View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16658_low_24 (Length: 390)
Name: NF16658_low_24
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 41001010 - 41001380
Alignment:
| Q |
15 |
tattatcatcatcctaaaatgacaatagttggcttatcgacctcccacctaaaaatcaaacatctttatttggttaattctaacatttatttggtcccca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41001010 |
tattatcatcatcctaaaatgacaatagttggcttatcgacctcccacctaaaaatcaaacatctttatttggttaagtctaacatttatttggtcccca |
41001109 |
T |
|
| Q |
115 |
tattcattctttaatacggaaagaagatatgattggtgtctatattttcaaattggggtataacctttccatgaagatagttaccgatgcatgcaaattt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41001110 |
tattcattctttaatacggaaagaagatatgattggtgtctatattttcaaattggggtataacctttccatgaagatagttaccgatgcatgcaaattt |
41001209 |
T |
|
| Q |
215 |
tatgttcctggagtagtggggcgcgcattcaagctcccacctaaggtccaaaatgtgatttggatgatatgcaggtgttctttgccaatgcgtcagcggt |
314 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41001210 |
tatgtacctggagtagtggggcgcgcattcaagctcccacctaaggtccaaaatgtgatttggatgatatgcagggattctttgccaatgcgtcagcggt |
41001309 |
T |
|
| Q |
315 |
taaacaatcctcgcgtcccatatccgaaaaattgttcgttgtccatggatgcagttgatgatgatgtccat |
385 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| |||| |
|
|
| T |
41001310 |
taaacgatcctcgcgtcccatatccgaaaaattgtttgttgtccatggatgcagttgaggacgatgcccat |
41001380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University