View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16658_low_5 (Length: 557)

Name: NF16658_low_5
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16658_low_5
NF16658_low_5
[»] chr7 (25 HSPs)
chr7 (187-557)||(48868121-48868492)
chr7 (19-111)||(41386811-41386903)
chr7 (18-128)||(40491558-40491668)
chr7 (16-161)||(45004965-45005112)
chr7 (18-111)||(38123661-38123754)
chr7 (1-110)||(24109457-24109567)
chr7 (4-111)||(45557362-45557470)
chr7 (18-111)||(17111854-17111935)
chr7 (42-110)||(30182315-30182383)
chr7 (19-111)||(597942-598033)
chr7 (31-111)||(1410959-1411039)
chr7 (22-110)||(22195862-22195950)
chr7 (18-89)||(45997706-45997778)
chr7 (4-126)||(42344670-42344793)
chr7 (22-128)||(27571842-27571948)
chr7 (60-130)||(28725089-28725159)
chr7 (34-130)||(31625401-31625495)
chr7 (76-111)||(26984533-26984568)
chr7 (60-130)||(5489883-5489953)
chr7 (18-88)||(42816463-42816533)
chr7 (74-111)||(35105155-35105192)
chr7 (18-111)||(40561753-40561846)
chr7 (18-81)||(12306748-12306813)
chr7 (23-87)||(32683582-32683646)
chr7 (22-66)||(44638444-44638488)
[»] chr6 (32 HSPs)
chr6 (22-161)||(4910853-4910994)
chr6 (23-111)||(765388-765474)
chr6 (4-128)||(16540087-16540212)
chr6 (18-130)||(3482024-3482136)
chr6 (4-128)||(25195346-25195469)
chr6 (19-130)||(5724626-5724737)
chr6 (18-85)||(17225875-17225942)
chr6 (22-130)||(26280583-26280691)
chr6 (48-124)||(30927027-30927103)
chr6 (35-130)||(6654102-6654197)
chr6 (22-111)||(1485145-1485234)
chr6 (22-161)||(34620831-34620972)
chr6 (22-161)||(34748268-34748409)
chr6 (31-111)||(25195847-25195927)
chr6 (4-111)||(8854917-8855024)
chr6 (18-128)||(852512-852622)
chr6 (18-111)||(8860501-8860594)
chr6 (39-119)||(7952725-7952805)
chr6 (16-91)||(34910964-34911037)
chr6 (4-82)||(434217-434296)
chr6 (18-111)||(957618-957711)
chr6 (8-100)||(31305831-31305924)
chr6 (16-81)||(34027410-34027475)
chr6 (4-111)||(4907960-4908067)
chr6 (18-110)||(6895945-6896037)
chr6 (22-130)||(2234493-2234602)
chr6 (16-81)||(9505797-9505862)
chr6 (35-88)||(19601457-19601510)
chr6 (33-86)||(33496649-33496702)
chr6 (18-81)||(947594-947655)
chr6 (22-110)||(3436882-3436969)
chr6 (442-511)||(17441186-17441257)
[»] chr8 (34 HSPs)
chr8 (4-130)||(32927870-32927997)
chr8 (16-111)||(15677808-15677904)
chr8 (4-130)||(4662883-4663010)
chr8 (4-108)||(35494990-35495095)
chr8 (22-110)||(13384653-13384741)
chr8 (23-110)||(38868496-38868583)
chr8 (22-111)||(26100145-26100234)
chr8 (18-111)||(32994237-32994330)
chr8 (4-130)||(37684383-37684510)
chr8 (32-130)||(44141059-44141157)
chr8 (18-130)||(16972059-16972171)
chr8 (18-110)||(38335856-38335948)
chr8 (4-99)||(40848026-40848122)
chr8 (18-88)||(32736482-32736552)
chr8 (21-110)||(6027047-6027136)
chr8 (22-111)||(7244600-7244689)
chr8 (16-110)||(30098908-30099000)
chr8 (53-131)||(10367972-10368050)
chr8 (18-67)||(5859058-5859107)
chr8 (46-111)||(11574267-11574332)
chr8 (23-111)||(18355850-18355936)
chr8 (26-130)||(26668530-26668632)
chr8 (23-111)||(7644561-7644654)
chr8 (83-161)||(42455857-42455937)
chr8 (16-66)||(7601944-7601993)
chr8 (60-110)||(11572495-11572545)
chr8 (16-66)||(32681297-32681347)
chr8 (19-85)||(38868766-38868832)
chr8 (51-108)||(10378227-10378283)
chr8 (23-108)||(32767387-32767472)
chr8 (25-130)||(35495238-35495343)
chr8 (16-92)||(6213305-6213381)
chr8 (22-130)||(32101051-32101159)
chr8 (22-58)||(38257622-38257658)
[»] chr1 (45 HSPs)
chr1 (4-125)||(1514326-1514448)
chr1 (4-101)||(7524120-7524218)
chr1 (4-130)||(28083868-28083995)
chr1 (18-111)||(11049247-11049340)
chr1 (25-111)||(7790644-7790730)
chr1 (21-130)||(6021782-6021891)
chr1 (4-107)||(30557505-30557607)
chr1 (18-107)||(30850394-30850483)
chr1 (18-110)||(3016160-3016252)
chr1 (16-161)||(47321900-47322046)
chr1 (441-529)||(28020602-28020692)
chr1 (24-111)||(28287337-28287424)
chr1 (26-116)||(2099691-2099781)
chr1 (25-110)||(3416078-3416163)
chr1 (26-111)||(30996039-30996124)
chr1 (25-130)||(38797631-38797736)
chr1 (18-105)||(34915069-34915156)
chr1 (22-128)||(10324937-10325043)
chr1 (22-119)||(48549013-48549108)
chr1 (29-111)||(50571281-50571363)
chr1 (51-104)||(51500862-51500915)
chr1 (18-110)||(3134727-3134819)
chr1 (18-85)||(213532-213599)
chr1 (25-111)||(47553934-47554021)
chr1 (461-539)||(23915659-23915737)
chr1 (33-106)||(3515820-3515893)
chr1 (39-128)||(15986237-15986326)
chr1 (18-102)||(27849145-27849230)
chr1 (33-105)||(40662991-40663061)
chr1 (16-101)||(44801592-44801677)
chr1 (461-529)||(45581070-45581138)
chr1 (19-58)||(27500335-27500374)
chr1 (25-111)||(8381963-8382049)
chr1 (40-110)||(34387710-34387780)
chr1 (60-105)||(36780153-36780199)
chr1 (467-541)||(40159698-40159772)
chr1 (18-99)||(3909870-3909951)
chr1 (22-111)||(11817316-11817404)
chr1 (18-85)||(26373539-26373603)
chr1 (4-104)||(32370011-32370112)
chr1 (22-99)||(34721839-34721916)
chr1 (21-78)||(39395918-39395975)
chr1 (17-69)||(2555940-2555992)
chr1 (18-82)||(14334058-14334122)
chr1 (18-110)||(47555864-47555955)
[»] chr4 (50 HSPs)
chr4 (6-130)||(32818352-32818477)
chr4 (4-111)||(21691192-21691300)
chr4 (38-111)||(30357509-30357582)
chr4 (18-110)||(8604617-8604709)
chr4 (4-130)||(35065041-35065168)
chr4 (18-125)||(16551940-16552045)
chr4 (26-130)||(26617446-26617550)
chr4 (32-130)||(50061637-50061735)
chr4 (18-128)||(55927765-55927875)
chr4 (18-111)||(1616388-1616480)
chr4 (17-111)||(14596686-14596782)
chr4 (16-161)||(39386578-39386725)
chr4 (35-129)||(9134589-9134681)
chr4 (22-111)||(31012737-31012827)
chr4 (31-105)||(49138771-49138845)
chr4 (46-111)||(30357644-30357709)
chr4 (27-96)||(42971906-42971975)
chr4 (38-130)||(55186979-55187069)
chr4 (22-110)||(9064229-9064317)
chr4 (4-111)||(53713541-53713649)
chr4 (4-98)||(33843987-33844084)
chr4 (30-128)||(20712821-20712919)
chr4 (4-128)||(39733620-39733742)
chr4 (18-88)||(45011894-45011964)
chr4 (30-130)||(30889765-30889865)
chr4 (23-130)||(33456352-33456457)
chr4 (22-81)||(4243414-4243473)
chr4 (22-81)||(10185221-10185280)
chr4 (35-110)||(20718615-20718690)
chr4 (5-79)||(45694643-45694718)
chr4 (23-106)||(52965854-52965937)
chr4 (73-126)||(11271587-11271641)
chr4 (34-130)||(2206354-2206451)
chr4 (53-105)||(16643981-16644033)
chr4 (442-539)||(19455199-19455298)
chr4 (22-128)||(22683843-22683950)
chr4 (53-128)||(25927288-25927363)
chr4 (16-111)||(29904229-29904324)
chr4 (20-111)||(33347167-33347258)
chr4 (18-161)||(2326806-2326951)
chr4 (22-128)||(46344832-46344936)
chr4 (27-110)||(15846817-15846897)
chr4 (60-128)||(18597019-18597088)
chr4 (77-128)||(8283419-8283471)
chr4 (53-128)||(8330095-8330171)
chr4 (26-58)||(27967426-27967458)
chr4 (27-111)||(28009572-28009656)
chr4 (75-111)||(29779106-29779142)
chr4 (26-110)||(30472932-30473016)
chr4 (22-78)||(47596300-47596356)
[»] chr5 (33 HSPs)
chr5 (19-110)||(18851078-18851169)
chr5 (18-125)||(9818717-9818825)
chr5 (4-110)||(38845441-38845549)
chr5 (18-110)||(31906257-31906349)
chr5 (18-111)||(42858105-42858198)
chr5 (18-110)||(6951300-6951392)
chr5 (25-111)||(18637281-18637365)
chr5 (18-110)||(11648080-11648170)
chr5 (24-105)||(15368376-15368457)
chr5 (31-111)||(22572412-22572492)
chr5 (22-109)||(22226235-22226322)
chr5 (23-105)||(2937582-2937664)
chr5 (34-111)||(39097243-39097320)
chr5 (25-88)||(28110440-28110503)
chr5 (19-130)||(36639915-36640026)
chr5 (23-128)||(5468753-5468859)
chr5 (23-128)||(13171760-13171866)
chr5 (37-110)||(14299328-14299401)
chr5 (19-66)||(10898763-10898810)
chr5 (33-87)||(370743-370797)
chr5 (33-130)||(34250363-34250458)
chr5 (20-101)||(35108246-35108327)
chr5 (42-111)||(38587084-38587152)
chr5 (18-58)||(3993860-3993900)
chr5 (18-110)||(28031169-28031260)
chr5 (17-111)||(33608500-33608595)
chr5 (25-84)||(35073440-35073499)
chr5 (24-130)||(42439618-42439725)
chr5 (42-110)||(11132804-11132873)
chr5 (73-128)||(3970450-3970506)
chr5 (21-81)||(8549916-8549976)
chr5 (21-85)||(15368496-15368560)
chr5 (18-110)||(36290033-36290125)
[»] chr2 (29 HSPs)
chr2 (18-128)||(33019151-33019261)
chr2 (22-110)||(42740975-42741063)
chr2 (4-129)||(16518758-16518883)
chr2 (18-127)||(42982523-42982634)
chr2 (4-130)||(22535976-22536103)
chr2 (25-130)||(10644581-10644686)
chr2 (18-111)||(43501122-43501213)
chr2 (23-131)||(30503186-30503294)
chr2 (18-125)||(11504057-11504163)
chr2 (46-130)||(2002718-2002802)
chr2 (4-111)||(13912784-13912892)
chr2 (22-111)||(44439250-44439340)
chr2 (23-87)||(33502258-33502322)
chr2 (19-105)||(5533027-5533113)
chr2 (18-111)||(12037058-12037150)
chr2 (441-552)||(14103254-14103367)
chr2 (22-162)||(33502847-33502990)
chr2 (22-110)||(3352074-3352162)
chr2 (19-91)||(8800694-8800766)
chr2 (31-110)||(31453381-31453460)
chr2 (19-105)||(4779111-4779197)
chr2 (35-77)||(11759871-11759913)
chr2 (20-78)||(33961978-33962036)
chr2 (473-530)||(2578088-2578145)
chr2 (74-111)||(21234576-21234613)
chr2 (4-88)||(33047562-33047647)
chr2 (90-130)||(680344-680384)
chr2 (33-128)||(3476439-3476535)
chr2 (39-91)||(31080156-31080208)
[»] scaffold0168 (1 HSPs)
scaffold0168 (4-161)||(31771-31934)
[»] chr3 (34 HSPs)
chr3 (4-101)||(31708219-31708317)
chr3 (22-111)||(52364048-52364137)
chr3 (22-110)||(4526130-4526218)
chr3 (16-161)||(40736531-40736677)
chr3 (4-128)||(25359554-25359679)
chr3 (18-130)||(35264406-35264518)
chr3 (31-130)||(44771672-44771771)
chr3 (19-104)||(32523336-32523422)
chr3 (18-111)||(47356240-47356333)
chr3 (18-110)||(42913052-42913144)
chr3 (18-85)||(41596144-41596211)
chr3 (16-91)||(46853527-46853602)
chr3 (18-130)||(7717323-7717428)
chr3 (60-110)||(35058065-35058115)
chr3 (25-130)||(35058339-35058445)
chr3 (18-152)||(36302139-36302273)
chr3 (18-128)||(37335029-37335139)
chr3 (18-105)||(31013021-31013108)
chr3 (19-105)||(27266790-27266876)
chr3 (35-105)||(31492770-31492839)
chr3 (55-105)||(42375528-42375578)
chr3 (55-105)||(42404242-42404292)
chr3 (22-111)||(40147849-40147938)
chr3 (18-95)||(52141243-52141320)
chr3 (18-128)||(5406886-5406994)
chr3 (33-87)||(4401416-4401470)
chr3 (461-539)||(9505183-9505261)
chr3 (462-539)||(28700997-28701074)
chr3 (74-111)||(32111991-32112028)
chr3 (74-111)||(41115413-41115450)
chr3 (36-129)||(44958619-44958712)
chr3 (22-106)||(3776524-3776608)
chr3 (75-111)||(40339223-40339259)
chr3 (43-107)||(46943171-46943234)
[»] scaffold0005 (1 HSPs)
scaffold0005 (17-111)||(220596-220692)


Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 187 - 557
Target Start/End: Complemental strand, 48868492 - 48868121
Alignment:
Q  187 tttgcgcatgatcgcaaaacccttgaaggatag-tacaactaccgtgtgcatatcttcgcaagggtgtgtgtgtaatccttttggacgtgagtctaatcg 285  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||    
T  48868492 tttgcgcatgatcgcaaaacccttgaaggataggtacaactaccgtgtgcatatcttcgcaagggtgtgtgt--aatccttttggacttgagtctaatcg 48868395  T
Q  286 tatgtgagttgatagaaggtgttgagaaggaggcctccatcgttgatcggttatccgccttcgatggccgtaagtatgtggtttattcatggaccaaaag 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48868394 tatgtgagttgatagaaggtgttgagaaggaggcctccatcgttgatcggttatccgccttcgacggccgtaagtatgtggtttattcatggaccaaaag 48868295  T
Q  386 aatgatatagtcatatagaggtagcaatagactgagccaacacaaatatatgttggaactcgatttaataattaa--cgttaaacttagttcatgaatca 483  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||    
T  48868294 aatgatatagtcatatagaggtagcaatagaccgagccaacacaaatatatgttggaactcgatttaataattaattcgttaaacttaattcatgaatca 48868195  T
Q  484 aatgagttgaccttaaactgaaaattaaattaattaactaaatgagtagaacttgaacaagatatattttacct 557  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  48868194 aatgagttgaccttaaactgaaaattaaattaattaattaaatgagtagaacttgaacaacatatattttacct 48868121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 41386811 - 41386903
Alignment:
Q  19 ttcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||| |||| ||||||||| |||||||||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  41386811 ttcatgcaaaagtgagttgaattataaatttgtgtgtaaatatcaattctagaattaaaagctacaaatcctagcttcaagtagaatcaattc 41386903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 40491668 - 40491558
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggagg 117  Q
    |||||||||||| |||||| |||| ||||||||||||||||  ||||||||| |||||||||||||||| | || ||||||||||| ||||||| | |||    
T  40491668 attcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaattctagaatcaaaagctacaaaacttaacttcaagtagagtcaattctgaagg 40491569  T
Q  118 cagaatcaatt 128  Q
    || ||||||||    
T  40491568 caaaatcaatt 40491558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 45005112 - 45004965
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccgga 115  Q
    ||||| |||||||| |||||||||  ||||||||| |||  |||||||||||||||||||||  || ||| |  |||||||||||||||||||||| | |    
T  45005112 atatttatgtaaaagtgagttgaataataaatttgagtgctaagatcaattctataatcaaagcctccaatttttagcttcaagtagaatcaattctgaa 45005013  T
Q  116 ggcagaatcaattcttattcta---caaccaaacatgtcaaaatcaatt 161  Q
    |||| |||||||||| |||| |   ||||||||||||||||||||||||    
T  45005012 ggcaaaatcaattct-attcgagagcaaccaaacatgtcaaaatcaatt 45004965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 38123661 - 38123754
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||||| |||||||| | ||||||||| ||||||| |||||||||| ||| | ||||||||| |  ||||||||||||||||||||||    
T  38123661 attcatgtaaaagtgagttgaccaataaatttgagtgtaaaaatcaattctagaattagaagctacaatttctagcttcaagtagaatcaattc 38123754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 24109567 - 24109457
Alignment:
Q  1 tgttttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaag 99  Q
    |||||||||||| || || ||||||||||| |||| || |||||| |||||||||| || |||| || | ||| ||||| ||||||||||||||||||||    
T  24109567 tgttttgtgttttgatatgttcatgtaaaagtgagctggactatagatttgtgtgtgaaaatcatttttgtaaccaaaatctacaaatcatagcttcaag 24109468  T
Q  100 tagaatcaatt 110  Q
     ||||||||||    
T  24109467 cagaatcaatt 24109457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 45557470 - 45557362
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | |||||||||||| |||||||| ||| ||||||||||||||| |||||| ||| ||| |||||||||| ||  ||||||| || |     
T  45557470 tttgtgtttggatacattcatgtaaaagtgagttgagctacaaatttgtgtgtaaaaatcaatcctagaattaaaagctacagattctagcttctagcaa 45557371  T
Q  103 aatcaattc 111  Q
    |||||||||    
T  45557370 aatcaattc 45557362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 17111935 - 17111854
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||||||||||| ||| ||||||||||||||||            | |||||||||||||||||||||||||||||||||||||||||    
T  17111935 attcatgtaaaaatgagtagaattataaatttgtgtgta------------agaatcaaaagctacaaatcatagcttcaagtagaatcaattc 17111854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 30182315 - 30182383
Alignment:
