View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16658_low_4 (Length: 640)

Name: NF16658_low_4
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16658_low_4
NF16658_low_4
[»] chr6 (20 HSPs)
chr6 (306-595)||(31565162-31565451)
chr6 (21-241)||(33414524-33414744)
chr6 (21-174)||(31564964-31565117)
chr6 (306-472)||(33414293-33414459)
chr6 (90-241)||(33269497-33269648)
chr6 (306-462)||(33383760-33383916)
chr6 (70-241)||(33383981-33384156)
chr6 (331-462)||(33351400-33351530)
chr6 (21-241)||(33395008-33395230)
chr6 (306-416)||(33292802-33292912)
chr6 (21-204)||(33258187-33258372)
chr6 (345-448)||(33258067-33258170)
chr6 (140-230)||(33292988-33293078)
chr6 (310-382)||(33269355-33269427)
chr6 (51-147)||(33278972-33279068)
chr6 (488-617)||(33414117-33414254)
chr6 (476-614)||(33351212-33351363)
chr6 (21-144)||(33280358-33280481)
chr6 (332-372)||(31567428-31567468)
chr6 (21-81)||(33293090-33293150)
[»] chr2 (4 HSPs)
chr2 (306-472)||(17445747-17445910)
chr2 (21-198)||(17447805-17447982)
chr2 (490-566)||(17445951-17446026)
chr2 (169-241)||(17445607-17445679)
[»] scaffold0428 (4 HSPs)
scaffold0428 (21-204)||(2308-2493)
scaffold0428 (345-448)||(2188-2291)
scaffold0428 (51-147)||(15185-15281)
scaffold0428 (21-144)||(13772-13895)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 306 - 595
Target Start/End: Original strand, 31565162 - 31565451
Alignment:
Q  306 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565162 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 31565261  T
Q  406 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaacaattatagcttaaaaagttttcaagaaaagtatt 505  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565262 aagtatagctgccattggcgagaacattaatgtgcggcgttttgttcggttcactcttggagaaacaattatagcttaaaaagttttcaagaaaagtatt 31565361  T
Q  506 tgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaatcataataaccaaatgttgattagacgccaa 595  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565362 tgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaatcataataaccaaatgttgattagacgccaa 31565451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 33414744 - 33414524
Alignment:
Q  21 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgga 120  Q
    |||| |||||||||||||||| ||  |||||||||||||||| |||||||||||||||| |||  ||| ||||||||||||||||||| |||||||||||    
T  33414744 ctgataagaaatccggaagactagcagctgaaggaagaatcggtacatacattcacgatgcacgtattggtgttctaattgaagtgaactgtgaaacgga 33414645  T
Q  121 ctttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatatt 220  Q
    |||| | || ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33414644 ctttgttggcagaagtgagaaattcaaggagttggttgatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatatt 33414545  T
Q  221 cctaaaaccactgtgacgaag 241  Q
    ||  |||| | ||||||||||    
T  33414544 cccgaaactattgtgacgaag 33414524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 21 - 174
Target Start/End: Original strand, 31564964 - 31565117
Alignment:
Q  21 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgga 120  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31564964 ctgacaagaaatccggaagacgagttgctgaaggaagaatcggtacatacattcacgattcacgcattagtgttctaattgaagtgaaatgtgaaacgga 31565063  T
Q  121 ctttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgca 174  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31565064 ctttatcggtagaagtgagaaattcaaggagttggttcatgatcttgcaatgca 31565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 306 - 472
Target Start/End: Complemental strand, 33414459 - 33414293
Alignment:
Q  306 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 405  Q
    |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||    
T  33414459 ttgtcgagggaagaatctcaaagaggttaggagagcttgctcttctagagcagccttttattaaggatgacagtgttgtagtgaaagacttggtgaggca 33414360  T
Q  406 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaaca 472  Q
    |||||||||||| ||||| ||||||||||  |||||||||||||||||||||||||| |||||||||    
T  33414359 aagtatagctgctattggagagaacattaaagtgcggcgttttgttcggttcactctcggagaaaca 33414293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 90 - 241
Target Start/End: Complemental strand, 33269648 - 33269497
Alignment:
Q  90 gtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtcc 189  Q
    ||||||||||||||||||| |||||||| |||||| | || |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||    
T  33269648 gtgttctaattgaagtgaactgtgaaaccgactttgttggcagaagtgagaaattcaagaagttggttgatgatcttgcaatgcaagttgctgcttgtcc 33269549  T
Q  190 acaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 241  Q
    |||||||||||||||||||||||||||||||||  |||| | ||||||||||    
T  33269548 acaggttcagtttgtatctattgaagatattcccgaaactattgtgacgaag 33269497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 306 - 462
Target Start/End: Complemental strand, 33383916 - 33383760
Alignment:
Q  306 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 405  Q
    ||||||||||||||||||||||||| |||  ||| || |||||| || |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  33383916 ttgttgagggaagaatctcaaagaggttaccagatctcgctcttataaagcagcctttcattaaggatgacagtgtttcagtgaaagacttggtgaggca 33383817  T
Q  406 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactct 462  Q
    |||||||||||||||||||||||||||||  |   ||||||||||||||||||||||    
T  33383816 aagtatagctgccattggcgagaacattaaagctgggcgttttgttcggttcactct 33383760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 70 - 241
Target Start/End: Complemental strand, 33384156 - 33383981
Alignment:
Q  70 cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgca 169  Q
    ||||||| ||||||||||  ||||||||||||||||||| ||| |||| |||||| |||| |||||||||||| | |||||||| ||| |||||||||||    
T  33384156 cattcactattcacacatcggtgttctaattgaagtgaactgtcaaaccgactttgtcggcagaagtgagaaaattaaggagttggttgatgatcttgca 33384057  T
Q  170 atgcaagttgc----tgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 241  Q
    |||||||| ||    |||||||||| ||||||||||||||||| |||||||||||| | |||||| ||||||||||    
T  33384056 atgcaagtggctgcttgcttgtccagaggttcagtttgtatctgttgaagatattcttgaaaccattgtgacgaag 33383981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 331 - 462
Target Start/End: Complemental strand, 33351530 - 33351400
Alignment:
Q  331 attaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaac 430  Q
    ||||||||||||||||||||||| ||| ||||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||||  ||||| ||||||    
T  33351530 attaggagagcttgctcttctagggcatccttt-attaaggacgacagtgttgtagtgaaagacttggtgaggcaaagtatagctggtattggagagaac 33351432  T
Q  431 attactgtgcggcgttttgttcggttcactct 462  Q
    ||||  | ||||||||||||||||||||||||    
T  33351431 attaaagcgcggcgttttgttcggttcactct 33351400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 33395230 - 33395008
Alignment:
Q  21 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgga 120  Q
    |||||||||||||||| || | ||  |||||||||||||||| || ||||||| ||||| ||| |||   |||||| ||||||||||| |||||||| ||    
T  33395230 ctgacaagaaatccggtaggctagcagctgaaggaagaatcggtaaatacattgacgatgcacgcatctatgttctgattgaagtgaactgtgaaaccga 33395131  T
Q  121 ctttatcggta--gaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagata 218  Q
    |||| | || |  ||||||| | |||||||||||| |||  ||||||| ||||||||   ||||||||||||||||||||||||||||||||||||| ||    
T  33395130 ctttgttggcacagaagtgatagattcaaggagttggttgctgatctttcaatgcaataggctgcttgtccacaggttcagtttgtatctattgaaggta 33395031  T
Q  219 ttcctaaaaccactgtgacgaag 241  Q
    ||| | |||||| || |||||||    
T  33395030 ttcttgaaaccattgcgacgaag 33395008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 306 - 416
Target Start/End: Complemental strand, 33292912 - 33292802
Alignment:
Q  306 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 405  Q
    ||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||||||||||||||||||||||||||   | |||||||||| ||||||    
T  33292912 ttgttgagggaagaatctcaaagaggttaggagggctttctcttatagagcagcctttcattaaggatgacagtgtttctttgaaagacttggagaggca 33292813  T
Q  406 aagtatagctg 416  Q
    |||||||||||    
T  33292812 aagtatagctg 33292802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 33258372 - 33258187
Alignment:
Q  21 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 119  Q
    |||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || || ||||||||||||| |||||||||||||||||||  ||||||| |    
T  33258372 ctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccg 33258273  T
Q  120 actttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttcagtttgt 204  Q
