View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16658_low_3 (Length: 648)

Name: NF16658_low_3
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16658_low_3
NF16658_low_3
[»] chr3 (16 HSPs)
chr3 (11-384)||(34525074-34525452)
chr3 (338-632)||(34524809-34525092)
chr3 (11-358)||(27631766-27632118)
chr3 (11-358)||(34515800-34516160)
chr3 (86-348)||(27615809-27616058)
chr3 (81-197)||(34524736-34524848)
chr3 (369-441)||(27631711-27631783)
chr3 (444-521)||(34515704-34515781)
chr3 (287-348)||(34504896-34504958)
chr3 (390-441)||(34515031-34515082)
chr3 (579-632)||(27632009-27632060)
chr3 (369-423)||(34515763-34515817)
chr3 (579-632)||(34516043-34516094)
chr3 (565-632)||(34525335-34525400)
chr3 (257-298)||(34524579-34524620)
chr3 (311-348)||(34486519-34486556)
[»] chr4 (1 HSPs)
chr4 (393-440)||(1070080-1070127)


Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 384
Target Start/End: Complemental strand, 34525452 - 34525074
Alignment:
Q  11 agagagaagaaacagagctattttttctcaggaattgcttatgtcaactttgttcttagaatag--------atagacgcatttgcgaggaactgcttta 102  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  34525452 agagagaagaaagagagctactttttctcaggaattgcttatgtcaactttgttcttagaatagtagaatagatagacgcatttgcgaggaactgcttta 34525353  T
Q  103 ttaattatatcttcagatacttttgatgatgcttgtaaaatgaggcattgtgtttttctttttccgttgcaataccaacagaaaaatattcacttttgag 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34525352 ttaattatatcttcagatacttttgatgatgcttgtaaaatgaggcattgtgtttttctttttctgttgcaataccaacagaaaaatattcacttttgag 34525253  T
Q  203 gtactaaatgacnnnnnnnncatgagtgagatactgaaattagcttctcagataattttatgcaggactaaaacgagatatttcctatttgttcattctt 302  Q
    ||||||||||||        |||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  34525252 gtactaaatgactttttcttcatgagtgagatactgaaattagcttctcagat---tttatgcaggactaaaacgagatatttcctatttgttcattctt 34525156  T
Q  303 gctagttattttttcaaaattatatcttaattttgattaagggagtaatataaacttttccctattaagggagtcatataaa 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34525155 gctagttattttttcaaaattatatcttaattttgattaagggagtaatataaacttttccctattaagggagtcatataaa 34525074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 338 - 632
Target Start/End: Complemental strand, 34525092 - 34524809
Alignment:
Q  338 attaagggagtaatataaacttttccctattaagggagtcatataaattattagctgatttgattctacacaatttttcatcaaatactttgttctacca 437  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34525092 attaagggagtcatataaacttttccctattaagggagtcatataaactattagctgatttgattctacacaatttttcatcaaatactttgttctacca 34524993  T
Q  438 taaaatactcaatttttcatcaaattctttaaaagcactttttaaaggttacagcagagtaaatttttgacttgtaggaaagtcacttgaaaagctcttt 537  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||           ||||    
T  34524992 taaaatactcaatttttcatcaaattctttaaaagcactttttaaaggttacagcagagtaaatttttcacttgtaggaaagtca-----------cttt 34524904  T
Q  538 aaaagcacttttcatcaaatttttgacttcttagaataactgaatagataggcatgcatttgcgaggaactgcgttattaattatatcttcagat 632  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34524903 aaaagcacttttcatcaaatttttgacttcttagaataactgaatagataggcatgcatttgcgaggaactgcgttattaattatatcttcagat 34524809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 27632118 - 27631766
Alignment:
Q  11 agagagaagaaacagagctattttttctcaggaattgcttatgtcaactttgttcttagaatagatagacgcatttgcgaggaactgctttattaattat 110  Q
    ||||||||| ||||| |||  |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  27632118 agagagaagtaacagggctgatttttctcaggaattgcttatgtcaactttgtccttagaatagataggcgcatttgcgaggaactgctttattaattat 27632019  T
Q  111 atcttcagatacttttgat---------gatgcttgtaaaatgaggcattgtgtttttctttttccgttgcaataccaacagaaaaatattcacttttga 201  Q
    ||||||||||| |||||||         ||||||||||||| |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||    
