  209 ggatttctagtttgatcatgcaagcaata 237  Q
    |||||||||||||||||||||||||||||    
T  30989 ggatttctagtttgatcatgcaagcaata 31017  T

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