    ||||| | || |||||||||||||| |||||||| ||| | ||||||||||||||||| |||  || |||||||||||||||||||    
T  33258272 actttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttcagtttgt 33258187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 33258170 - 33258067
Alignment:
Q  345 ctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattactgtgcggcg 444  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |||| |||||| |||||  ||| ||||    
T  33258170 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcg 33258071  T
Q  445 tttt 448  Q
    ||||    
T  33258070 tttt 33258067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 33293078 - 33292988
Alignment:
Q  140 aaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaacca 230  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||  |||||||    
T  33293078 aaattcaaggagttggttaatgatcttgcaatgcaagttgctgctattcttcaggttcagtttgtatctattgaagatattctcaaaacca 33292988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 33269427 - 33269355
Alignment:
Q  310 tgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgtt 382  Q
    |||||||| |||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  33269427 tgagggaaaaatctcaaagaggttaggagagcttgctcttctagagtagccttttattaaggatgacagtgtt 33269355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 33279068 - 33278972
Alignment:
Q  51 aaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 147  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  33279068 aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 33278972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 488 - 617
Target Start/End: Complemental strand, 33414254 - 33414117
Alignment:
Q  488 gttttcaagaaaagtatttgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaa---------tcataataaccaaa 578  Q
    |||||||||| ||||| | ||||||||||||||||||||||||| |  |||||||||| |||||||| |||||||||         ||||||||||||||    
T  33414254 gttttcaagagaagtaatcgttgcattttcataggaagaagtatgcggcagagtgagaccaattttg-aaacagaaatctgcttcttcataataaccaaa 33414156  T
Q  579 tgttgattagacgccaatacattttactgatatgtatct 617  Q
    |||||||||| |||  | || |||||||||| |||||||    
T  33414155 tgttgattaggcgcggacacgttttactgatctgtatct 33414117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 476 - 614
Target Start/End: Complemental strand, 33351363 - 33351212
Alignment:
Q  476 atagcttaaaaagttttcaagaaaagtatttgt---tgcattttcataggaagaagtatacaacagagtgagatcaa-ttttgaaaacagaaa------- 564  Q
    |||||||| || | |||||||| ||||||||||   ||||||||||||||||||||||| |  | |||||||||||| |||||||||||||||           
T  33351363 atagcttacaacgctttcaagacaagtatttgtctttgcattttcataggaagaagtatgctgcggagtgagatcaatttttgaaaacagaaatcttgtt 33351264  T
Q  565 --tcataataaccaaatgttgattagacgccaatacattttactgatatgta 614  Q
      |||||||||||||||||||||||| |||  | ||||||||||||| ||||    
T  33351263 cttcataataaccaaatgttgattaggcgcggacacattttactgatctgta 33351212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 33280481 - 33280358
Alignment:
Q  21 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgga 120  Q
    ||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || ||    
T  33280481 ctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactga 33280382  T
Q  121 ctttatcggtagaagtgagaaatt 144  Q
    |||| | || ||||||||||||||    
T  33280381 cttttttggcagaagtgagaaatt 33280358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 31567428 - 31567468
Alignment:
Q  332 ttaggagagcttgctcttctagagcagcctttcattaagga 372  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  31567428 ttaggagagctttctcttctagagcagcctttcattaagga 31567468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 33293150 - 33293090
Alignment:
Q  21 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattc 81  Q
    |||| ||||||||| |||||| ||  |||||||||||||| | ||||||||||||||||||    
T  33293150 ctgataagaaatccagaagactagcagctgaaggaagaattggtacatacattcacgattc 33293090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 306 - 472
Target Start/End: Original strand, 17445747 - 17445910
Alignment:
Q  306 ttgttgagggaagaatctcaaagagattaggagagcttgctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggca 405  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||    