Q  42 ataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    ||||||||| ||||||| || ||||||| ||||||||||||||| |  |||||||||||||||||||||    
T  30182315 ataaatttgagtgtaaaaattaattctagaatcaaaagctacaatttttagcttcaagtagaatcaatt 30182383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 597942 - 598033
Alignment:
Q  19 ttcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||||||| |||||||||| ||||||||  ||| ||  ||||||| || |||| |||||||| |||  ||||||||||||||||||||||    
T  597942 ttcatgtaaaagtgagttgaacaataaattttagtgcaagaatcaattatagaatcgaaagctac-aattttagcttcaagtagaatcaattc 598033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 1411039 - 1410959
Alignment:
Q  31 tgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||||| | |||||||| |||| || |||||||||| || ||||| |||||||| ||| |||||| ||||||||||||    
T  1411039 tgagttgaattgtaaatttgcgtgtgaaaatcaattctaaaaacaaaatctacaaattataacttcaaatagaatcaattc 1410959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 22195950 - 22195862
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||| ||| || |||||||||| ||  ||| || ||||||| || ||||||||| ||||||||||||||| ||||| ||||||||    
T  22195950 atgtaaaagtgaattaaactataaatatgcatgtgaaaatcaattttagaatcaaaagttacaaatcatagcttaaagtaaaatcaatt 22195862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 45997778 - 45997706
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtg-tgtaaagatcaattctataatcaaaagctacaaatca 89  Q
    ||||||| ||||| ||||||||||||||||||||| |||||| || |||| || |||||||||||| ||||||    
T  45997778 attcatgcaaaaaagagttgaactataaatttgtgttgtaaaaataaattatagaatcaaaagctataaatca 45997706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 126
Target Start/End: Original strand, 42344670 - 42344793
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    ||||||||| || |||||||||||| |||||||||||||  |||||| || ||||| ||||||| || ||||| | |||||||||   | |||||| |||    
T  42344670 tttgtgtttagatatattcatgtaataatgagttgaacttcaaatttatgagtaaaaatcaattatagaatcagatgctacaaatttcaacttcaaatag 42344769  T
Q  103 aatcaattccggaggcagaatcaa 126  Q
    ||| ||||| ||| ||| ||||||    
T  42344770 aataaattctggaagcaaaatcaa 42344793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 27571948 - 27571842
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcaga 121  Q
    |||||||  |||||||||  ||||| ||| |||| || |||||||||| ||||||||||| ||| |  || |||||||||||||||||||  |||| | |    
T  27571948 atgtaaatgtgagttgaataataaacttgagtgttaaaatcaattctagaatcaaaagctccaatttctaacttcaagtagaatcaattcttgaggtaaa 27571849  T
Q  122 atcaatt 128  Q
    |||||||    
T  27571848 atcaatt 27571842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 28725089 - 28725159
Alignment:
Q  60 atcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaattct 130  Q
    ||||||| || |||||||||||||||||  |||||||||||| |||||||   |||||| |||||||||||    
T  28725089 atcaattatagaatcaaaagctacaaattctagcttcaagtataatcaatattggaggctgaatcaattct 28725159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 130
Target Start/End: Complemental strand, 31625495 - 31625401
Alignment:
Q  34 gttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaattct 130  Q
    ||||||||||||||||| ||| |||  |||||| ||||| |||| |||||||||| |||||| ||  |||||||||||  ||| || ||||||||||    
T  31625495 gttgaactataaatttgcgtgaaaa--tcaattttataaccaaaggctacaaatcctagctttaatgagaatcaattcaagagacaaaatcaattct 31625401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 26984533 - 26984568
Alignment:
Q  76 aaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||||||||| ||||||||||||||||||||||    
T  26984533 aaagctacaaatcttagcttcaagtagaatcaattc 26984568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 5489883 - 5489953
Alignment:
Q  60 atcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaattct 130  Q
    ||||||| |||||||||||||| ||| |  |||| ||||||||||||||||  ||||||| ||| ||||||    
T  5489883 atcaattatataatcaaaagctccaatttctagcatcaagtagaatcaattttggaggcaaaattaattct 5489953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 42816463 - 42816533
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatc 88  Q
    ||||||||| || ||| ||||| ||||||||||||||| || |||||||||| ||| ||||| || |||||    
T  42816463 attcatgtagaagtgaattgaattataaatttgtgtgtgaaaatcaattctagaattaaaagttataaatc 42816533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 35105192 - 35105155
Alignment:
Q  74 caaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  35105192 caaaaactacaaattatagcttcaagtagaatcaattc 35105155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 40561753 - 40561846
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||||| |||||||||| ||| ||||| ||||| | || ||||||| | | | || |||||| |  || |||||||||||||||||||    
T  40561753 attcatgtaaaagtgagttgaacaatatatttgagtgtataaattaattctagacttacaaactacaatttctaacttcaagtagaatcaattc 40561846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 12306813 - 12306748
Alignment:
Q  18 attcatgtaaaaatgagttgaactata---aatttgtgtgtaaagatcaattctataatcaaaagct 81  Q
    |||||||||||| ||||||||| ||||   |||||| ||||||| |||||||||| |||||||||||    
T  12306813 attcatgtaaaagtgagttgaa-tatagtgaatttgagtgtaaaaatcaattctaaaatcaaaagct 12306748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 32683646 - 32683582
Alignment:
Q  23 tgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaat 87  Q
    ||||||| |||||| || ||||||||| ||||  || ||||||||||  ||||||||||||||||    
T  32683646 tgtaaaagtgagttaaattataaatttatgtgggaaaatcaattctaatatcaaaagctacaaat 32683582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 44638444 - 44638488
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaatt 66  Q
    ||||||| | |||||||| |||||||||||||||||| |||||||    
T  44638444 atgtaaatacgagttgaattataaatttgtgtgtaaaaatcaatt 44638488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 5e-39; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 4910994 - 4910853
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcaga 121  Q
    |||||||| ||||| ||||||||||||||| ||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  4910994 atgtaaaagtgagtcgaactataaatttgtatgtgaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaatttttgaggcaga 4910895  T
Q  122 atcaattcttatt--ctacaaccaaacatgtcaaaatcaatt 161  Q
    ||||||||| |||  | |||||||||||||||| ||||||||    
T  4910894 atcaattctaattgacgacaaccaaacatgtcagaatcaatt 4910853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 765388 - 765474
Alignment:
Q  23 tgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||||||||||||||||||||||| | |  ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  765388 tgtaaaaatgagttgaactataaatttcttt--aataatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattc 765474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 16540212 - 16540087
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | ||| |||||||| |||||| |||||||||| |||  || ||  ||||||| |||||||||||||||||||| |||||||||||||    
T  16540212 tttgtgtttggatacattgatgtaaaagtgagtttaactataaatatgtaagtgaaactcaattcaataatcaaaagctacaaatcctagcttcaagtag 16540113  T
Q  103 aatcaattccggaggcagaatcaatt 128  Q
    ||||||||  |||| |||||||||||    
T  16540112 aatcaattttggagacagaatcaatt 16540087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 3482136 - 3482024
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggagg 117  Q
    |||||||||||| | |||||||||||||| |||||||| || |||||||||| ||||||| |||||||||| || ||||||||| |||||||||   ||     
T  3482136 attcatgtaaaagtaagttgaactataaacttgtgtgtgaaaatcaattctaaaatcaaaggctacaaatcttaacttcaagtataatcaattctaaaga 3482037  T
Q  118 cagaatcaattct 130  Q
    |||||||||||||    
T  3482036 cagaatcaattct 3482024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 25195346 - 25195469
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | ||| |||||||| ||||||||| | ||||||||||| | || ||||||| || ||| |||| |||||||||   |||||||||||    
T  25195346 tttgtgtttggatacatttatgtaaaagtgagttgaattgtaaatttgtgtatgaaaatcaattatagaatgaaaaactacaaatcc--gcttcaagtag 25195443  T
Q  103 aatcaattccggaggcagaatcaatt 128  Q
    ||||||||||||||||||||||||||    
T  25195444 aatcaattccggaggcagaatcaatt 25195469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 5724626 - 5724737
Alignment:
Q  19 ttcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggc 118  Q
    ||||| ||||| |||||| ||  ||| ||||||||||||| ||||||| || ||| ||||| |||||||| |||||||||||||||||||||  ||||||    
T  5724626 ttcatataaaagtgagttaaatgatatatttgtgtgtaaaaatcaattatagaataaaaagttacaaatcctagcttcaagtagaatcaattttggaggc 5724725  T
Q  119 agaatcaattct 130  Q
    | ||||||||||    
T  5724726 aaaatcaattct 5724737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 17225942 - 17225875
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaa 85  Q
    |||||||||||| ||||||||||||||||||||| |||||| |||||||||| |||||||||||||||    
T  17225942 attcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaattctagaatcaaaagctacaa 17225875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 26280691 - 26280583
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcaga 121  Q
    |||||||| |||||| ||||||||||||||  ||||| ||||||| |  |||||||| ||||||||  ||||||||||| ||||||||||  |||||| |    
T  26280691 atgtaaaagtgagtttaactataaatttgtacgtaaaaatcaattttggaatcaaaaactacaaattctagcttcaagtggaatcaattcttgaggcaaa 26280592  T
Q  122 atcaattct 130  Q
    |||||||||    
T  26280591 atcaattct 26280583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 30927103 - 30927027
Alignment:
Q  48 ttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatc 124  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||||||||| ||||||||| ||| ||| ||||    
T  30927103 ttgtgtgtaaaaatcaattctataatcaaaagctacgaatcttagcttcaagtataatcaattctggaagcaaaatc 30927027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 35 - 130
Target Start/End: Original strand, 6654102 - 6654197
Alignment:
Q  35 ttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaattct 130  Q
    ||||||||||||||| ||||| || ||||| |||| ||| |||||||||||||| |||||||||||||||| ||||| | ||| | ||||||||||    
T  6654102 ttgaactataaatttctgtgtgaaaatcaaatctagaattaaaagctacaaatcctagcttcaagtagaattaattctgaaggaaaaatcaattct 6654197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 1485145 - 1485234
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||| |||||||||| ||||||||| |||| || |||||||||| ||||||||||| ||| |  ||| ||||||||||||||||||    
T  1485145 atgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctccaatttctagattcaagtagaatcaattc 1485234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 34620972 - 34620831
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcaga 121  Q
    |||||||| |||||||||  ||||||||  ||||||| |||||||||| ||||| ||||||  | |  |||||||| ||||||||||||||||||||| |    
T  34620972 atgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctatgatttctagcttcatgtagaatcaattccggaggcaaa 34620873  T
Q  122 atcaattct-tattcta-caaccaaacatgtcaaaatcaatt 161  Q
    || ||||||   || ||  |||||||||||||||||||||||    
T  34620872 attaattctagtttataggaaccaaacatgtcaaaatcaatt 34620831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 34748409 - 34748268
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcaga 121  Q
    |||||||| |||||||||  ||||||||  ||||||| |||||||||| ||||| ||||||  | |  |||||||| ||||||||||||||||||||| |    
T  34748409 atgtaaaagtgagttgaaaaataaattttagtgtaaaaatcaattctagaatcagaagctatgatttctagcttcatgtagaatcaattccggaggcaaa 34748310  T
Q  122 atcaattct-tattcta-caaccaaacatgtcaaaatcaatt 161  Q
    || ||||||   || ||  |||||||||||||||||||||||    
T  34748309 attaattctagtttataggaaccaaacatgtcaaaatcaatt 34748268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 25195927 - 25195847
Alignment:
Q  31 tgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||||||||||||||||||| |  ||||||||| |||||||||||| ||||| ||| || || ||||||||||||    
T  25195927 tgagttgaactataaatttgtgtgtacaattcaattctagaatcaaaagctataaatcctagttttaattagaatcaattc 25195847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 8855024 - 8854917
Alignment:
Q  4 tttgtgtttggaatattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtaga 103  Q
    ||||||||||  | ||| |||||||| | |||| ||| |||||||||| |||||| |||||||||||| |||||| ||||||||  |||||||| |||||    
T  8855024 tttgtgtttgatacattaatgtaaaagtaagttcaaccataaatttgtatgtaaaaatcaattctatagtcaaaaactacaaattgtagcttcatgtaga 8854925  T
Q  104 atcaattc 111  Q
    | ||||||    
T  8854924 aacaattc 8854917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 852622 - 852512
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggagg 117  Q
    |||||||||||| |||||| ||| ||| ||||| ||||||| |||||||||| ||||| || |||||| |  ||||||||||| |||||||||  |||||    
T  852622 attcatgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaattctagaatcagaacctacaatttctagcttcaagttgaatcaattatggagg 852523  T
Q  118 cagaatcaatt 128  Q
    || ||| ||||    
T  852522 caaaataaatt 852512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 8860594 - 8860501
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||| |||| |||||||||| |||||||| ||||| || |||||||||  | | |||||||||||||||| |||||||| |||| ||||||    
T  8860594 attcatgcaaaagtgagttgaaccataaatttatgtgtcaaaatcaattcttaacttaaaagctacaaatcattgcttcaagcagaagcaattc 8860501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 7952725 - 7952805
Alignment:
Q  39 actataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggca 119  Q
    ||||||||||||||||| ||   |||||||| |||||||||||||||||| | |||||||||||||| ||||  |||||||    
T  7952725 actataaatttgtgtgtgaaacccaattctagaatcaaaagctacaaatcctcgcttcaagtagaataaattttggaggca 7952805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 34911037 - 34910964
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcata 91  Q
    |||||||||||||| | |||| ||||||||  |||||||| || |||||||||| |||||||||||||||||||||    
T  34911037 atattcatgtaaaagttagttaaactataa--ttgtgtgtcaaaatcaattctagaatcaaaagctacaaatcata 34910964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 434217 - 434296
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagcta 82  Q
    |||||||||||| |||||| ||||||| ||||||||| | ||||||| ||| |||| |||||||||| ||||||||||||    
T  434217 tttgtgtttggatatattcgtgtaaaagtgagttgaaatttaaatttatgtataaaaatcaattctaaaatcaaaagcta 434296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 957618 - 957711
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||||||||||||||| || | ||| |||||||||||| ||| ||| |  |||||||| ||| ||||| ||||| |||||| |||||||||    
T  957618 attcatgtaaaaatgagttaaattttaagtttgtgtgtaaaaatcgattatggaatcaaaaactataaatcttagctacaagtaaaatcaattc 957711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 31305831 - 31305924
Alignment:
Q  8 tgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagt 100  Q
    |||||||| ||||| |||||||| |||||||| | ||||||||| ||||| | |||||||||| ||||||||||| ||| |  |||||||||||    