T  27632018 atcttcagatagttttgatagttttgacgatgcttgtaaaaagaggcattgtgtttttctttct--gttgcaataccaacagaaaaatattcacttttga 27631921  T
Q  202 ggtactaaatgacnnnnnnnncatgagtgagatactgaaattagcttctcagataattttatgcaggactaaaacgagatatttcctatttgttcattct 301  Q
    | |||||||||||         ||| ||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||    
T  27631920 gttactaaatgactttttctttatgtgtgagatactgaaatcagcttctcagat---tttatgcaggactaaaacgagatatttcctatttgttcattct 27631824  T
Q  302 tgctag-ttattttttcaaaattatatcttaattttgattaagggagtaatataaact 358  Q
    |||||| ||||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  27631823 tgctagtttattttttcaaaattatatcttaactttgatcaagggagtcatataaact 27631766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 34516160 - 34515800
Alignment:
Q  11 agagagaagaaacagagctattttttctcaggaattgcttatgtcaactttgttcttagaatag--------atagacgcatttgcgaggaactgcttta 102  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||        |||| |||||||||||||||||||||||    
T  34516160 agagagaagaaacagagctactttttctcaggaattgcttatgtcaactttgtccttagaatagtagaatagataggcgcatttgcgaggaactgcttta 34516061  T
Q  103 ttaattatatcttcagatacttttgat---------gatgcttgtaaaatgaggcattgtgtttttctttttccgttgcaataccaacagaaaaatattc 193  Q
    ||||||||||||||||||| |||||||         ||||||||||||| ||||||||| |||||||||| |  |||||||||||||||||||||||||     
T  34516060 ttaattatatcttcagatagttttgatagttttgacgatgcttgtaaaaagaggcattgcgtttttctttct--gttgcaataccaacagaaaaatatta 34515963  T
Q  194 acttttgaggtactaaatgacnnnnnnnncatgagtgagatactgaaattagcttctcagataattttatgcaggactaaaacgagatatttcctatttg 293  Q
    ||||||||| |||||||||||         ||| ||||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||    
T  34515962 acttttgagttactaaatgactttttctttatgtgtgagatactgaaattagcttctcagat---tttatgcaggactgaaacgagatatttcctatttg 34515866  T
Q  294 ttcattcttgctag-ttattttttcaaaattatatcttaattttgattaagggagtaatataaact 358  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| |||||||||    
T  34515865 ttcattcttgctagtttattttttcaaaattatatcttaactttgatcaagggagtcatataaact 34515800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 86 - 348
Target Start/End: Complemental strand, 27616058 - 27615809
Alignment:
Q  86 tgcgaggaactgctttattaattatatcttcagatacttttgatgatgcttgtaaaatgaggcattgtgtttttctttt--------tccgttgcaatac 177  Q
    |||||| ||||||||||||||||||||||| ||||| || ||| ||||||||||||| ||||||||| |||||| ||||        || ||||||||||    
T  27616058 tgcgagaaactgctttattaattatatctttagatagttgtgacgatgcttgtaaaaagaggcattgcgttttttttttcttttctttctgttgcaatac 27615959  T
Q  178 caacagaaaaatattcacttttgaggtactaaatgacnnnnnnnncatgagtgagatactgaaattagcttctcagataattttatgcaggactaaaacg 277  Q
    ||||||||||||||| |||||     | ||               |||| ||||||||| ||||||||||||||||||   |||||| |||||||||| |    
T  27615958 caacagaaaaatatttacttt-----ttct--------------tcatgtgtgagatacagaaattagcttctcagat---tttatgaaggactaaaatg 27615881  T
Q  278 agatatttcctatttgttcattcttgctag-ttattttttcaaaattatatcttaattttgattaagggagt 348  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  27615880 agatatttcctatttgttcattcttgctagtttattttttcaaaattatatcttaactttgattaagggagt 27615809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 34524848 - 34524736
Alignment:
Q  81 gcatttgcgaggaactgctttattaattatatcttcagatacttttgatgatgcttgtaaaatgaggcattgtgtttttctttttccgttgcaataccaa 180  Q
    |||||||||||||||||| ||||||||||||||||||||||  ||||||||||| ||||||| ||||||||| |||    |||||| |||||||||||||    
T  34524848 gcatttgcgaggaactgcgttattaattatatcttcagataactttgatgatgcatgtaaaaagaggcattgcgtt----tttttctgttgcaataccaa 34524753  T
Q  181 cagaaaaatattcactt 197  Q
    |||||||||||||||||    
