View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16658_low_23 (Length: 391)
Name: NF16658_low_23
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_low_23 |
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| [»] scaffold0187 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Original strand, 45759229 - 45759592
Alignment:
| Q |
19 |
gatagtagtaattaaaatttcataatcctgaaaaattctaatgctatgcttaagcttgaagttgatgatgagtttctgagtccgaaatgtgcttcttgta |
118 |
Q |
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| T |
45759229 |
gatagtagtaattaaaatttcataatcctgaaaaattctaatgctatgcttaagcttgaagttgatgatgagtttctgagtccgaaatgtgcttcttgta |
45759328 |
T |
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| Q |
119 |
tagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggccaaattttggaaactggcttt |
218 |
Q |
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| T |
45759329 |
tcgagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggccaaattttggaaactggcttt |
45759428 |
T |
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| Q |
219 |
ggcccttcttcataagctttgtaattatgcttgcttgatttgaaaatgttaaaaacagatagaaaagatgaagatttcctttgcctatttttgcctccca |
318 |
Q |
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| T |
45759429 |
ggcccttcttcataagctttgtaattatgcttgcttgatttgaaaatgttaaaaacagatagaaaagatgaagatttcctttgcctatttttgcctccca |
45759528 |
T |
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| Q |
319 |
ttatgtgaagaaagacactactagtgagtgagttacccttctttggcttattggttagaataat |
382 |
Q |
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| T |
45759529 |
ttatgtgaagaaagacactactagtgagtgagttacccttctttggcttattggttagaataat |
45759592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 27289 - 27377
Alignment:
| Q |
111 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
199 |
Q |
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| T |
27289 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggcca |
27377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 6633 - 6721
Alignment:
| Q |
111 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
199 |
Q |
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| T |
6633 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaacttcctctatcttcatcacttggcca |
6721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 16961 - 17049
Alignment:
| Q |
111 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
199 |
Q |
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| T |
16961 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaacttcctctatcttcatcacttggcca |
17049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 37855615 - 37855527
Alignment:
| Q |
111 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
199 |
Q |
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| T |
37855615 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggcca |
37855527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 37867803 - 37867715
Alignment:
| Q |
111 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
199 |
Q |
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| T |
37867803 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggcca |
37867715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 37881843 - 37881755
Alignment:
| Q |
111 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
199 |
Q |
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| T |
37881843 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggcca |
37881755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 37911788 - 37911700
Alignment:
| Q |
111 |
ttcttgtatagagcaataaaagctgtagctctcatgtcaataacaggatcagctaccccccatgtacctttgtcttcatcactaggcca |
199 |
Q |
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| T |
37911788 |
ttcttgtattgagcaatgaatgctgtagctctcatgtcaataacaggatcagctacaccccaactacctctgtcttcatcacttggcca |
37911700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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