T  31305831 tgtttggatatattaatgtaaaagtgagttgatcaataaatttgagtgtataaatcaattctagaatcaaaagctccaatttttagcttcaagt 31305924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 34027410 - 34027475
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagct 81  Q
    |||||||||||| | |||||||||  ||||||||| ||||||| |||||||||| |||||||||||    
T  34027410 atattcatgtaagagtgagttgaataataaatttgagtgtaaaaatcaattctagaatcaaaagct 34027475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 4908067 - 4907960
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | | |||||||||| | ||| ||| ||||||||||| ||| ||| | |||| || |||||||| ||||||||||||||||||| ||     
T  4908067 tttgtgtttggataaaatcatgtaaaagtaagt-gaattataaatttgtttgtgaaggtaaattatagaatcaaaaactacaaatcatagcttcaaataa 4907969  T
Q  103 aatcaattc 111  Q
    |||||||||    
T  4907968 aatcaattc 4907960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 6895945 - 6896037
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||||||| ||| || | ||||||||  |||||  || || ||||||| |||||||||||||||||| || ||||| ||||||||||||    
T  6895945 attcatgtaaaagtgaatttatctataaatacgtgtgcgaaaataaattctagaatcaaaagctacaaatcctaacttcaggtagaatcaatt 6896037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 2234602 - 2234493
Alignment:
Q  22 atgtaaaaatgagttgaacta-taaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcag 120  Q
    |||||| | |||||||||| | |||||||| |||| || |||||||||| ||||||||||| ||  |  ||||||||||| |||||||||  | |||||     
T  2234602 atgtaatagtgagttgaacaaataaatttgagtgttaaaatcaattctagaatcaaaagcttcagtttttagcttcaagttgaatcaattttgaaggcaa 2234503  T
Q  121 aatcaattct 130  Q
    ||||||||||    
T  2234502 aatcaattct 2234493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 9505862 - 9505797
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagct 81  Q
    |||||||||||||| || ||||||| ||||||||| || |||| ||||||  || |||||||||||    
T  9505862 atattcatgtaaaagtgtgttgaacaataaatttgagtttaaaaatcaatcatagaatcaaaagct 9505797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 19601457 - 19601510
Alignment:
Q  35 ttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatc 88  Q
    ||||||||||||||| | |||||| |||| || || ||||||||||||||||||    
T  19601457 ttgaactataaatttatttgtaaaaatcagttatagaatcaaaagctacaaatc 19601510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 33496702 - 33496649
Alignment:
Q  33 agttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaa 86  Q
    ||||||| ||||||||||| |||||| || |||||||||||| ||| |||||||    
T  33496702 agttgaattataaatttgtatgtaaaaataaattctataatcgaaaactacaaa 33496649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 947655 - 947594
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagct 81  Q
    |||||||||||| ||||||||| |||||  |||||| |||  |||||||||| |||||||||||    
T  947655 attcatgtaaaagtgagttgaattataa--ttgtgtttaagaatcaattctagaatcaaaagct 947594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 3436882 - 3436969
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    ||||||||||||||| |  ||||| |||||||  | | ||||||| || ||||||||| ||||||| |||| ||||| |||||||||||    
T  3436882 atgtaaaaatgagttcagttataa-tttgtgtacataaatcaattatagaatcaaaagttacaaattatagattcaactagaatcaatt 3436969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 442 - 511
Target Start/End: Complemental strand, 17441257 - 17441186
Alignment:
Q  442 aactcgatttaataattaa--cgttaaacttagttcatgaatcaaatgagttgaccttaaactgaaaattaa 511  Q
    ||||||||||  |||||||  |||| ||||||||||||||| |||||||||||| ||| |  ||||||||||    
T  17441257 aactcgatttggtaattaattcgttgaacttagttcatgaaccaaatgagttgaacttgagttgaaaattaa 17441186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 32927997 - 32927870
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | |||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||    
T  32927997 tttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaattctataatcaaaagctacaaatcctagcttcaagtag 32927898  T
Q  103 aatcaattccggaggcagaatcaattct 130  Q
    |||||| |   |||||| ||||||||||    
T  32927897 aatcaactattgaggcaaaatcaattct 32927870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 15677808 - 15677904
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaaga-tcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  15677808 atattcatgtaacaatgagttgaactataaatttgtgtgtaaaaaatcaattctataatcaaaagctataaatcctagcttcaagtagaatcaattc 15677904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 4662883 - 4663010
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | ||||| | ||||  ||||||||||||| ||||||||||||| |||||||||| || ||||||||||||||| |||||||||||||    
T  4662883 tttgtgtttggatacattcacggaaaagcgagttgaactatacatttgtgtgtaaaaatcaattctagaaacaaaagctacaaatcctagcttcaagtag 4662982  T
Q  103 aatcaattccggaggcagaatcaattct 130  Q
    ||| ||||||||| ||| ||||||||||    
T  4662983 aataaattccggatgcaaaatcaattct 4663010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 35495095 - 35494990
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| |||||||||||||| | |||||||||||| ||||||||||||| | |||||||| |||||||||||||||||| |||||||| ||||    
T  35495095 tttgtgtttggatatattcatgtaaaagtaagttgaactatagatttgtgtgtaaaaaacaattctagaatcaaaagctacaaatcctagcttcatgtag 35494996  T
Q  103 aatcaa 108  Q
    ||||||    
T  35494995 aatcaa 35494990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 13384653 - 13384741
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||| ||||||||||||||||||||||||| || |||||||||| |||||||||||||||||  ||||||||| |||||||||||    
T  13384653 atgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaattttagcttcaaatagaatcaatt 13384741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 110
Target Start/End: Complemental strand, 38868583 - 38868496
Alignment:
Q  23 tgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    ||||||| ||||||||||||||||||||||||| || ||||||| || || ||||||||||||||| |||||||||||||||||||||    
T  38868583 tgtaaaattgagttgaactataaatttgtgtgtgaaaatcaattatagaaccaaaagctacaaatcttagcttcaagtagaatcaatt 38868496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 26100145 - 26100234
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||| |||||||||| ||||||||||||||||| ||||||| || |||||||||||||||||| ||||||||| ||||| ||||||    
T  26100145 atgtaaaagtgagttgaaccataaatttgtgtgtaaaaatcaattatagaatcaaaagctacaaatcctagcttcaaatagaaccaattc 26100234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 32994237 - 32994330
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||||| | | ||| ||||||||||||||| |||| |||||||||| | |||||||||| ||||||||||||||||||||||||||||    
T  32994237 attcatgtaaaagtcatttgcactataaatttgtgtataaaaatcaattctagactcaaaagctagaaatcatagcttcaagtagaatcaattc 32994330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 37684510 - 37684383
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | ||| |||||||| ||||||||| ||||||||| ||  | || ||||||| || |||||||||| ||||||| || ||||||||||    
T  37684510 tttgtgtttggatacatttatgtaaaagtgagttgaattataaatttttgcattaaaatcaattttagaatcaaaagccacaaatcctaacttcaagtag 37684411  T
Q  103 aatcaattccggaggcagaatcaattct 130  Q
    ||||||||| |||| || ||||||||||    
T  37684410 aatcaattctggagacaaaatcaattct 37684383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 44141059 - 44141157
Alignment:
Q  32 gagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaattct 130  Q
    ||||||||||||||| || ||||| || ||||| |||| |||||||| ||||||||| || ||||||||||||||||||  ||||||| ||||||||||    
T  44141059 gagttgaactataaaattatgtgtgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattct 44141157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 16972059 - 16972171
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggagg 117  Q
    |||||||||||| ||| |||||| |||||||||||| |||| |||||||||| ||| |||| ||||||||  ||||||||| || |||||| || | |||    
T  16972059 attcatgtaaaagtgatttgaacaataaatttgtgtttaaaaatcaattctaaaattaaaaactacaaattctagcttcaaatacaatcaactctgaagg 16972158  T
Q  118 cagaatcaattct 130  Q
    || ||||||||||    
T  16972159 caaaatcaattct 16972171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 38335856 - 38335948
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||||||| ||||||  | |||||||||||| ||||| |||||||||| |||||||||| ||||||| ||||||||| | |||||||||    
T  38335856 attcatgtaaaagtgagttagaatataaatttgtgcgtaaaaatcaattctaaaatcaaaagcaacaaatcttagcttcaactggaatcaatt 38335948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 40848122 - 40848026
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaag 99  Q
    |||||||||| | |||||||| |||||||||||| || ||||| ||||||||| || |||||||||| ||||||||| || |||| |||||||||||    
T  40848122 tttgtgtttgaatatattcatataaaaatgagtttaattataagtttgtgtgtgaaaatcaattctaaaatcaaaagatataaattatagcttcaag 40848026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 32736552 - 32736482
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatc 88  Q
    |||||||||||| ||| |||||||||||||||||||||||| || |||| || ||| |||| |||||||||    
T  32736552 attcatgtaaaagtgaattgaactataaatttgtgtgtaaaaattaattttaaaataaaaaactacaaatc 32736482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 6027047 - 6027136
Alignment:
Q  21 catgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||||||||||| |||| ||||||||| | | || |||||||||| |||||||||||||| |   || || |||||||||||||||    
T  6027047 catgtaaaaatgagttaaactgtaaatttgtatatgaaaatcaattctagaatcaaaagctacatactttaactacaagtagaatcaatt 6027136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 7244600 - 7244689
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||||| |  || |||||| ||||| || || |||||||||| |||||||| ||||| ||| ||| ||||||||||||||||||    
T  7244600 atgtaaaaatgaatcaaattataaaattgtgcgtgaaaatcaattctagaatcaaaaactacatatcttagtttcaagtagaatcaattc 7244689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 30099000 - 30098908
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    ||||| |||||||| |||||| |||||||||||| |||  ||| || ||||||| |||| ||||||||||||  ||||||||| || ||||||||    
T  30099000 atatttatgtaaaagtgagttaaactataaatttttgt--aaaaattaattctagaatcgaaagctacaaattctagcttcaaataaaatcaatt 30098908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 10368050 - 10367972
Alignment:
Q  53 tgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaattctt 131  Q
    |||||| || ||||||| ||||||||||| |||||| |||| |||||||||| |||||  ||||||  |||||||||||    
T  10368050 tgtaaaaatgaattctagaatcaaaagctgcaaatcctagcctcaagtagaaccaattgtggaggcgaaatcaattctt 10367972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 5859058 - 5859107
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattc 67  Q
    |||||||||||| |||||||||| ||||| ||||||||||| ||||||||    
T  5859058 attcatgtaaaagtgagttgaaccataaaattgtgtgtaaaaatcaattc 5859107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 46 - 111
Target Start/End: Original strand, 11574267 - 11574332
Alignment:
Q  46 atttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||||||||| |||||||||||| |||||| ||||||||  | |||| ||||| |||||||||    
T  11574267 atttgtgtgtaaaaatcaattctatattcaaaatctacaaatttttgctttaagtaaaatcaattc 11574332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 18355850 - 18355936
Alignment:
Q  23 tgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||  |||||||||| |||||||||||  ||| ||||||| || |||||||||  ||||||| |||||||||  |||||||||||    
T  18355850 tgtaaaagggagttgaactttaaatttgtgt--aaaaatcaattttagaatcaaaagacacaaatcctagcttcaatcagaatcaattc 18355936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 26668632 - 26668530
Alignment:
Q  26 aaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatca 125  Q
    |||| ||||||||||| ||||| ||||||  ||  |||||| || ||| |||| ||||||||  ||| || ||||||||||||||  |||||||||||||    
T  26668632 aaaactgagttgaactttaaatgtgtgtgagaa--tcaattatagaataaaaaactacaaattgtagttttaagtagaatcaattatggaggcagaatca 26668535  T
Q  126 attct 130  Q
    |||||    
T  26668534 attct 26668530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 7644654 - 7644561
Alignment:
Q  23 tgtaaaaatgagttgaactataaatt----tgtgtgtaaagatcaattctataatca-aaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||| |||||||||||||||||||    ||| ||| || ||||| ||||  |||| ||||||||||||| |||||| |||||||||||||||    
T  7644654 tgtaaacatgagttgaactataaattaatttgtatgtcaaaatcaactctaacatcataaagctacaaatcctagctttaagtagaatcaattc 7644561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 161
Target Start/End: Complemental strand, 42455937 - 42455857
Alignment:
Q  83 caaatcatagcttcaagtagaatcaattccggaggcagaatcaattcttattcta---caaccaaacatgtcaaaatcaatt 161  Q
    ||||| ||||| ||||||||||||||||  |||||||||||||| || || || |   ||||||||||||||||||||||||    
T  42455937 caaattatagcatcaagtagaatcaattatggaggcagaatcaa-tcctactcaaaagcaaccaaacatgtcaaaatcaatt 42455857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 7601944 - 7601993
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaatt 66  Q
    ||||||||| ||||||||||||||||| |||||||||| |||| |||||||    
T  7601944 atattcatgaaaaaatgagttgaacta-aaatttgtgtttaaaaatcaatt 7601993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 11572495 - 11572545
Alignment:
Q  60 atcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    ||||||| ||||||||||| ||||||||  |||||||||||| ||||||||    
T  11572495 atcaattttataatcaaaatctacaaattttagcttcaagtataatcaatt 11572545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 32681297 - 32681347
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaatt 66  Q
    ||||| |||||||| ||||||||| ||||||||||||| |||| |||||||    
T  32681297 atattgatgtaaaagtgagttgaattataaatttgtgtttaaaaatcaatt 32681347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 38868832 - 38868766
Alignment:
Q  19 ttcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaa 85  Q
    ||||||||||| ||||| |||||||||||||||| || || ||||||| || ||| |||| ||||||    
T  38868832 ttcatgtaaaagtgagtagaactataaatttgtgcgtgaaaatcaattatagaataaaaaactacaa 38868766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 10378227 - 10378283
Alignment:
Q  51 tgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaa 108  Q
    |||||||| |||||||||| ||| |||| ||||||||||||| || ||||||||||||    
T  10378227 tgtgtaaa-atcaattctaaaattaaaacctacaaatcatagttttaagtagaatcaa 10378283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 32767472 - 32767387
Alignment:
Q  23 tgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaa 108  Q
    ||||||| |||||||||| ||||||||  |||||||  ||| ||||  ||||||||||||  |||| |||||||||| | ||||||    
T  32767472 tgtaaaagtgagttgaacaataaatttaagtgtaaaagtcagttctcgaatcaaaagctatgaatcttagcttcaagcataatcaa 32767387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 35495343 - 35495238
Alignment:
Q  25 taaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatc 124  Q
