View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16658_low_35 (Length: 303)
Name: NF16658_low_35
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 5396001 - 5395738
Alignment:
| Q |
17 |
aatattaatataataaaaacgagaatgtcatggccttatggcactcactgtctcaagcaatacagattttaatagcatgtcacctataatacacaaacat |
116 |
Q |
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| T |
5396001 |
aatattaatataataaaaacgagaatgtcatggccttatggcactcactgtctcaagcaatacagcttttaatagcatgtcacctatactacacaaacat |
5395902 |
T |
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| Q |
117 |
catgattcaacatcacattatctttgaaaag-nnnnnnnnntgaactggtggttagctaaagcatctggcactgtcaaagcaagttatttaaccattgct |
215 |
Q |
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| T |
5395901 |
catgattcaacatcacattatctttgaaaagaaaaaaaaaatgaactggtggttagctaaagcatctggcactggcaaagcaagttatttaagcattgtt |
5395802 |
T |
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| Q |
216 |
ctatgtttttcaatatcctctcccttttaatttttattttcaactaatgaggttttactcactc |
279 |
Q |
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| T |
5395801 |
ctatgtttttcaatatcctctcccttttaatttttattttcaactaatgagattttactcactc |
5395738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 201
Target Start/End: Complemental strand, 5392037 - 5391993
Alignment:
| Q |
157 |
tgaactggtggttagctaaagcatctggcactgtcaaagcaagtt |
201 |
Q |
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| T |
5392037 |
tgaactggtggttagctaaagcaactggcactggcaaagcaagtt |
5391993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 5391993 - 5391928
Alignment:
| Q |
215 |
tctatgtttttcaatatcctctccctttta-atttttattttcaactaatgaggttttactcactc |
279 |
Q |
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|||||| |||||| | |||| |||||||| |||||| ||||||||||||||| |||||||||||| |
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| T |
5391993 |
tctatgcttttcattttccttgcccttttatatttttcttttcaactaatgagattttactcactc |
5391928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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