T  34524752 cagaaaaatattcactt 34524736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 369 - 441
Target Start/End: Complemental strand, 27631783 - 27631711
Alignment:
Q  369 aagggagtcatataaattattagctgatttgattctacacaatttttcatcaaatactttgttctaccataaa 441  Q
    |||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  27631783 aagggagtcatataaactattagctgatttgattccactcaatttttcatcaaatactttgttctaccataaa 27631711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 444 - 521
Target Start/End: Complemental strand, 34515781 - 34515704
Alignment:
Q  444 actcaatttttcatcaaattctttaaaagcactttttaaaggttacagcagagtaaatttttgacttgtaggaaagtc 521  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||||| ||||| |||||||| |||| ||||||||||    
T  34515781 actcaatttttcaacaaattctataaaatcactttttaaaggttacaacagagcaaattttttacttctaggaaagtc 34515704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 34504958 - 34504896
Alignment:
Q  287 ctatttgttcattcttgctagtt-attttttcaaaattatatcttaattttgattaagggagt 348  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||    
T  34504958 ctatttgttcattctcgctagtttattttttcaaaattatatcttaactttgattaagggagt 34504896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 34515082 - 34515031
Alignment:
Q  390 agctgatttgattctacacaatttttcatcaaatactttgttctaccataaa 441  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  34515082 agctgatttgattccactcaatttttcatcaaatactttgttctaccataaa 34515031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 579 - 632
Target Start/End: Complemental strand, 27632060 - 27632009
Alignment:
Q  579 gaatagataggcatgcatttgcgaggaactgcgttattaattatatcttcagat 632  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  27632060 gaatagataggc--gcatttgcgaggaactgctttattaattatatcttcagat 27632009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 369 - 423
Target Start/End: Complemental strand, 34515817 - 34515763
Alignment:
Q  369 aagggagtcatataaattattagctgatttgattctacacaatttttcatcaaat 423  Q
    |||||||||||||||| |||||||||||||||||| || |||||||||| |||||    
T  34515817 aagggagtcatataaactattagctgatttgattccactcaatttttcaacaaat 34515763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 579 - 632
Target Start/End: Complemental strand, 34516094 - 34516043
Alignment:
Q  579 gaatagataggcatgcatttgcgaggaactgcgttattaattatatcttcagat 632  Q
    ||||||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  34516094 gaatagataggc--gcatttgcgaggaactgctttattaattatatcttcagat 34516043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 632
Target Start/End: Complemental strand, 34525400 - 34525335
Alignment:
Q  565 ttcttagaataactgaatagataggcatgcatttgcgaggaactgcgttattaattatatcttcagat 632  Q
    |||||||||||   |||||||||| |  |||||||||||||||||| |||||||||||||||||||||    
T  34525400 ttcttagaatagtagaatagatagac--gcatttgcgaggaactgctttattaattatatcttcagat 34525335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 34524620 - 34524579
Alignment:
Q  257 attttatgcaggactaaaacgagatatttcctatttgttcat 298  Q
    |||||||| |||||||||| ||||||||||||||||||||||    
T  34524620 attttatgtaggactaaaaggagatatttcctatttgttcat 34524579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 34486556 - 34486519
Alignment:
Q  311 ttttttcaaaattatatcttaattttgattaagggagt 348  Q
    ||||| |||||||||||||||| |||||||||||||||    
T  34486556 tttttccaaaattatatcttaactttgattaagggagt 34486519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 393 - 440
Target Start/End: Original strand, 1070080 - 1070127
Alignment:
Q  393 tgatttgattctacacaatttttcatcaaatactttgttctaccataa 440  Q
    ||||||||||| |||||||||||||||||| ||| |||||||||||||    
T  1070080 tgatttgattccacacaatttttcatcaaaaactatgttctaccataa 1070127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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