    ||||| ||| |||||| ||||||||| || |||| ||||||| || ||||| || ||| | |   ||||||||||||||||||||||  |||||| |||     
T  35495343 taaaagtgatttgaacaataaatttgagtataaaaatcaattatagaatcagaatctagatagtgtagcttcaagtagaatcaattctagaggcaaaatt 35495244  T
Q  125 aattct 130  Q
    ||||||    
T  35495243 aattct 35495238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 6213381 - 6213305
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatag 92  Q
    ||||| || |||||||||||| ||  ||| || ||||||| ||  ||| ||||| ||||||||||||||||||||||    
T  6213381 atatttatataaaaatgagtttaatcatagatatgtgtgttaaagtcatttctaaaatcaaaagctacaaatcatag 6213305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 130
Target Start/End: Complemental strand, 32101159 - 32101051
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcaga 121  Q
    |||||||| ||||||||||||||||||||| | | || || |||| || ||| |||| ||||||||  || ||| ||||||||| | ||| | || || |    
T  32101159 atgtaaaagtgagttgaactataaatttgtatatgaaaattaattttaaaattaaaaactacaaattctaactttaagtagaattagttctgaagacata 32101060  T
Q  122 atcaattct 130  Q
    |||||||||    
T  32101059 atcaattct 32101051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 58
Target Start/End: Complemental strand, 38257658 - 38257622
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaa 58  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  38257658 atgtaaaaatgagttgaattataaatttgtgtataaa 38257622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 3e-34; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 4 - 125
Target Start/End: Complemental strand, 1514448 - 1514326
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||||||||    
T  1514448 tttgtgtttggatacattcatgtaaaaatgagttgaacaataaatttgtgtgtaaaaatcaattatataataaaaagctacaaatcctagcttcaagtag 1514349  T
Q  103 aatcaattccggaggcagaatca 125  Q
    ||| ||||  |||| ||||||||    
T  1514348 aataaattttggagacagaatca 1514326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 7524218 - 7524120
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagta 101  Q
    |||||||||||| | ||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||    
T  7524218 tttgtgtttggacacatttatgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaattctataatcaaaagctacaaatcctaacttcaagta 7524120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 28083868 - 28083995
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| |||||||||||||| |||| ||||||  ||||||||||||||| || |||| || |||||||||||||||||  |||||||||||||    
T  28083868 tttgtgtttggatatattcatgtaaaagtgagctgaacttgaaatttgtgtgtaaaaattaattatagaatcaaaagctacaaattctagcttcaagtag 28083967  T
Q  103 aatcaattccggaggcagaatcaattct 130  Q
    |||||||| || || || ||||||||||    
T  28083968 aatcaattacgaagacaaaatcaattct 28083995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 11049340 - 11049247
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||| |||||| ||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||| ||||||||||||||||| ||||    
T  11049340 attcacgtaaaagtgacttgaactataaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctagcttcaagtagaatcgattc 11049247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 111
Target Start/End: Original strand, 7790644 - 7790730
Alignment:
Q  25 taaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||| |||||||||| ||||||||||||||||| ||||||| || |||| ||| |||||||||||| |||||||||||||||||||    
T  7790644 taaaagtgagttgaacaataaatttgtgtgtaaaaatcaattatagaatctaaatctacaaatcataacttcaagtagaatcaattc 7790730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 6021891 - 6021782
Alignment:
Q  21 catgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcag 120  Q
    ||||||||| |||||||||| ||||| ||| ||||||| ||| ||| || |||||||||||||| ||| ||||||||||||||||| ||||  ||||||     
T  6021891 catgtaaaagtgagttgaaccataaacttgagtgtaaaaatctattatagaatcaaaagctacatatcctagcttcaagtagaatcgattctagaggcaa 6021792  T
Q  121 aatcaattct 130  Q
    ||||||||||    
T  6021791 aatcaattct 6021782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 30557607 - 30557505
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | |||||| ||||| ||||||||||||||||||||||||  || |||||||||| |||||||| ||||||||| ||||||||| |||    
T  30557607 tttgtgtttggatacattcatataaaagtgagttgaactataaatttgtgtg--aaaatcaattctagaatcaaaaactacaaatcctagcttcaactag 30557510  T
Q  103 aatca 107  Q
    |||||    
T  30557509 aatca 30557505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 30850394 - 30850483
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatca 107  Q
    |||||||||||| ||||||||||||||||||||| ||| || |||||||||| ||| |||| ||||||||| ||| ||||||||||||||    
T  30850394 attcatgtaaaagtgagttgaactataaatttgtatgttaaaatcaattctaaaattaaaaactacaaatcctagtttcaagtagaatca 30850483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 3016252 - 3016160
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||||||| ||||||||||  ||||||| |||||||| |||||||||| |||||||||||||||||  ||  |||||||||||||||||    
T  3016252 attcatgtaaaagtgagttgaaccgtaaatttatgtgtaaacatcaattctagaatcaaaagctacaaattctaagttcaagtagaatcaatt 3016160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 47321900 - 47322046
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccgga 115  Q
    |||||||||||||| ||| ||||||||||||||||||| | || |||||||||| ||| |||| || |||||  |||||||||||| ||||||||   ||    
T  47321900 atattcatgtaaaagtgaattgaactataaatttgtgtatgaaaatcaattctagaattaaaa-ctgcaaattctagcttcaagtataatcaattataga 47321998  T
Q  116 ggcagaatcaattct--tattctacaaccaaacatgtcaaaatcaatt 161  Q
     ||||||||||||||  |   | ||||| |||||||||||||||||||    
T  47321999 agcagaatcaattctactcgacaacaacaaaacatgtcaaaatcaatt 47322046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 441 - 529
Target Start/End: Complemental strand, 28020692 - 28020602
Alignment:
Q  441 gaactcgatttaataattaa--cgttaaacttagttcatgaatcaaatgagttgaccttaaactgaaaattaaattaattaactaaatgag 529  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||   ||||||||||||    
T  28020692 gaacttgatttaataattaattcgttaaacttagttcatgaatcaaatgagttgaacttgaactgataattaagttctctaactaaatgag 28020602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 24 - 111
Target Start/End: Original strand, 28287337 - 28287424
Alignment:
Q  24 gtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||| | |||||||| ||||||||| |||| || |||||||||| |||||||||||||||||| | ||||||||||||| ||||||    
T  28287337 gtaaaagttagttgaacaataaatttgagtgttaaaatcaattctaaaatcaaaagctacaaatccttgcttcaagtagaaccaattc 28287424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 116
Target Start/End: Original strand, 2099691 - 2099781
Alignment:
Q  26 aaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggag 116  Q
    ||||||||||||| |||||||||| ||||| || ||||||||||||| ||||| |||||||||  |||||||| || ||||||||| ||||    
T  2099691 aaaaatgagttgagctataaatttatgtgtgaaaatcaattctataaccaaaatctacaaatctcagcttcaattacaatcaattctggag 2099781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 3416163 - 3416078
Alignment:
Q  25 taaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||| ||| |||| ||||||||| || ||| ||||| ||||||||    
T  3416163 taaaattgagttaaactataaatttgtgtgtaaaaatcaattctaaaataaaaaactacaaatcttaactttaagtataatcaatt 3416078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 30996124 - 30996039
Alignment:
Q  26 aaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||| ||||||||||||||| |||| ||||| |  ||||||||||| |||| |||| ||||||| |||||||||||||||||||    
T  30996124 aaaaataagttgaactataaatgtgtgggtaaaaactaattctataataaaaaactactaatcataacttcaagtagaatcaattc 30996039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 38797631 - 38797736
Alignment:
Q  25 taaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatc 124  Q
    ||||| ||||||||||||||||||||||||| || |||||||||  | | | ||| ||||||||||| ||||||||| ||||||||  ||||||| || |    
T  38797631 taaaagtgagttgaactataaatttgtgtgtgaaaatcaattcttgatttagaagttacaaatcataacttcaagtataatcaattaaggaggcataacc 38797730  T
Q  125 aattct 130  Q
    ||||||    
T  38797731 aattct 38797736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 34915156 - 34915069
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 105  Q
    |||||||||||| ||||||||| |||||| | |||||| |  |||||||||| ||||||||||||||||  |||||||||| ||||||    
T  34915156 attcatgtaaaagtgagttgaattataaaatggtgtgttagaatcaattctagaatcaaaagctacaaagaatagcttcaactagaat 34915069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 10324937 - 10325043
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcaga 121  Q
    |||||||| |||||  ||| ||||||||| ||||||| ||||||| || ||||||||||||||| |  || ||||||||||| |||||||  |||||| |    
T  10324937 atgtaaaagtgagtataacaataaatttgagtgtaaaaatcaattatagaatcaaaagctacaatttctatcttcaagtagactcaattctagaggcaaa 10325036  T
Q  122 atcaatt 128  Q
    || ||||    
T  10325037 attaatt 10325043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 48549013 - 48549108
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggca 119  Q
    |||||||| |||||||||| ||||||  | || |||| |||||||||| ||||| ||||||||| |  |||||||||||||||||||||  |||||||    
T  48549013 atgtaaaagtgagttgaacaataaat--gagtttaaaaatcaattctagaatcagaagctacaatttctagcttcaagtagaatcaattttggaggca 48549108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 50571363 - 50571281
Alignment:
Q  29 aatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||| ||||||||||| ||||||| | || |||| ||||| ||| |||| ||||||||| || |||||||||||||||||||    
T  50571363 aatgaattgaactataactttgtgtctgaacatcagttctagaataaaaaactacaaatcctaacttcaagtagaatcaattc 50571281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 51500862 - 51500915
Alignment:
Q  51 tgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaa 104  Q
    |||||||| |||||||||| |||||||||||||||||| ||| |||||||||||    
T  51500862 tgtgtaaaaatcaattctagaatcaaaagctacaaatcctaggttcaagtagaa 51500915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 3134727 - 3134819
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    ||||||||||||||| ||  || | ||||||| |||||||| | ||||| ||| |||||||| |||||||| || ||| ||||||||||||||    
T  3134727 attcatgtaaaaatgggtaaaattttaaatttatgtgtaaaaaccaattttatgatcaaaagttacaaatcttatcttaaagtagaatcaatt 3134819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 213532 - 213599
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaa 85  Q
    |||||||||||| |||||||||| | ||||||| || |||| |||||||||| |||||||||| ||||    
T  213532 attcatgtaaaagtgagttgaacaacaaatttgagtttaaaaatcaattctagaatcaaaagccacaa 213599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 47554021 - 47553934
Alignment:
Q  25 taaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaag-ctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||||||||||||||||||| | | |||||| |  ||||||| ||| ||||  ||||||| ||||||||||| ||||||||||||    
T  47554021 taaaaatgagttgaactataaatgtatatgtaaaaactaattctagaataaaaaaactacaaagcatagcttcaaatagaatcaattc 47553934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 461 - 539
Target Start/End: Original strand, 23915659 - 23915737
Alignment:
Q  461 cgttaaacttagttcatgaatcaaatgagttgaccttaaactgaaaattaaattaattaactaaatgagtagaacttga 539  Q
    |||| ||||| ||||||||| |||||||| ||| ||| | ||||||||||| || ||||| ||||||||| ||||||||    
T  23915659 cgttgaacttggttcatgaaccaaatgagctgaactttagctgaaaattaagttcattaaataaatgagttgaacttga 23915737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 3515893 - 3515820
Alignment:
Q  33 agttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatc 106  Q
    |||||||  |||| |||| ||||||| |||||||||| ||| ||||||||||| |  |||||||||||||||||    
T  3515893 agttgaatgataattttgagtgtaaaaatcaattctagaatgaaaagctacaatttctagcttcaagtagaatc 3515820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 39 - 128
Target Start/End: Original strand, 15986237 - 15986326
Alignment:
Q  39 actataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaatt 128  Q
    ||||||||||||||||| || |||||||||| ||| |||| ||  ||||| ||| ||||| || ||||||||| ||||||| ||| ||||    
T  15986237 actataaatttgtgtgtgaatatcaattctagaataaaaaacttgaaatcctagtttcaactataatcaattctggaggcaaaattaatt 15986326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 27849230 - 27849145
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaa-tttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    ||||||||||||   ||||||||| | || ||||| |||||| ||||||||||  ||||||||||||| ||| |||||||||||||    
T  27849230 attcatgtaaaagaaagttgaacttttaagtttgtttgtaaaaatcaattctagtatcaaaagctacacatcgtagcttcaagtag 27849145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 40662991 - 40663061
Alignment:
Q  33 agttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 105  Q
    ||||||| ||||||||||||||| ||  ||||||||  |||||||||||||||||  |||||| |||||||||    
T  40662991 agttgaattataaatttgtgtgttaa--tcaattcttgaatcaaaagctacaaatactagctttaagtagaat 40663061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 44801677 - 44801592
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagta 101  Q
    |||||||||||||| ||||||||  |||||||||| | ||||| || |||| || ||| |||| ||||||||| || |||||||||    
T  44801677 atattcatgtaaaagtgagttgagatataaatttgcgcgtaaaaattaattttagaataaaaaactacaaatcctaacttcaagta 44801592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 461 - 529
Target Start/End: Original strand, 45581070 - 45581138
Alignment:
Q  461 cgttaaacttagttcatgaatcaaatgagttgaccttaaactgaaaattaaattaattaactaaatgag 529  Q
    |||| ||||| ||||||||| |||||||||||| ||| | | ||||||||| || ||||||||||||||    
T  45581070 cgttgaacttggttcatgaaccaaatgagttgaacttgagcggaaaattaagttcattaactaaatgag 45581138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 27500374 - 27500335
Alignment:
Q  19 ttcatgtaaaaatgagttgaactataaatttgtgtgtaaa 58  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  27500374 ttcatgtaaaaatgagttgaacaataaatttgagtgtaaa 27500335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 8382049 - 8381963
Alignment:
Q  25 taaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||| |||||||||| ||||| |||  |||||| |||||||||| ||  | | ||||||| |  ||||||||||||||||||||||    
T  8382049 taaaagtgagttgaacaataaacttgaatgtaaaaatcaattctagaactagaggctacaatttctagcttcaagtagaatcaattc 8381963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 34387710 - 34387780
Alignment:
Q  40 ctataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||||||||||| || ||||||| || ||||||||||| ||| ||  | ||||||||| ||||||||    
T  34387710 ctataaatttgtgtgtgaaaatcaattatagaatcaaaagctgcaattcccaacttcaagtaaaatcaatt 34387780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 36780153 - 36780199
Alignment:
Q  60 atcaattctataatcaaaagctac-aaatcatagcttcaagtagaat 105  Q
    |||||||||||||||||||||||| ||||| || |||||||||||||    
T  36780153 atcaattctataatcaaaagctacaaaatcctaacttcaagtagaat 36780199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 467 - 541
