View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16658_low_33 (Length: 316)
Name: NF16658_low_33
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 81 - 292
Target Start/End: Complemental strand, 5161153 - 5160942
Alignment:
| Q |
81 |
tgtcctattccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgttaaccgacaca |
180 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
5161153 |
tgtcctataccaaatgtcaaattttggaagcaagatggtattgaagcattgaacatgttccgcgataggtccatcatgttgatcttttttaatcgacaca |
5161054 |
T |
|
| Q |
181 |
attgaattggaatatctccttccaaattgttccctccaagtaaaagagcacgtaactctaaaagattgtccatccatttgggaattttacctgaaaattt |
280 |
Q |
| |
|
||||||||||||||||||||||||| || |||| ||| ||||||||| |||| |||||| | ||||| || ||||| ||||||||||||||||||||||| |
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|
| T |
5161053 |
attgaattggaatatctccttccaagttattccatcctagtaaaagaacacgcaactctgagagattatcaatccaattgggaattttacctgaaaattt |
5160954 |
T |
|
| Q |
281 |
gttctccctcaa |
292 |
Q |
| |
|
|||||||||||| |
|
|
| T |
5160953 |
gttctccctcaa |
5160942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 87 - 292
Target Start/End: Original strand, 4855963 - 4856168
Alignment:
| Q |
87 |
attccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgttaaccgacacaattgaa |
186 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| | ||||||||||| |||| ||||||| |||||||||||||||||| |
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|
| T |
4855963 |
attccaaatgacatatttcggaagcaagatggtattgaagcattgagcatgttccgtgataggtccattatgtcgatcttttttaaccgacacaattgaa |
4856062 |
T |
|
| Q |
187 |
ttggaatatctccttccaaattgttccctccaagtaaaagagcacgtaactctaaaagattgtccatccatttgggaattttacctgaaaatttgttctc |
286 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | || || |||||||| | ||||||||||||||||||||||||||| |
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|
| T |
4856063 |
ttggaatatctccttccaagttgttccctcctagtaaaagaacacgtaactctgataggttatccatccagtggggaattttacctgaaaatttgttctc |
4856162 |
T |
|
| Q |
287 |
cctcaa |
292 |
Q |
| |
|
|||||| |
|
|
| T |
4856163 |
cctcaa |
4856168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 87 - 292
Target Start/End: Complemental strand, 5214951 - 5214746
Alignment:
| Q |
87 |
attccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgttaaccgacacaattgaa |
186 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| | ||||||||||| |||| |||||| |||||||||||||||||| |
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|
| T |
5214951 |
attccaaatgacatatttcggaagcaagatggtattgaagcattgagcatgttccgtgataggtccattatgtctatcttttttaaccgacacaattgaa |
5214852 |
T |
|
| Q |
187 |
ttggaatatctccttccaaattgttccctccaagtaaaagagcacgtaactctaaaagattgtccatccatttgggaattttacctgaaaatttgttctc |
286 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||||||| ||||||||||| | || || |||||||| | ||||||||||||||||||||||||||| |
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|
| T |
5214851 |
ttggaatatctccttccaatttgttccctcctagtaaaagaacacgtaactctgatagcttatccatccagtggggaattttacctgaaaatttgttctc |
5214752 |
T |
|
| Q |
287 |
cctcaa |
292 |
Q |
| |
|
|||||| |
|
|
| T |
5214751 |
cctcaa |
5214746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 87 - 292
Target Start/End: Complemental strand, 7143293 - 7143088
Alignment:
| Q |
87 |
attccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgttaaccgacacaattgaa |
186 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||| |||||||||| | |||||||| || ||| ||||||| |||||||||||||||||| |
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|
| T |
7143293 |
attccaaatgacatattttggaagcaaggtggtattgaagcattgagcatgttttctgataggtctattttgtcgatcttttttaaccgacacaattgaa |
7143194 |
T |
|
| Q |
187 |
ttggaatatctccttccaaattgttccctccaagtaaaagagcacgtaactctaaaagattgtccatccatttgggaattttacctgaaaatttgttctc |
286 |
Q |
| |
|
||||||||||||||||||||||||||| ||| | ||||||| ||||||||||| | || || |||||||| ||||||||||||| ||||| ||||||||| |
|
|
| T |
7143193 |
ttggaatatctccttccaaattgttccttcctaataaaagaacacgtaactctgatagcttatccatccagttgggaattttacttgaaagtttgttctc |
7143094 |
T |
|
| Q |
287 |
cctcaa |
292 |
Q |
| |
|
|||||| |
|
|
| T |
7143093 |
cctcaa |
7143088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 87 - 292
Target Start/End: Original strand, 4841466 - 4841671
Alignment:
| Q |
87 |
attccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgttaaccgacacaattgaa |
186 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||| | |||| |||||| ||| |||| ||| ||| |||||||||||| |
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|
| T |
4841466 |
attccaaatgacatattttggaagcaagatggtattgaagcattgagcatgttccgtgataagtccattatggtgatattttttagatgacacaattgaa |
4841565 |
T |
|
| Q |
187 |
ttggaatatctccttccaaattgttccctccaagtaaaagagcacgtaactctaaaagattgtccatccatttgggaattttacctgaaaatttgttctc |
286 |
Q |
| |
|
||||||| |||||||| |||||||||||||| | || |||| | | ||||||| | || || |||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
4841566 |
ttggaatttctccttcaaaattgttccctcctaatagaagaacccttaactctgagagcttatccatccaattgggaattttacctgaaagtttgttctc |
4841665 |
T |
|
| Q |
287 |
cctcaa |
292 |
Q |
| |
|
|||||| |
|
|
| T |
4841666 |
cctcaa |
4841671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 87 - 292
Target Start/End: Complemental strand, 5174053 - 5173848
Alignment:
| Q |
87 |
attccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgttaaccgacacaattgaa |
186 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| | ||||| ||||| |||| ||||||| | |||| ||| ||||||| |
|
|
| T |
5174053 |
attccaaatgacatattttggaggcaagatggtattgaagcattgagcatgttccgtgatagatccattatgtcgatctttttgaaccaacaaaattgaa |
5173954 |
T |
|
| Q |
187 |
ttggaatatctccttccaaattgttccctccaagtaaaagagcacgtaactctaaaagattgtccatccatttgggaattttacctgaaaatttgttctc |
286 |
Q |
| |
|
||||||| |||||||| |||||||||||||| | ||||||| | | |||||| | || || |||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
5173953 |
ttggaatttctccttcaaaattgttccctcctaataaaagaaccctcaactctgagagcttatccatccagttgggaattttacctgaaagtttgttctc |
5173854 |
T |
|
| Q |
287 |
cctcaa |
292 |
Q |
| |
|
|||||| |
|
|
| T |
5173853 |
cctcaa |
5173848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 87 - 289
Target Start/End: Complemental strand, 5183389 - 5183186
Alignment:
| Q |
87 |
attccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgtta-accgacacaattga |
185 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| | |||| |||||| |||||||||||| ||| | ||||||||||| |
|
|
| T |
5183389 |
attccaaatgacatattttgaaagcaagatggtattgaagcattgagcatgttccgtgataagtccattatgttgatcttttttagaaggacacaattga |
5183290 |
T |
|
| Q |
186 |
attggaatatctccttccaaattgttccctccaagtaaaagagcacgtaactctaaaagattgtccatccatttgggaattttacctgaaaatttgttct |
285 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | || ||| | | ||||||| | || || |||||||| |||||||||||||||||||||||||| | |
|
|
| T |
5183289 |
attggaatatctccttcaaaattgttccctcctaatagaaggacccttaactctgagagcttatccatccaattgggaattttacctgaaaatttgttgt |
5183190 |
T |
|
| Q |
286 |
ccct |
289 |
Q |
| |
|
|||| |
|
|
| T |
5183189 |
ccct |
5183186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 87 - 292
Target Start/End: Complemental strand, 5196794 - 5196589
Alignment:
| Q |
87 |
attccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgttaaccgacacaattgaa |
186 |
Q |
| |
|
||||||||| ||| |||| | |||||||||||||| |||||| |||||||||| | |||| |||||| |||||||||||| ||||||||||||| || | |
|
|
| T |
5196794 |
attccaaataacatatttcgaaagcaagatggtatggaagcattgagcatgtttcgtgataagtccattatgttgatcttttttaaccgacacaactgca |
5196695 |
T |
|
| Q |
187 |
ttggaatatctccttccaaattgttccctccaagtaaaagagcacgtaactctaaaagattgtccatccatttgggaattttacctgaaaatttgttctc |
286 |
Q |
| |
|
||||||| |||||||| |||||||||||||| | |||||| | | ||| ||| | | || |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
5196694 |
ttggaatttctccttcaaaattgttccctcctaataaaaggacccttaattctgagaacttatccatccagttgggaatttttcctgaaaatttgttctc |
5196595 |
T |
|
| Q |
287 |
cctcaa |
292 |
Q |
| |
|
|||||| |
|
|
| T |
5196594 |
cctcaa |
5196589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 5203535 - 5203489
Alignment:
| Q |
241 |
aaagattgtccatccatttgggaattttacctgaaaatttgttctcc |
287 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
5203535 |
aaagattatccatccagttgggaatgttacctgaaaatttgttctcc |
5203489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 5203597 - 5203556
Alignment:
| Q |
122 |
tgaagcactgagcatgttctgcgataggtccatcatgttgat |
163 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||||||||| |
|
|
| T |
5203597 |
tgaagcattgagcatgttccgtgataggtccatcatgttgat |
5203556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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