View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16658_low_27 (Length: 362)
Name: NF16658_low_27
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 17 - 349
Target Start/End: Complemental strand, 48107620 - 48107292
Alignment:
| Q |
17 |
agaaaggattgatatacactttttcaggtaactaacttatgtttctctctcagtcactaacattcatcaaatgaatgtaaattatcatattgatcgttaa |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48107620 |
agaaaggattgatatatactttttcaggtaactaacttatgtttctc----agtcactaacattcatcaaatgaatgtaaattatcatattgatcgttaa |
48107525 |
T |
|
| Q |
117 |
ttcatttgttttataaaacatattttgattgattttatttccacattcagcttggcttcagctgagtgaaggaagtgacacaatttctgtggtatttaaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48107524 |
ttcatttgttttataaaacatattttgattgattttatttccacattcagcttggcttcagctgagtgaaggaagtgacacaatttctgtggtatttaaa |
48107425 |
T |
|
| Q |
217 |
acaaatggaagtgatcaactggtgcatggtggccatgtgatagcaaagcatggatgttggtctcttctaaaaggtggcatagtcgcaaacttctcgagcc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
48107424 |
acaaatggaagtgatcaactggtgcatggtggccatgtgatagcaaagcatggatgttggtctcttctaaaaggtggcatagttgcaaacttctcgagcc |
48107325 |
T |
|
| Q |
317 |
ctgctgagattcttttcgaggttaactgcattc |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
48107324 |
ctgctgagattcttttcgaggttaactgcattc |
48107292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 161 - 341
Target Start/End: Complemental strand, 48068498 - 48068321
Alignment:
| Q |
161 |
attcagcttggcttcagctgagtgaaggaagtgacacaatttctgtggtatttaaaacaaatggaagtgatcaactggtgcatggtggccatgtgatagc |
260 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| | ||||||||||||||||| |
|
|
| T |
48068498 |
attcagcttggttccagctgagtgaaggaagtgacacaatttctgtggtatttaaaataaatggaagtga---attggtaaaaggtggccatgtgatagc |
48068402 |
T |
|
| Q |
261 |
aaagcatggatgttggtctcttctaaaaggtggcatagtcgcaaacttctcgagccctgctgagattcttttcgaggttaa |
341 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||| ||||| || || ||||||||||| || ||||| |||||||| |
|
|
| T |
48068401 |
aaaatatggatgttggtctcttctaaaaggaggcatagttgcaaaattttcaagccctgctgaaatcctttttgaggttaa |
48068321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 161 - 338
Target Start/End: Complemental strand, 48063834 - 48063660
Alignment:
| Q |
161 |
attcagcttggcttcagctgagtgaaggaagtgacacaatttctgtggtatttaaaacaaatggaagtgatcaactggtgcatggtggccatgtgatagc |
260 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||| | || || |||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48063834 |
attcagcttggtttcagctcagtgaaggaagtgacattgtgtcagttgtatttaaaagaaatggaagtga---actggtgcatggtggccatgtgatagc |
48063738 |
T |
|
| Q |
261 |
aaagcatggatgttggtctcttctaaaaggtggcatagtcgcaaacttctcgagccctgctgagattcttttcgaggt |
338 |
Q |
| |
|
|| |||||||||||||| || |||||||| || ||||| |||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
48063737 |
caaacatggatgttggtcgctgctaaaaggcggtatagttgcaaacttttcaagccctgctgagattctttttgaggt |
48063660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 154 - 338
Target Start/End: Complemental strand, 48101084 - 48100903
Alignment:
| Q |
154 |
tttccacattcagcttggcttcagctgagtgaaggaagtgacacaatttctgtggtatttaaaacaaatggaagtgatcaactggtgcatggtggccatg |
253 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||| | || || |||||||||| |||||||||||| | | || | ||||| |||| |
|
|
| T |
48101084 |
tttccacattcagcttggtttcagttgagtgaaggaagtgagtttgtatcagttgtatttaaaataaatggaagtga---atttgtacgaggtggtcatg |
48100988 |
T |
|
| Q |
254 |
tgatagcaaagcatggatgttggtctcttctaaaaggtggcatagtcgcaaacttctcgagccctgctgagattcttttcgaggt |
338 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |
|
|
| T |
48100987 |
tgatagcaaagcatggatgctggtctcttctaaaaggtggcatagttgccaacttttcaagccctgctgagattctttttgaggt |
48100903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University