Target Start/End: Original strand, 40159698 - 40159772
Alignment:
Q  467 acttagttcatgaatcaaatgagttgaccttaaactgaaaattaaattaattaactaaatgagtagaacttgaac 541  Q
    |||| ||||||||||||||||||| || ||| |  |||||||||| ||  |||| ||||||||| ||||||||||    
T  40159698 acttggttcatgaatcaaatgagtcgaacttgagttgaaaattaagttcgttaaataaatgagttgaacttgaac 40159772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 3909951 - 3909870
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaag 99  Q
    |||| ||||||  |||||| || ||| ||||||||||| || |||||||||||||| |||| ||||| ||| || |||||||    
T  3909951 attcgtgtaaacgtgagttaaagtatgaatttgtgtgtgaaaatcaattctataatgaaaatctacatatcctaacttcaag 3909870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 11817316 - 11817404
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||| | |||||||||||||||||||||  ||| ||||||| || ||||||  ||| |||||| | |||| ||||||| |||||||    
T  11817316 atgtaaaagttagttgaactataaatttgtgt-aaaaaatcaattttaaaatcaatggctgcaaatctttgctttaagtagattcaattc 11817404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 26373539 - 26373603
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaa 85  Q
    |||||||||||| |||| |||| | |||||||||||   || |||||||||| |||||||||||||||    
T  26373539 attcatgtaaaagtgagatgaattttaaatttgtgt---aaaatcaattctagaatcaaaagctacaa 26373603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 32370011 - 32370112
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | ||||||||||||   |||| || |||||||||||||||||| |  ||||||| ||| ||||  |||||||  || ||||||||||    
T  32370011 tttgtgtttggatacattcatgtaaaagcaagttcaattataaatttgtgtgtaaaaaataattctagaataaaaaattacaaattctaacttcaagtag 32370110  T
Q  103 aa 104  Q
    ||    
T  32370111 aa 32370112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 34721839 - 34721916
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaag 99  Q
    |||||||| | ||| ||||||||||||||||||| || ||||||| || ||| |||| | ||||||| || |||||||    
T  34721839 atgtaaaagtaagtcgaactataaatttgtgtgtgaaaatcaattatagaataaaaaacaacaaatcctaacttcaag 34721916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 39395975 - 39395918
Alignment:
Q  21 catgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaa 78  Q
    ||||||||||||||| |||| ||||||||| ||||||| || ||||||| ||| ||||    
T  39395975 catgtaaaaatgagtcgaacaataaatttgagtgtaaaaattaattctagaataaaaa 39395918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 2555992 - 2555940
Alignment:
Q  17 tattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattcta 69  Q
    ||||||||||||| ||||||||| ||||||||||| ||| |  ||||||||||    
T  2555992 tattcatgtaaaagtgagttgaattataaatttgtatgttagaatcaattcta 2555940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 14334058 - 14334122
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagcta 82  Q
    ||||| |||| | |||||| |||||||||||||||| | || ||||||| |||| ||||||||||    
T  14334058 attcacgtaagagtgagtttaactataaatttgtgtatgaaaatcaattatatattcaaaagcta 14334122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 47555955 - 47555864
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    ||||||||| || | ||||||||||||||| ||| ||| || |  ||||||| ||| |||| |||||||| |||| ||||| |||||||||||    
T  47555955 attcatgtagaattaagttgaactataaatgtgt-tgtgaaaactaattctaaaataaaaaactacaaattatagtttcaaatagaatcaatt 47555864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 32818352 - 32818477
Alignment:
Q  6 tgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaa 104  Q
    |||||||||| | |||||||||||| | |||||||||||||||||||||| ||| |||||||||| |||||||||||||||||  ||||||||| |||||    
T  32818352 tgtgtttggatacattcatgtaaaagttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaa 32818451  T
Q  105 tcaattccggaggcagaatcaattct 130  Q
    ||||||| ||||||| ||||||||||    
T  32818452 tcaattctggaggcaaaatcaattct 32818477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 21691192 - 21691300
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| |||||||||||||| || |||||||||||||||||||||| || |||||||||| || ||||||||||||||| ||| ||||||| |    
T  21691192 tttgtgtttggatatattcatgtaaaagtgtgttgaactataaatttgtgtgtgaaaatcaattctacaaccaaaagctacaaatcttagtttcaagttg 21691291  T
Q  103 aatcaattc 111  Q
    |||||||||    
T  21691292 aatcaattc 21691300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 30357582 - 30357509
Alignment:
Q  38 aactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  30357582 aactataaatttgtgtgtaaaaatcaattatataatcaaaagctacaaatcacagcttcaagtagaatcaattc 30357509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 8604617 - 8604709
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||||||| ||  || |||||||||||||||||| || |||||||||| |||| ||||||||||||| |||||||||||||||||||||    
T  8604617 attcatgtaaaagtgcattcaactataaatttgtgtgtgaaaatcaattctagaatcgaaagctacaaatcttagcttcaagtagaatcaatt 8604709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 35065168 - 35065041
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | |||||||||||| ||||| ||  |||||||||||||||||| |||||||||| |||||||||  ||||||  ||||||||||||     
T  35065168 tttgtgtttggatacattcatgtaaaagtgagtggagatataaatttgtgtgtaaaaatcaattctagaatcaaaagtcacaaatactagcttcaagtaa 35065069  T
Q  103 aatcaattccggaggcagaatcaattct 130  Q
    ||||||||   |||||| ||||||||||    
T  35065068 aatcaattattgaggcaaaatcaattct 35065041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 16552045 - 16551940
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggagg 117  Q
    |||||||||||| ||||||||||||||||||||||||  || |||||||||| ||  |||| ||||||||| |||||||||| |||||| || |  ||||    
T  16552045 attcatgtaaaagtgagttgaactataaatttgtgtg--aaaatcaattctagaactaaaaactacaaatcctagcttcaaggagaatccatcctagagg 16551948  T
Q  118 cagaatca 125  Q
    ||||||||    
T  16551947 cagaatca 16551940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 26617550 - 26617446
Alignment:
Q  26 aaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatca 125  Q
    |||| ||||||||| ||||||||| | | |||| ||||||| ||||||||||||||||| ||  |||||||||||||||||| ||  ||||||| |||||    
T  26617550 aaaactgagttgaattataaatttatctataaaaatcaattttataatcaaaagctacagattctagcttcaagtagaatcatttttggaggcaaaatca 26617451  T
Q  126 attct 130  Q
    |||||    
T  26617450 attct 26617446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 50061637 - 50061735
Alignment:
Q  32 gagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaattct 130  Q
    ||||||||| ||||| || ||||| || ||||| |||| |||||||| ||||||||| || ||||||||||||||||||  ||||||| ||||||||||    
T  50061637 gagttgaaccataaaattatgtgtgaaaatcaactctagaatcaaaaactacaaatcctaacttcaagtagaatcaattttggaggcaaaatcaattct 50061735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 55927765 - 55927875
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggagg 117  Q
    |||||||||||| ||| |||||| ||||||||| |||| | ||||||||||| ||||| ||||||||| |  |||| |||||| |||||||||| | |||    
T  55927765 attcatgtaaaagtgacttgaacaataaatttgagtgtgacgatcaattctagaatcagaagctacaatttttagcctcaagtggaatcaattctgaagg 55927864  T
Q  118 cagaatcaatt 128  Q
    || ||||||||    
T  55927865 caaaatcaatt 55927875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 1616480 - 1616388
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||||||||||||||||| ||||  |||||||    |||||||||| |||||||||||||||||  |||||| |||||||||||||||    
T  1616480 attcatgtaaaaatgagttgaactttaaacatgtgtgtgggaatcaattctagaatcaaaagctacaaattgtagctt-aagtagaatcaattc 1616388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 14596782 - 14596686
Alignment:
Q  17 tattcatgtaaaaatgagttgaactataaatttgtgtgt--aaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||| ||||| ||| ||||||||||||||| ||| |  ||| |||||||||| |||||||| || |||| ||||||||||||||||||||||||    
T  14596782 tattcatataaaagtgaattgaactataaatttttgtatctaaaaatcaattctagaatcaaaaactgcaaaacatagcttcaagtagaatcaattc 14596686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 161
Target Start/End: Complemental strand, 39386725 - 39386578
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccgga 115  Q
    |||||||||||||| ||||||||||| ||||| ||||||| || ||||||| || ||| ||| | || ||||  |||||| ||||||||||||||   ||    
T  39386725 atattcatgtaaaagtgagttgaactttaaatatgtgtgtgaaaatcaattatagaattaaatgttataaattttagctttaagtagaatcaattttaga 39386626  T
Q  116 ggcagaatcaattct--tattctacaaccaaacatgtcaaaatcaatt 161  Q
    | |||||||||||||  |  || |||||||||||| ||| ||||||||    
T  39386625 gacagaatcaattctacttgtcaacaaccaaacatatcataatcaatt 39386578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 9134681 - 9134589
Alignment:
Q  35 ttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaattc 129  Q
    |||| ||||||||||||||| |||  ||||||||| |||||||||||||||||  ||||||||||||| |||||||| ||| | | |||||||||    
T  9134681 ttgagctataaatttgtgtgaaaa--tcaattctaaaatcaaaagctacaaattttagcttcaagtaggatcaattctggaagtaaaatcaattc 9134589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 31012737 - 31012827
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgt-aaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||||||||||||||||||| | ||||| ||| |||||||||| ||| |||| ||||||||| ||| ||  ||||||||||||||    
T  31012737 atgtaaaaatgagttgaactataaatatatgtgtgaaaaatcaattctaaaattaaaaactacaaatcctagttttgagtagaatcaattc 31012827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 49138771 - 49138845
Alignment:
Q  31 tgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 105  Q
    |||||||||||||||  |||||| |||| ||||||| || ||||||||| |||||||| ||||||||||||||||    
T  49138771 tgagttgaactataagcttgtgtataaaaatcaattttagaatcaaaagttacaaatcctagcttcaagtagaat 49138845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 30357709 - 30357644
Alignment:
Q  46 atttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||| |||||||| || |||| ||||||||||||||||| ||||||||||||| ||||||||||||    
T  30357709 atttatgtgtaaaaataaattatataatcaaaagctacagatcatagcttcaattagaatcaattc 30357644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 42971906 - 42971975
Alignment:
Q  27 aaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttc 96  Q
    ||||| ||||||||||||||||||| |||||| |||||||||| || ||||||||| |||| ||||||||    
T  42971906 aaaattagttgaactataaatttgtatgtaaaaatcaattctaaaagcaaaagctataaattatagcttc 42971975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 38 - 130
Target Start/End: Original strand, 55186979 - 55187069
Alignment:
Q  38 aactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaattct 130  Q
    |||||||||| |||||| |||  ||||||||||||| ||||| |||||||| || ||||||||||||||||||| | ||| ||||| ||||||    
T  55186979 aactataaatatgtgtgaaaa--tcaattctataattaaaagttacaaatcctaacttcaagtagaatcaattctgaaggtagaattaattct 55187069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 9064317 - 9064229
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||| ||||||||||  |||| ||| |||| || |||||||||| |||||||| ||||||||  ||| |||||||||||||||||    
T  9064317 atgtaaaagtgagttgaaccgtaaacttgagtgtgaaaatcaattctagaatcaaaaactacaaattctagtttcaagtagaatcaatt 9064229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 53713541 - 53713649
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | |||||||||||| |||||||||||||| || | | |||  |  |||||| || |||||||||||||||||| ||||||||||||     
T  53713541 tttgtgtttggacacattcatgtaaaagtgagttgaactatatatatttatgtggaagtcaattatagaatcaaaagctacaaatcgtagcttcaagtaa 53713640  T
Q  103 aatcaattc 111  Q
    ||| |||||    
T  53713641 aattaattc 53713649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 33844084 - 33843987
Alignment:
Q  4 tttgtgtttgga---atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaa 98  Q
    ||||||||||||   |||||||||||||||| |||||||| ||||||||| |||| || ||||||| || ||||||||||| ||| |  |||||||||    
T  33844084 tttgtgtttggagagatattcatgtaaaaataagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaatttctagcttcaa 33843987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 30 - 128
Target Start/End: Original strand, 20712821 - 20712919
Alignment:
Q  30 atgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaatt 128  Q
    ||||| ||||||| ||| |||||||| || |||||||||  ||| |||| ||||||||  |||||||||||||||||  ||| ||||||| ||||||||    
T  20712821 atgagctgaactacaaaattgtgtgtgaaaatcaattcttcaataaaaaactacaaattttagcttcaagtagaatcgtttcgggaggcaaaatcaatt 20712919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 39733620 - 39733742
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | ||| ||| ||||| |||||||||| ||||| ||||||  ||  ||||||||| |||||||||||||||||  || | ||||||||    
T  39733620 tttgtgtttggatacatttatgaaaaaaggagttgaactttaaatgtgtgtgataa--tcaattctacaatcaaaagctacaaattgtaac-tcaagtag 39733716  T
Q  103 aatcaattccggaggcagaatcaatt 128  Q
    ||||||||  ||||||||||| ||||    
T  39733717 aatcaattatggaggcagaataaatt 39733742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 45011964 - 45011894
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatc 88  Q
    |||||| ||||| |||||  || ||||||||||||||| || |||||||||| ||||||||||||||||||    
T  45011964 attcatataaaagtgagtaaaattataaatttgtgtgtgaaaatcaattctagaatcaaaagctacaaatc 45011894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 30889865 - 30889765
Alignment:
Q  30 atgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaattc 129  Q
    ||||||| ||||||||||| | || |||| |||||||||| ||||||||  |||||||| ||  | ||||||||||||||||  ||| || |||||||||    
T  30889865 atgagttaaactataaattggagtataaaaatcaattctacaatcaaaatttacaaatcttaattgcaagtagaatcaattctagagacaaaatcaattc 30889766  T
Q  130 t 130  Q
    |    
T  30889765 t 30889765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 33456457 - 33456352
Alignment:
Q  23 tgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaa 122  Q
    ||||||| ||| |||||||||| |||| |||| |||  |||||| || |||||||||||||||||||||| || || |||||| |||||  ||| | |||    
T  33456457 tgtaaaagtgaattgaactatagatttatgtgaaaa--tcaattatagaatcaaaagctacaaatcatagttttaaatagaataaattctagagacggaa 33456360  T
Q  123 tcaattct 130  Q
    ||||||||    
T  33456359 tcaattct 33456352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 4243473 - 4243414
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagct 81  Q
    |||||||| ||||| |||| ||||||||| ||||||| |||||||||| |||||||||||    
T  4243473 atgtaaaagtgagtagaacaataaatttgagtgtaaaaatcaattctagaatcaaaagct 4243414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 10185280 - 10185221
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagct 81  Q
    |||||||| |||||| ||| ||||||||| ||||||||||||||| || |||||||||||    
T  10185280 atgtaaaagtgagttaaacaataaatttgagtgtaaagatcaattttagaatcaaaagct 10185221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 20718690 - 20718615
Alignment:
Q  35 ttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    ||||||||||| |||||||  ||| ||||||| |||||| |||||||||||||||||  ||||| || ||||||||    
T  20718690 ttgaactataattttgtgtagaaaaatcaattttataattaaaagctacaaatcataaattcaaataaaatcaatt 20718615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 45694718 - 45694643
Alignment:
Q  5 ttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaag 79  Q
    ||||||||||| | ||||||||||||||||||| |||||||||| ||||||| |  |||||||||| ||| |||||    
T  45694718 ttgtgtttggatacattcatgtaaaaatgagttcaactataaatgtgtgtgttagaatcaattctagaattaaaag 45694643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 52965854 - 52965937
Alignment:
Q  23 tgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatc 106  Q
    ||||||| ||||||||| ||||||||| ||||| |  ||||||| || |||||||||||| ||||  || ||||||||||||||    
T  52965854 tgtaaaagtgagttgaattataaatttatgtgttagaatcaattttagaatcaaaagctataaatagtaacttcaagtagaatc 52965937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 11271587 - 11271641
Alignment:
Q  73 tcaaaagctacaaatcatagcttcaag-tagaatcaattccggaggcagaatcaa 126  Q
    |||||||||||||||| |||||||||| |||||||||||| ||||||| ||||||    
T  11271587 tcaaaagctacaaatcctagcttcaagttagaatcaattctggaggcaaaatcaa 11271641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 34 - 130
Target Start/End: Original strand, 2206354 - 2206451
Alignment:
Q  34 gttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaag-tagaatcaattccggaggcagaatcaattct 130  Q
    ||||||| ||||||||| ||| ||| |||||| ||| ||||||||||| ||| |  |||||||||| |||||||||||  ||||| | ||||||||||    
T  2206354 gttgaacgataaatttgagtgcaaaaatcaatcctagaatcaaaagctccaatttttagcttcaagctagaatcaattttggaggaaaaatcaattct 2206451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 16644033 - 16643981
Alignment:
Q  53 tgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 105  Q
    |||||| |||||||||| |||||||| ||| |||| |||||||||||||||||    
T  16644033 tgtaaaaatcaattctagaatcaaaatctataaattatagcttcaagtagaat 16643981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 442 - 539
Target Start/End: Original strand, 19455199 - 19455298
Alignment:
Q  442 aactcgatttaataattaa--cgttaaacttagttcatgaatcaaatgagttgaccttaaactgaaaattaaattaattaactaaatgagtagaacttga 539  Q
    |||||||||| | ||||||  |||| ||||| |||||||||||||||||| ||| ||| |  |||||||||| ||  ||| |||||||||| ||||||||    
T  19455199 aactcgatttgacaattaattcgttgaacttggttcatgaatcaaatgagctgaacttgagttgaaaattaagtttgttatctaaatgagttgaacttga 19455298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 22683950 - 22683843
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaag-tagaatcaattccggaggcag 120  Q
    ||||||||  ||||||||| ||||||||   |||||| ||||  | || | |||||||||||| |||||||||||||| || ||| ||||| |||||||     
T  22683950 atgtaaaagcgagttgaacaataaatttcaatgtaaaaatcacgtttagactcaaaagctacagatcatagcttcaagttataattaattctggaggcaa 22683851  T
Q  121 aatcaatt 128  Q
    ||||||||    
T  22683850 aatcaatt 22683843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 25927363 - 25927288
Alignment:
Q  53 tgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaatt 128  Q
    |||||| |||||||||  ||||| |||||||||||| || || ||| |||||||||||  ||||||| ||||||||    
T  25927363 tgtaaaaatcaattctgaaatcataagctacaaatcttaactccaaatagaatcaattatggaggcataatcaatt 25927288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 29904324 - 29904229
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||| |||| | ||| |||||| ||||||||| ||||||| |||| ||||| ||| | ||||||||| |  | |||| |||||||||||||||    
T  29904324 atattcaagtaatagtgaattgaacaataaatttgagtgtaaacatcagttctagaattagaagctacaatttcttgctttaagtagaatcaattc 29904229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 33347167 - 33347258
Alignment:
Q  20 tcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||| ||| |||||||||| ||||||||| ||| || |||| |  ||| ||||  |||||||| || ||||||||||||| |||||    
T  33347167 tcatgtaaaagtgaattgaactatatatttgtgtgcaaaaattaattatcgaataaaaaattacaaatcctaccttcaagtagaattaattc 33347258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 2326806 - 2326951
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggagg 117  Q
    |||||||||||  ||||||||||| ||||| ||||| | |  || ||||||| ||| ||||| |||||||  ||| ||| | |||||||||||| || |     
T  2326806 attcatgtaaaggtgagttgaactttaaatatgtgtttgagaattaattctagaattaaaagttacaaattctagtttcgaatagaatcaattctggtga 2326905  T
Q  118 cagaatcaattcttattcta--caaccaaacatgtcaaaatcaatt 161  Q
    ||||| ||||||||  |  |  ||||||||||||||| ||||||||    
T  2326906 cagaaacaattcttcatgaaatcaaccaaacatgtcataatcaatt 2326951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 46344832 - 46344936
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcaga 121  Q
    |||||||| ||||| ||||| ||||||||||| |||| |||| ||| | |||||||||||  ||||  || ||||||||||||| ||||  ||||||| |    
T  46344832 atgtaaaagtgagtcgaactttaaatttgtgt-taaaaatcacttccagaatcaaaagctggaaattctaacttcaagtagaat-aattatggaggcaaa 46344929  T
Q  122 atcaatt 128  Q
    |||||||    
T  46344930 atcaatt 46344936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 15846897 - 15846817
Alignment:
Q  27 aaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    ||||||||||||| ||||||||| |||||||| || ||| | | ||||||||| |||||||  ||   ||||||||||||||||    
T  15846897 aaaatgagttgaattataaatttatgtgtaaaaattaatccgagaatcaaaagatacaaatttta---tcaagtagaatcaatt 15846817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 18597088 - 18597019
Alignment:
Q  60 atcaattctataatcaaaagctacaaatcatagcttcaag-tagaatcaattccggaggcagaatcaatt 128  Q
    ||||||| || ||||||||| | ||||| ||||||||||| |||||||||||| ||||| | ||||||||    
T  18597088 atcaattatagaatcaaaaggttcaaattatagcttcaagttagaatcaattctggaggtaaaatcaatt 18597019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 8283419 - 8283471
Alignment:
Q  77 aagctacaaatcatagcttcaag-tagaatcaattccggaggcagaatcaatt 128  Q
    ||||||||||||||||||||||| |||||||||| | ||||||| ||| ||||    
T  8283419 aagctacaaatcatagcttcaagttagaatcaatgctggaggcaaaataaatt 8283471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 8330171 - 8330095
Alignment:
Q  53 tgtaaagatcaattctataatcaaaagctacaaatcatagcttcaag-tagaatcaattccggaggcagaatcaatt 128  Q
    |||||| ||||||| || ||||||||||| ||| |  |||||||||| ||||||| |||  ||||||||||||||||    
T  8330171 tgtaaaaatcaattatagaatcaaaagctccaatttctagcttcaagttagaatccattatggaggcagaatcaatt 8330095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 58
Target Start/End: Original strand, 27967426 - 27967458
Alignment:
Q  26 aaaaatgagttgaactataaatttgtgtgtaaa 58  Q
    ||||||||||||||||||||||||||| |||||    
T  27967426 aaaaatgagttgaactataaatttgtgcgtaaa 27967458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 28009572 - 28009656
Alignment:
Q  27 aaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||||||||| ||||||||||| |||||  ||||||| || ||| ||||  ||||| || ||  || |||||||||||||||    
T  28009572 aaaatgagttgaattataaatttgtttgtaataatcaattttagaattaaaaattacaattcttaattttaagtagaatcaattc 28009656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 29779106 - 29779142
Alignment:
Q  75 aaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||||||  ||||||||||||||||||||||    
T  29779106 aaaagctacaaattctagcttcaagtagaatcaattc 29779142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 30473016 - 30472932
Alignment:
Q  26 aaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    ||||| || ||||||||||||| | | ||| || |||||||||| |||||||| ||||||||  || ||| ||||| ||||||||    
T  30473016 aaaaaagaattgaactataaatatatatgtgaaaatcaattctaaaatcaaaaactacaaattctaacttgaagtaaaatcaatt 30472932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 47596300 - 47596356
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaa 78  Q
    ||||||||||| | | ||| ||||||||| ||||||| ||||||| |||||||||||    
T  47596300 atgtaaaaatgggctaaacaataaatttgagtgtaaaaatcaattttataatcaaaa 47596356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 18851078 - 18851169
Alignment:
Q  19 ttcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    ||||||||||| |||||| |||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18851078 ttcatgtaaaagtgagtttaactataaatatgtgtgtgaaaatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 18851169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 9818825 - 9818717
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaaga-tcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggag 116  Q
    |||||| ||||| ||||||||||||||||||||||| |||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||    
T  9818825 attcatataaaagtgagttgaactataaatttgtgtttaaaaaatcaattctagaatcaaaagctacaaatcatagcttcaagtagaatcaattatggag 9818726  T
Q  117 gcagaatca 125  Q
    ||| |||||    
T  9818725 gcaaaatca 9818717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 38845549 - 38845441
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaa-tgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagta 101  Q
    |||||||||||| ||||||||||||||| |||||| ||||||| |||||||||| || |||||||||| |||||||| ||||||||| ||||||||||||    
T  38845549 tttgtgtttggatatattcatgtaaaaagtgagtttaactatatatttgtgtgtgaaaatcaattctagaatcaaaaactacaaatcttagcttcaagta 38845450  T
Q  102 gaatcaatt 110  Q
    |||||||||    
T  38845449 gaatcaatt 38845441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 31906349 - 31906257
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||||||| ||||||||||||||||||| | || ||| ||||||| |||||||||||| ||||||||||||||||||||| ||||||||    
T  31906349 attcatgtaaaagtgagttgaactataaatttatatgaaaatatcaattatataatcaaaagttacaaatcatagcttcaagtaaaatcaatt 31906257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 42858198 - 42858105
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||||| ||||||||||||||||||||||||| || ||||||| || ||| ||||||| |||||| || ||||||||| |||||||||    
T  42858198 attcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaattatagaattaaaagctccaaatcctaacttcaagtaaaatcaattc 42858105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 6951300 - 6951392
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||||||| ||| ||||| ||||||||| |||||| | ||||||| || |||||||||||||||||| || ||||||||||||||||||    
T  6951300 attcatgtaaaagtgaattgaattataaatttatgtgtacaaatcaattatagaatcaaaagctacaaatcctaacttcaagtagaatcaatt 6951392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 18637365 - 18637281
Alignment:
Q  25 taaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||| |||||||||||||||||  ||||||||| |||||||||| |||||||||||||  ||| ||||||||||| ||||||||||    
T  18637365 taaaattgagttgaactataaat--gtgtgtaaaaatcaattctagaatcaaaagctacttatcttagcttcaagtggaatcaattc 18637281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 11648170 - 11648080
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||||||| ||||||||| ||||  || |||||| || ||||||| |||||||||||  |||||||| |||||||||||||||||||||    
T  11648170 attcatgtaaaattgagttgaattata--ttcgtgtgtgaaaatcaattttataatcaaaatgtacaaatcttagcttcaagtagaatcaatt 11648080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 24 - 105
Target Start/End: Complemental strand, 15368457 - 15368376
Alignment:
Q  24 gtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 105  Q
    |||||| ||||||||| ||||||||||||||| |  |||||||||||||||||||| ||||| |  ||||||||||||||||    
T  15368457 gtaaaactgagttgaattataaatttgtgtgttagaatcaattctataatcaaaagttacaactagtagcttcaagtagaat 15368376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 22572412 - 22572492
Alignment:
Q  31 tgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||| |||||||||||||| | ||||  ||||||||||||||||||||||||||||  ||||||||| | |||||||||    
T  22572412 tgagttaaactataaatttgtttataaaattcaattctataatcaaaagctacaaatcccagcttcaagaacaatcaattc 22572492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 22 - 109
Target Start/End: Original strand, 22226235 - 22226322
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaat 109  Q
    |||||||| | ||| ||||| ||||||||||||||||  | ||||||| |||||||||||||||||  || |||||||||||||||||    
T  22226235 atgtaaaagttagtcgaactctaaatttgtgtgtaaaagttaattctaaaatcaaaagctacaaatactatcttcaagtagaatcaat 22226322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 23 - 105
Target Start/End: Original strand, 2937582 - 2937664
Alignment:
Q  23 tgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 105  Q
    ||||||||||||| ||| ||||||||||||||| |  |||||||||| ||||||| |||||||||  |||||| |||||||||    
T  2937582 tgtaaaaatgagtagaaatataaatttgtgtgttataatcaattctagaatcaaaggctacaaatagtagctttaagtagaat 2937664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 39097320 - 39097243
Alignment:
Q  34 gttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||| ||||||| ||||| || ||||||| |||||| ||||| |||||||  ||||||||||||||||||||||    
T  39097320 gttgaactttaaatttatgtgtgaaaatcaattatataattaaaagttacaaattttagcttcaagtagaatcaattc 39097243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 28110440 - 28110503
Alignment:
Q  25 taaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatc 88  Q
    ||||| |||||| |||||||||||||||||| || |||||||||| ||||||||| ||||||||    
T  28110440 taaaagtgagttcaactataaatttgtgtgtgaaaatcaattctaaaatcaaaagttacaaatc 28110503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 36640026 - 36639915
Alignment:
Q  19 ttcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggc 118  Q
    ||||||||||| |||| |||||  |||||||| ||||||| | |||||||| ||| | ||||||||| |   |||||||||||||||| |||  ||||||    
T  36640026 ttcatgtaaaagtgaggtgaacattaaatttgagtgtaaaaaacaattctagaattagaagctacaatttccagcttcaagtagaatctattttggaggc 36639927  T
Q  119 agaatcaattct 130  Q
    | ||||||||||    
T  36639926 aaaatcaattct 36639915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 5468859 - 5468753
Alignment:
Q  23 tgtaaaaatgagttgaactataaatttgtgtgtaaagatc-aattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcaga 121  Q
    ||||||||||||||||||||||||||||||| | || ||| |||| || ||| ||||  || ||||| |||  |||||||||||||| |  |||||||||    
T  5468859 tgtaaaaatgagttgaactataaatttgtgtatgaaaatcaaattataaaattaaaaattataaatcctagtctcaagtagaatcaaatatggaggcaga 5468760  T
Q  122 atcaatt 128  Q
    |||||||    
T  5468759 atcaatt 5468753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 13171760 - 13171866
Alignment:
Q  23 tgtaaaaatgagttgaactataaatttgtgtgt-aaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcaga 121  Q
    ||||||| |||||| |||||||||||| ||| | ||| |||| || || ||||||||  |||||||| |  ||||||||||||||||||  |||||||||    
T  13171760 tgtaaaattgagtttaactataaatttttgtatgaaaaatcatttatagaatcaaaatttacaaatcttttcttcaagtagaatcaattttggaggcaga 13171859  T
Q  122 atcaatt 128  Q
    |||||||    
T  13171860 atcaatt 13171866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 14299401 - 14299328
Alignment:
Q  37 gaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    ||||||||||||| ||||| || | |||||||| ||| |||| ||||||||| || ||||||||||||||||||    
T  14299401 gaactataaatttatgtgtgaaaaccaattctagaataaaaaactacaaatcctaacttcaagtagaatcaatt 14299328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 10898810 - 10898763
Alignment:
Q  19 ttcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaatt 66  Q
    ||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  10898810 ttcatgtaaaagtgagttgaacaataaatttgtgtgtaaaaatcaatt 10898763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 370743 - 370797
Alignment:
Q  33 agttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaat 87  Q
    ||||||| |||||||||||||||| | ||||||| || |||||||||||||||||    
T  370743 agttgaagtataaatttgtgtgtacaaatcaattttaaaatcaaaagctacaaat 370797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 34250363 - 34250458
Alignment:
Q  33 agttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaattct 130  Q
    |||||||| | ||||||||||| |||   ||||| || ||||||||||||||| |  |||| |||||||||||||||||  |||||| ||||||||||    
T  34250363 agttgaacaaaaaatttgtgtgaaaaa--caattgtagaatcaaaagctacaatttctagcatcaagtagaatcaattctagaggcataatcaattct 34250458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 35108327 - 35108246
Alignment:
Q  20 tcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagta 101  Q
    |||||||||  || ||||||||||||||||| ||||||| |||| || || ||||||||| | ||||  |||||||||||||    
T  35108327 tcatgtaaatgtgtgttgaactataaatttgcgtgtaaaaatcagttttaaaatcaaaagttgcaaacaatagcttcaagta 35108246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 38587152 - 38587084
Alignment:
Q  42 ataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||||||||||||| ||||||| || || ||||||||||||||| |||  ||||||| |||||||||    
T  38587152 ataaatttgtgtgtaaaaatcaattataaaa-caaaagctacaaatcttaggctcaagtaaaatcaattc 38587084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 3993900 - 3993860
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaa 58  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  3993900 attcatgtaaaaatgaatcgaactataaatttgtgtgtaaa 3993860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 28031169 - 28031260
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||||||| | |||||| |||||||||||||| ||||  |||||| |||||||||||  || ||||  || |||||| |||||||||||    
T  28031169 attcatgtaaaagtaagttgatctataaatttgtgt-taaaagtcaattatataatcaaaaaatataaattttaacttcaaatagaatcaatt 28031260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 33608595 - 33608500
Alignment:
Q  17 tattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaag-tagaatcaattc 111  Q
    ||||||||||||| ||||||||||||| |||||   |||||| ||| |||||| ||| |||| || ||| |  |||||||||| ||||||||||||    
T  33608595 tattcatgtaaaagtgagttgaactatgaatttaactgtaaaaatccattctagaatgaaaaactccaacttctagcttcaagttagaatcaattc 33608500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 35073440 - 35073499
Alignment:
Q  25 taaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctaca 84  Q
    ||||| |||||| |||| |||||||| |||| || |||||||||||||||| ||||||||    
T  35073440 taaaagtgagttaaactttaaatttgagtgtcaaaatcaattctataatcataagctaca 35073499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 42439618 - 42439725
Alignment:
Q  24 gtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaag-tagaatcaattccggaggcagaa 122  Q
    |||||| |||||||||| ||||| ||  ||||||| ||||  | || | |||||||||||| ||  |||||||||| |||||||||||| ||||| | ||    
T  42439618 gtaaaagtgagttgaacgataaaatttagtgtaaaaatcacgtttagactcaaaagctacagattctagcttcaagttagaatcaattctggaggaaaaa 42439717  T
Q  123 tcaattct 130  Q
    ||||||||    
T  42439718 tcaattct 42439725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 11132804 - 11132873
Alignment:
Q  42 ataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaag-tagaatcaatt 110  Q
    |||| |||| ||||||| |||||||||| ||| ||||||||||| |  |||||||||| |||||||||||    
T  11132804 ataattttgagtgtaaatatcaattctacaataaaaagctacaatttgtagcttcaagttagaatcaatt 11132873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 3970450 - 3970506
Alignment:
Q  73 tcaaaagctacaaatcatagcttca-agtagaatcaattccggaggcagaatcaatt 128  Q
    ||||||||||||| || |||||||| | |||||||||||| ||||||| ||||||||    
T  3970450 tcaaaagctacaattcctagcttcagattagaatcaattctggaggcaaaatcaatt 3970506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 8549916 - 8549976
Alignment:
Q  21 catgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagct 81  Q
    |||||||||  ||||||||| |||||||||||| |||  || |||| ||||||||||||||    
T  8549916 catgtaaaagcgagttgaacaataaatttgtgtataagaataaattttataatcaaaagct 8549976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 15368560 - 15368496
Alignment:
Q  21 catgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaa 85  Q
    ||||||||| ||| |||||| | | ||||| ||||||||||||||| || ||||| |||||||||    
T  15368560 catgtaaaagtgacttgaacaacatatttgagtgtaaagatcaattatagaatcagaagctacaa 15368496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 36290125 - 36290033
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||| ||||||| ||||||||||||||||| ||||| | || ||||| | |  ||||||||   ||||||| || ||||||||| ||||||||    
T  36290125 attcgtgtaaaactgagttgaactataaatatgtgtctgaaaatcaaatatggaatcaaaactaacaaatcttaacttcaagtataatcaatt 36290033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 33019151 - 33019261
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggagg 117  Q
    |||||||||||| ||||||||||||||||||| ||||| || |||||||||| || ||||||||||||||  ||||||||| || |||||||||  ||||    
T  33019151 attcatgtaaaagtgagttgaactataaatttatgtgtgaaaatcaattctaaaaccaaaagctacaaattctagcttcaaatataatcaattctagagg 33019250  T
Q  118 cagaatcaatt 128  Q
    |||||||||||    
T  33019251 cagaatcaatt 33019261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 42741063 - 42740975
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||| ||||||| ||  |||||||| ||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  42741063 atgtaaaagtgagttggacagtaaatttgagtgtaaaaatcaattctagaatcaaaagctacaaatcttagcttcaagtagaatcaatt 42740975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 129
Target Start/End: Complemental strand, 16518883 - 16518758
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | |||||||||||| |||||||||||||||||||||| |||||  |||  | ||||||||||||||||||||| || |||| |||||    
T  16518883 tttgtgtttggatacattcatgtaaaagtgagttgaactataaatttgtgcgtaaaagtcatct-tataatcaaaagctacaaatcctatcttctagtag 16518785  T
Q  103 aatcaattccggaggcagaatcaattc 129  Q
    ||||||||| ||| ||| || ||||||    
T  16518784 aatcaattctggaagcaaaaccaattc 16518758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 42982634 - 42982523
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatc--aattccgga 115  Q
    |||||||||||| ||||||| |  ||||||||||||||||| |||||||||  ||||||||||||||| |  |||||||||||||||||  ||||| |||    
T  42982634 attcatgtaaaagtgagttgtaaaataaatttgtgtgtaaaaatcaattctggaatcaaaagctacaatttctagcttcaagtagaatcaaaattctgga 42982535  T
Q  116 ggcagaatcaat 127  Q
    |||| |||||||    
T  42982534 ggcaaaatcaat 42982523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 22536103 - 22535976
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | ||| ||||||||||||||| |||||||||| |||||| ||| || ||||||| ||||||||||| |||||  ||  |||||||||    
T  22536103 tttgtgtttggatacatttatgtaaaaatgagtttaactataaatatgtgtgcaaaaattaattctaaaatcaaaagcttcaaattctaaattcaagtag 22536004  T
Q  103 aatcaattccggaggcagaatcaattct 130  Q
    |||||||||   ||||| ||||||||||    
T  22536003 aatcaattctaaaggcaaaatcaattct 22535976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 10644686 - 10644581
Alignment:
Q  25 taaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatc 124  Q
    ||||| ||||||||||||||||||| ||| | ||  | ||||||||||| |||| ||||||||| || ||||||||||||| ||||  ||||||||||||    
T  10644686 taaaagtgagttgaactataaatttatgtatgaaagttaattctataatgaaaaactacaaatcttaacttcaagtagaataaattttggaggcagaatc 10644587  T
Q  125 aattct 130  Q
    ||||||    
T  10644586 aattct 10644581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 43501213 - 43501122
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||||| ||||||||| ||||| ||||||| || | |||||||||| |||||||||||||||||| ||| ||||||||||||||||||    
T  43501213 attcatgtaaaactgagttgaattataattttgtgt-taga-atcaattctaaaatcaaaagctacaaatcctagtttcaagtagaatcaattc 43501122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 30503294 - 30503186
Alignment:
Q  23 tgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaa 122  Q
    |||||||||||||| || | ||||||  |||||||| |||||||||  ||||||||||||| |||| | |||||||||||||||||||  ||||||| ||    
T  30503294 tgtaaaaatgagttcaagtttaaattcatgtgtaaaaatcaattcttgaatcaaaagctacgaatcctggcttcaagtagaatcaattttggaggcaaaa 30503195  T
Q  123 tcaattctt 131  Q
    ||| |||||    
T  30503194 tcatttctt 30503186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 11504057 - 11504163
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggagg 117  Q
    |||||||||||| ||||||||||||||| ||||||||| || | ||||||||||||||||| ||||||||| || |||   ||||||||||||  |||||    
T  11504057 attcatgtaaaagtgagttgaactataactttgtgtgtgaa-aacaattctataatcaaaaactacaaatcctaactttcggtagaatcaattttggagg 11504155  T
Q  118 cagaatca 125  Q
     |||||||    
T  11504156 tagaatca 11504163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 2002718 - 2002802
Alignment:
Q  46 atttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaattct 130  Q
    ||||||||||||| ||||||| || ||| |||| ||||||||| ||||||||||||||||||  || ||||||| ||||||||||    
T  2002718 atttgtgtgtaaaaatcaattttagaatgaaaaactacaaatcctagcttcaagtagaatcaggtctggaggcaaaatcaattct 2002802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 13912892 - 13912784
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | | |||||||||||||||||||||  |||||||||||||||| || ||||||| ||| ||||  |||||||  |||||||| ||||    
T  13912892 tttgtgtttggatacaatcatgtaaaaatgagttgaacggtaaatttgtgtgtaaaaattaattctagaataaaaaattacaaattctagcttcatgtag 13912793  T
Q  103 aatcaattc 111  Q
    ||| |||||    
T  13912792 aataaattc 13912784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 44439340 - 44439250
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaag-tagaatcaattc 111  Q
    |||||||| |||||||||| ||||||||| |||| || ||||||| || ||||||||||| |||||  |||||||||| ||||||||||||    
T  44439340 atgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattttagaatcaaaagctccaaattttagcttcaagttagaatcaattc 44439250  T

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Target: chr2; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 33502322 - 33502258
Alignment:
Q  23 tgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaat 87  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||| || ||||||||| |||||||    
T  33502322 tgtaaaagtgagttgaactataaatatgtgtgtaaaaatcaattttagaatcaaaagttacaaat 33502258  T

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Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 5533027 - 5533113
Alignment:
Q  19 ttcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 105  Q
    ||||||||||  ||||||||| ||||||||| |||||  | |||||||  | |||||||||||||||||  ||||||||||||||||    
T  5533027 ttcatgtaaatgtgagttgaattataaatttatgtgtttaaatcaatttaagaatcaaaagctacaaatagtagcttcaagtagaat 5533113  T

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Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 12037150 - 12037058
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||| |||||| ||||||||| |||||||||| | | || ||||||| || |||||||||||||||||  ||| ||||| ||||||||||||    
T  12037150 attcatctaaaaa-gagttgaaccataaatttgtttatgaaaatcaattgtagaatcaaaagctacaaattttagtttcaactagaatcaattc 12037058  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 552
Target Start/End: Complemental strand, 14103367 - 14103254
Alignment:
Q  441 gaactcgatttaataattaac--gttaaacttagttcatgaatcaaatgagttgaccttaaactgaaaattaaattaattaactaaatgagtagaacttg 538  Q
    |||||||| | ||||||||||  ||| ||||| ||||||||  ||||| ||| || ||||||||||||||||| ||  |||| |||||||| |||||||     
T  14103367 gaactcgactcaataattaactcgtttaacttggttcatgagccaaataagtcgaacttaaactgaaaattaagttcgttaattaaatgagcagaactta 14103268  T
Q  539 aacaagatatattt 552  Q
    ||| | ||||||||    
T  14103267 aactatatatattt 14103254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 33502847 - 33502990
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaag-tagaatcaattccggaggcag 120  Q
    ||||||||||||||||||| ||||||||  ||||||  ||||  |||| | |||||| ||  ||||  |||||||||| |||||||||||| ||| |||     
T  33502847 atgtaaaaatgagttgaacaataaattttagtgtaataatcacatctagactcaaaaacttgaaattctagcttcaagttagaatcaattctggatgcaa 33502946  T
Q  121 aatcaattcttattcta---caaccaaacatgtcaaaatcaattt 162  Q
    ||||| || ||| || |   |||||||||||||||||||||||||    
T  33502947 aatcagtt-ttactcgagagcaaccaaacatgtcaaaatcaattt 33502990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 3352162 - 3352074
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||| | |||||||  |||||||||||||| || ||||||| || ||||||||||| ||| ||  | ||||||||| ||||||||    
T  3352162 atgtaaaagtaagttgaaacataaatttgtgtgtgaaaatcaattatagaatcaaaagctgcaattcccaacttcaagtaaaatcaatt 3352074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 8800694 - 8800766
Alignment:
Q  19 ttcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcata 91  Q
    ||||||||||| ||||||||| ||||||||||| | | || ||||||| || | ||||||| |||||||||||    
T  8800694 ttcatgtaaaagtgagttgaattataaatttgtatattaaaatcaattatagattcaaaagttacaaatcata 8800766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 31453460 - 31453381
Alignment:
Q  31 tgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||| |||| |||||||||| || || |||||||  | |||||||||  ||||||  |||||||||||||||||||||    
T  31453460 tgagttaaactctaaatttgtgcgtgaaaatcaatttcagaatcaaaaggaacaaattttagcttcaagtagaatcaatt 31453381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 4779197 - 4779111
Alignment:
Q  19 ttcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 105  Q
    ||||||||||  ||| |||| | ||||||||| || || | || ||||||| ||| ||||||||||||| |||| ||||||||||||    
T  4779197 ttcatgtaaatgtgaattgagcaataaatttgagtttataaataaattctaaaataaaaagctacaaattatagtttcaagtagaat 4779111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 11759871 - 11759913
Alignment:
Q  35 ttgaactataaatttgtgtgtaaagatcaattctataatcaaa 77  Q
    ||||||||||||||||| |||||| |||||||||| |||||||    
T  11759871 ttgaactataaatttgtatgtaaaaatcaattctagaatcaaa 11759913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 33961978 - 33962036
Alignment:
Q  20 tcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaa 78  Q
    |||||||||||||| |||||| ||||||||| || |||| ||||||| || ||||||||    