T  17445747 ttgtcgagggaaggatctcaaagaggttaggagagcttgctcttctagagcagcctttcattaaggatgacagcgtttcagtgaaatatttggtgaggca 17445846  T
Q  406 aagtatagctgccattggcgagaacattactgtgcggcgttttgttcggttcactcttggagaaaca 472  Q
    |||||||||||| ||||| |||    |||  ||||||||||||||| |||||||||  |||||||||    
T  17445847 aagtatagctgctattggagag---tttaaagtgcggcgttttgttaggttcactcccggagaaaca 17445910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 17447805 - 17447982
Alignment:
Q  21 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgga 120  Q
    |||| ||||||||||||||||  |  |||||||||||||||| |||||||||||||||| ||| |||  ||| |||||||||| |||| | |||||| ||    
T  17447805 ctgataagaaatccggaagactggcagctgaaggaagaatcggtacatacattcacgatgcacgcatcggtggtctaattgaattgaactttgaaaccga 17447904  T
Q  121 ctttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgcttgtccacaggttca 198  Q
    |||| | || ||||| |||| |||||||||||| ||| ||||||||||||||||||| ||||||| ||||||||||||    
T  17447905 ctttgttggcagaagggagagattcaaggagttggttgatgatcttgcaatgcaagtggctgcttttccacaggttca 17447982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 490 - 566
Target Start/End: Original strand, 17445951 - 17446026
Alignment:
Q  490 tttcaagaaaagtatttgttgcattttcataggaagaagtatacaacagagtgagatcaattttgaaaacagaaatc 566  Q
    |||||||| ||||||||||||||||||||||||||||||||| |  ||||||||||||||||||| |||||||||||    
T  17445951 tttcaagacaagtatttgttgcattttcataggaagaagtatgcggcagagtgagatcaattttg-aaacagaaatc 17446026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 169 - 241
Target Start/End: Original strand, 17445607 - 17445679
Alignment:
Q  169 aatgcaagttgctgcttgtccacaggttcagtttgtatctattgaagatattcctaaaaccactgtgacgaag 241  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||  |||||| ||||| ||||    
T  17445607 aatgcaagttgatgcttgtccacatgttcagtttgtatctattgaagatattcccgaaaccattgtgaagaag 17445679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 74; Significance: 1e-33; HSPs: 4)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 2493 - 2308
Alignment:
Q  21 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacata-cattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgg 119  Q
    |||| ||||||||||| |||| ||  |  ||||||||||||| |||||| || || ||||||||||||| |||||||||||||||||||  ||||||| |    
T  2493 ctgataagaaatccgggagactagcagaagaaggaagaatcggtacatatcactcgcgattcacacattggtgttctaattgaagtgaacggtgaaaccg 2394  T
Q  120 actttatcggtagaagtgagaaattcaaggagtttgttcatgatcttgcaatgcaagttgctgctt-gtccacaggttcagtttgt 204  Q
    ||||| | || |||||||||||||| |||||||| ||| | ||||||||||||||||| |||  || |||||||||||||||||||    
T  2393 actttgttggcagaagtgagaaatttaaggagttggttgacgatcttgcaatgcaagtagctttttggtccacaggttcagtttgt 2308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 345 - 448
Target Start/End: Complemental strand, 2291 - 2188
Alignment:
Q  345 ctcttctagagcagcctttcattaaggatgacagtgttttagtaaaagacttggtgaggcaaagtatagctgccattggcgagaacattactgtgcggcg 444  Q
    ||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||| |||| |||||| |||||  ||| ||||    
T  2291 ctcttctagagaagcctttcattaaggatgacagtgtttcagtgaaaaacttggtgaggcgaagtatagctggcatttgcgagaccattaaagtgtggcg 2192  T
Q  445 tttt 448  Q
    ||||    
T  2191 tttt 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 51 - 147
Target Start/End: Original strand, 15185 - 15281
Alignment:
Q  51 aaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacggactttatcggtagaagtgagaaattcaa 147  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||||||   || |||||| ||||||||||    
T  15185 aaggaagaattggtacatacattcacgattcacacatcagtgttctaattgaagttaactgtgaaaccgactttgatggcagaagttagaaattcaa 15281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 13772 - 13895
Alignment:
Q  21 ctgacaagaaatccggaagacgagttgctgaaggaagaatcgctacatacattcacgattcacacattagtgttctaattgaagtgaaatgtgaaacgga 120  Q
    ||||||||||||||||||||  |   ||||||||| |||||  ||| |||||||||||||||| |||| || ||||| ||||||| || ||||| || ||    
T  13772 ctgacaagaaatccggaagattaaaagctgaaggaggaatcagtacctacattcacgattcacgcattggttttctatttgaagttaactgtgatactga 13871  T
Q  121 ctttatcggtagaagtgagaaatt 144  Q
    |||| | || ||||||||||||||    
T  13872 cttttttggcagaagtgagaaatt 13895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University