View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16658_low_48 (Length: 238)
Name: NF16658_low_48
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_low_48 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: scaffold0710 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 5026 - 4812
Alignment:
| Q |
1 |
ttgttcggaaaatgtcaacaaacagatactcctcttttatgatttaataaataaatgcttacctaaaacaaaaactgcagcaccaatgaatactgctcga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5026 |
ttgttcggaaaatgtcaacaaacagatactcctcttttatgatttaataaataaatgcttacctaaaacaaaaactgcagcaccaatgaatactgctcga |
4927 |
T |
|
| Q |
101 |
aaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcataaggttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4926 |
aaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcataaggttc |
4827 |
T |
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| Q |
201 |
ctcctgaaatcataa |
215 |
Q |
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|||||| |||||||| |
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| T |
4826 |
ctcctgcaatcataa |
4812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 51861067 - 51860853
Alignment:
| Q |
1 |
ttgttcggaaaatgtcaacaaacagatactcctcttttatgatttaataaataaatgcttacctaaaacaaaaactgcagcaccaatgaatactgctcga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51861067 |
ttgttcggaaaatgtcaacaaacagatactcctcttttatgatttaataaataaatgcttacctaaaacaaaaactgcagcaccaatgaatactgctcga |
51860968 |
T |
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| Q |
101 |
aaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcataaggttc |
200 |
Q |
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| T |
51860967 |
aaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcataaggttc |
51860868 |
T |
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| Q |
201 |
ctcctgaaatcataa |
215 |
Q |
| |
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|||||| |||||||| |
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| T |
51860867 |
ctcctgcaatcataa |
51860853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 58 - 215
Target Start/End: Complemental strand, 51821040 - 51820883
Alignment:
| Q |
58 |
cttacctaaaacaaaaactgcagcaccaatgaatactgctcgaaaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatcccgct |
157 |
Q |
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||||||||||| |||||| |||||||||||||| | |||||||||||| || |||| |||||||||||||||||| ||||||||||||||||| ||| |
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| T |
51821040 |
cttacctaaaagaaaaaccgcagcaccaatgaaaattgctcgaaaaatctgatcagggttatctgcaagatactcaataaaaaatgccaacaatcctgct |
51820941 |
T |
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| Q |
158 |
gacagcgtccctaatcctctattaagtcctttgcataaggttcctcctgaaatcataa |
215 |
Q |
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|| || || |||||||| || |||||||||| ||| || ||||||| |||||||| |
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| T |
51820940 |
aacgaagttcccaatcctctgtttagtcctttgcttaaagtccctcctgcaatcataa |
51820883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 217
Target Start/End: Complemental strand, 51850577 - 51850415
Alignment:
| Q |
55 |
atgcttacctaaaacaaaaactgcagcaccaatgaatactgctcgaaaaatacgaccaggtgcatctgcaagatactcaattaaaaatgccaacaatccc |
154 |
Q |
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|
|||||||||||||| ||||||||||||||| ||||| | ||| ||||||| | ||||| |||||||||||||| ||| || |||||||| |||| |
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| T |
51850577 |
atgcttacctaaaataaaaactgcagcaccgatgaaaattgcatgaaaaatctggccaggaacatctgcaagataccgaataaagaatgccaatgatcct |
51850478 |
T |
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| Q |
155 |
gctgacagcgtccctaatcctctattaagtcctttgcataaggttcctcctgaaatcataatc |
217 |
Q |
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||| ||| || || ||||||||||| |||||||||||||||||||| ||| |||||||||| |
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| T |
51850477 |
gctaacaaagttcccaatcctctatttagtcctttgcataaggttccccctacaatcataatc |
51850415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 195
Target Start/End: Original strand, 4782223 - 4782279
Alignment:
| Q |
139 |
aaatgccaacaatcccgctgacagcgtccctaatcctctattaagtcctttgcataa |
195 |
Q |
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||||||||| ||||| ||| |||| ||||| |||||||| ||||| ||||||||||| |
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| T |
4782223 |
aaatgccaataatccagctaacagtgtccccaatcctctgttaagccctttgcataa |
4782279 |
T |
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