View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16658_low_46 (Length: 242)
Name: NF16658_low_46
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 38343414 - 38343627
Alignment:
| Q |
1 |
tattcagagccacgactccgtctaattgagttcnnnnnnntcgtacaatagaaatgggaagcattcagatccaaacatttttaaccaaagaggagtcccg |
100 |
Q |
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| T |
38343414 |
tattcagagccacgactccgtctaattgagttcaaaaaaatcgtacaatagaaatgggaagcattcagatccaaacatttttaaccaaagaggagtcccg |
38343513 |
T |
|
| Q |
101 |
aaaagcatgaaaatggtcttcaatagcattattgcatatagggcaaatatcattagttgacattcttctatgaattctgatggtgtttgttaataaagat |
200 |
Q |
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||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38343514 |
aaaagcatgaaaatggtcttcaatagcatga--------agggcaaatatcattagttgacattcttctatgaattctgatggtgattgttaataaagat |
38343605 |
T |
|
| Q |
201 |
aaagataaaaatgcatgactta |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
38343606 |
aaagataaaaatgcatgactta |
38343627 |
T |
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