T  33961978 tcatgtaaaaatgacttgaacaataaatttgagtctaaaaatcaattatagaatcaaaa 33962036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 530
Target Start/End: Complemental strand, 2578145 - 2578088
Alignment:
Q  473 ttcatgaatcaaatgagttgaccttaaactgaaaattaaattaattaactaaatgagt 530  Q
    ||||||||||||||||| ||| ||| | ||||||||||||||  |||| |||||||||    
T  2578145 ttcatgaatcaaatgagctgaacttgagctgaaaattaaattcgttaaataaatgagt 2578088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 21234576 - 21234613
Alignment:
Q  74 caaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  21234576 caaaagctacaaattctagcttcaagtagaatcaattc 21234613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 33047562 - 33047647
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatc 88  Q
    |||||||||||| | ||| |||||||| |||| |||||  ||||||| | ||| || |||| ||||| ||||||||||||||||||    
T  33047562 tttgtgtttggatacatttatgtaaaagtgaggtgaaccgtaaatttttctgtgaaaatcatttctaaaatcaaaagctacaaatc 33047647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 680344 - 680384
Alignment:
Q  90 tagcttcaagtagaatcaattccggaggcagaatcaattct 130  Q
    |||||||||||||||||||||| ||||||| ||||| ||||    
T  680344 tagcttcaagtagaatcaattctggaggcaaaatcagttct 680384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 3476439 - 3476535
Alignment:
Q  33 agttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaag-tagaatcaattccggaggcagaatcaatt 128  Q
    |||||||| ||| |||||  |||||| || ||||||| |||||||||||  || |  |||||| ||| |||||||||||| ||||||| ||||||||    
T  3476439 agttgaacaatacatttgaatgtaaaaataaattctagaatcaaaagctctaatttttagctttaagttagaatcaattctggaggcaaaatcaatt 3476535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 31080208 - 31080156
Alignment:
Q  39 actataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcata 91  Q
    ||||||||||||||||||||   ||||| |||||||||||| || ||||||||    
T  31080208 actataaatttgtgtgtaaaacacaattttataatcaaaagatataaatcata 31080156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 31934 - 31771
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttg---aactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaag 99  Q
    |||||||||||| | ||| |||||||| |||||||   |||||||||| ||| ||| || |||||||| |||||||||||||||||||| ||||||||||    
T  31934 tttgtgtttggatacatttatgtaaaagtgagttgtttaactataaatatgtatgtgaaaatcaattcaataatcaaaagctacaaatcctagcttcaag 31835  T
Q  100 tagaatcaattccggaggcagaatcaattcttatt---ctacaaccaaacatgtcaaaatcaatt 161  Q
    || ||||||||  |||||||||||||||| ||| |   | |||||||||||||||| ||||||||    
T  31834 tataatcaattttggaggcagaatcaatt-ttactcgacaacaaccaaacatgtcagaatcaatt 31771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 31708219 - 31708317
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagta 101  Q
    |||||||||||| | |||||||||||| ||||||||| ||||||||||||||| |  |||||||||| |||||||||||||||||  ||||||| ||||    
T  31708219 tttgtgtttggatacattcatgtaaaagtgagttgaattataaatttgtgtgttagaatcaattctagaatcaaaagctacaaatagtagcttcgagta 31708317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 52364137 - 52364048
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||| ||||||||||| ||||||| ||| | || ||||||| || |||||||||||| ||||||||||||||||||||| ||||||    
T  52364137 atgtaaaagtgagttgaactgtaaatttatgtttgaaaatcaattatagaatcaaaagctataaatcatagcttcaagtagaaacaattc 52364048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 4526218 - 4526130
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||| || ||||||||||||||||||||||||| ||||||| || ||||||||| ||||||| |||| | ||| |||||||||||    
T  4526218 atgtaaaagtgtgttgaactataaatttgtgtgtaaaaatcaattttaaaatcaaaagttacaaattataggtacaaatagaatcaatt 4526130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 161
Target Start/End: Original strand, 40736531 - 40736677
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccgga 115  Q
    ||||| || ||||||| | ||||| ||||||||||||||| || || ||| ||| |||||||||| |||||| |||| ||||||||||||||||| ||||    
T  40736531 atattaatataaaaattaattgaattataaatttgtgtgtgaaaattaat-ctagaatcaaaagcgacaaattatagtttcaagtagaatcaatttcgga 40736629  T
Q  116 ggcagaatcaattcttattctacaac---caaacatgtcaaaatcaatt 161  Q
     ||| |||||||| ||| || |||||   |||||| |||||||||||||    
T  40736630 tgcaaaatcaatt-ttactcgacaacaatcaaacacgtcaaaatcaatt 40736677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 25359554 - 25359679
Alignment:
Q  4 tttgtgtttgga-atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtag 102  Q
    |||||||||||| | |||||| || || ||| || ||| |||||| ||||||| || ||||||| || ||| |||| ||||||||  || ||||||||||    
T  25359554 tttgtgtttggatacattcatatagaagtgattttaacaataaatatgtgtgtgaaaatcaattatagaataaaaaactacaaattctaacttcaagtag 25359653  T
Q  103 aatcaattccggaggcagaatcaatt 128  Q
    ||||||||| ||||||||||||||||    
T  25359654 aatcaattctggaggcagaatcaatt 25359679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 35264406 - 35264518
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggagg 117  Q
    |||||||||||||||| |||||| ||||||||  |||| || |||||||||| |||||||||||  || |  ||| ||||||||||||||  |  |||||    
T  35264406 attcatgtaaaaatgacttgaacaataaatttaagtgttaaaatcaattctagaatcaaaagctctaatttctagtttcaagtagaatcatatttggagg 35264505  T
Q  118 cagaatcaattct 130  Q
    |||||||||||||    
T  35264506 cagaatcaattct 35264518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 44771771 - 44771672
Alignment:
Q  31 tgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaattct 130  Q
    |||||||||||  |||||  |||||||| ||||||| || |||||||||||||||||  ||| || | ||||||||||||||||||||| || |||||||    
T  44771771 tgagttgaacttcaaattaatgtgtaaaaatcaattttagaatcaaaagctacaaattctagatttaggtagaatcaattccggaggcaaaaccaattct 44771672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 32523336 - 32523422
Alignment:
Q  19 ttcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagctt-caagtagaa 104  Q
    |||||||| || |||||| |||| |||||||||||||||| ||||||| || |||||||||||||||||| || ||| |||||||||    
T  32523336 ttcatgtataagtgagttaaactctaaatttgtgtgtaaaaatcaattttagaatcaaaagctacaaatcctaacttccaagtagaa 32523422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 47356240 - 47356333
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||||||  | ||||||| ||||||| |||||||| ||||||||||||||||||  ||| ||||| || |||||||| ||||| ||||    
T  47356240 attcatgtaaaaacaatttgaactttaaatttatgtgtaaaaatcaattctataatcaaagactataaatcttaacttcaagtggaatcgattc 47356333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 42913144 - 42913052
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||| ||||||||| ||||||| |||||| |||| ||||||||||||||||| ||| ||||  || |||| ||| ||||||||| ||||||||    
T  42913144 attcttgtaaaaataagttgaaatataaaattgtttgtaaagatcaattctagaataaaaaattataaattataacttcaagtataatcaatt 42913052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 41596144 - 41596211
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaa 85  Q
    ||||||| |||| |||||  ||||||||| ||||||||||| ||||||||| ||||||||||||||||    
T  41596144 attcatggaaaagtgagtcaaactataaacttgtgtgtaaaaatcaattctttaatcaaaagctacaa 41596211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 46853527 - 46853602
Alignment:
Q  16 atattcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcata 91  Q
    ||||| |||||||| |||||||||| ||||||||| |||| || |||||||||| ||||||||||| | |||||||    
T  46853527 atatttatgtaaaagtgagttgaacaataaatttgagtgttaaaatcaattctagaatcaaaagctccgaatcata 46853602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 7717323 - 7717428
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggagg 117  Q
    ||||||||| || |||||||||| ||||||||| |||||||       || | ||||| ||||||||| |  |||||||||||||||||||||| |||||    
T  7717323 attcatgtagaagtgagttgaacaataaatttgagtgtaaa-------tcgagaatcagaagctacaatttctagcttcaagtagaatcaattctggagg 7717415  T
Q  118 cagaatcaattct 130  Q
    || ||||||||||    
T  7717416 caaaatcaattct 7717428  T

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Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 35058115 - 35058065
Alignment:
Q  60 atcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaatt 110  Q
    |||||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  35058115 atcaattctataattaaaagctacaaatcctagcttcatgtagaatcaatt 35058065  T

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Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 35058445 - 35058339
Alignment:
Q  25 taaaaatgagttgaactataa-atttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaat 123  Q
    ||||| |||||||||| |||| ||||| |||| || |||||||||| |||||||||||  || |  ||||| ||||||||||||||||  |||||| |||    
T  35058445 taaaagtgagttgaacaataatatttgagtgttaaaatcaattctagaatcaaaagctcgaatttctagctccaagtagaatcaattcttgaggcaaaat 35058346  T
Q  124 caattct 130  Q
    |||||||    
T  35058345 caattct 35058339  T

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Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 36302273 - 36302139
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggagg 117  Q
    |||||||||||| |||||||||| ||||||||  |||  || |||||||||| |||||||| || |||    ||||||||| ||||||||| || | |||    
T  36302273 attcatgtaaaagtgagttgaacaataaatttaagtgctaaaatcaattctaaaatcaaaatctccaatctctagcttcaaatagaatcaactctgaagg 36302174  T
Q  118 cagaatcaattcttattctacaaccaaacatgtca 152  Q
    || ||||||||||  ||  ||||| ||||||||||    
T  36302173 caaaatcaattctacttgaacaactaaacatgtca 36302139  T

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Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 37335029 - 37335139
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggagg 117  Q
    |||||| |||||||||||||||| || ||||   ||||||| |||||||||| ||||||||||||| | |  || |||| |||| |||||||||  ||||    
T  37335029 attcatataaaaatgagttgaacaatgaattcaagtgtaaaaatcaattctagaatcaaaagctacgatttctaacttctagtaaaatcaattctcgagg 37335128  T
Q  118 cagaatcaatt 128  Q
    || ||||||||    
T  37335129 caaaatcaatt 37335139  T

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Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 31013108 - 31013021
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 105  Q
    ||||||||| || ||||||||| | ||||||||||||| |  |||||||||| | ||||| |||||||||  ||| ||||||||||||    
T  31013108 attcatgtacaagtgagttgaattctaaatttgtgtgttagaatcaattctagattcaaaggctacaaatagtaggttcaagtagaat 31013021  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 27266790 - 27266876
Alignment:
Q  19 ttcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 105  Q
    ||||||||||| | |||||||| ||||||||| ||||||| || ||||||  |||||  |||||||| |  ||||||||||||||||    
T  27266790 ttcatgtaaaagttagttgaacaataaatttgagtgtaaaaattaattcttgaatcattagctacaatttctagcttcaagtagaat 27266876  T

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Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 105
Target Start/End: Complemental strand, 31492839 - 31492770
Alignment:
Q  35 ttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 105  Q
    ||||| ||||||||||||||| || |||||||||| |||||||||||||||||  | ||||||| ||||||    
T  31492839 ttgaattataaatttgtgtgttaa-atcaattctagaatcaaaagctacaaatagttgcttcaaatagaat 31492770  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 42375578 - 42375528
Alignment:
Q  55 taaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 105  Q
    |||| ||||||||||| |||||| ||||||||| |||||||||||||||||    
T  42375578 taaaaatcaattctatgatcaaacgctacaaattatagcttcaagtagaat 42375528  T

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Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 42404292 - 42404242
Alignment:
Q  55 taaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaat 105  Q
    |||| ||||||||||| |||||| ||||||||| |||||||||||||||||    
T  42404292 taaaaatcaattctatgatcaaacgctacaaattatagcttcaagtagaat 42404242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 40147849 - 40147938
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||| |||||||||  |||||||   ||||  | |||||||||| ||||||||||| |||||  |||||| |||||||||||||||    
T  40147849 atgtaaaagtgagttgaatgataaattcaagtgttgaaatcaattctagaatcaaaagctccaaattctagcttgaagtagaatcaattc 40147938  T

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Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 52141243 - 52141320
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagctt 95  Q
    |||||| ||||| ||||||||||||||| | ||||||| || || ||||||| |||| || |||||||||| ||||||    
T  52141243 attcatataaaagtgagttgaactataattatgtgtgtgaaaattaattctagaatcgaatgctacaaatcctagctt 52141320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 5406994 - 5406886
Alignment:
Q  18 attcatgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggagg 117  Q
    |||||||||||| ||| |||||   ||||||||| |  ||| |||||||||||||||| ||||||| | |  ||||||| ||||||||| ||||  ||||    
T  5406994 attcatgtaaaagtgatttgaagagtaaatttgttt--aaaaatcaattctataatcagaagctaccatttctagcttcgagtagaatccattctagagg 5406897  T
Q  118 cagaatcaatt 128  Q
    || ||||||||    
T  5406896 caaaatcaatt 5406886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 87
Target Start/End: Original strand, 4401416 - 4401470
Alignment:
Q  33 agttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaat 87  Q
    ||||||| |||||||| ||||||||| ||||| | || |||||||||||||||||    
T  4401416 agttgaattataaattggtgtgtaaaaatcaactttaaaatcaaaagctacaaat 4401470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 539
Target Start/End: Original strand, 9505183 - 9505261
Alignment:
Q  461 cgttaaacttagttcatgaatcaaatgagttgaccttaaactgaaaattaaattaattaactaaatgagtagaacttga 539  Q
    |||| ||||| ||||||||| |||||||||||| ||| | ||||||||||| ||  |||| ||||||||  ||||||||    
T  9505183 cgttgaacttggttcatgaaccaaatgagttgaacttgagctgaaaattaagttcgttaaataaatgagctgaacttga 9505261  T

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Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 539
Target Start/End: Complemental strand, 28701074 - 28700997
Alignment:
Q  462 gttaaacttagttcatgaatcaaatgagttgaccttaaactgaaaattaaattaattaactaaatgagtagaacttga 539  Q
    |||||| ||| |||||||| ||||| ||||||  || ||||||||||||||||  ||||  |||||||| ||||||||    
T  28701074 gttaaatttaattcatgaaccaaataagttgaagttgaactgaaaattaaattcgttaaaaaaatgagttgaacttga 28700997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 32112028 - 32111991
Alignment:
Q  74 caaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  32112028 caaaagctacaaattgtagcttcaagtagaatcaattc 32111991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 41115413 - 41115450
Alignment:
Q  74 caaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  41115413 caaaagctacaaattctagcttcaagtagaatcaattc 41115450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 129
Target Start/End: Original strand, 44958619 - 44958712
Alignment:
Q  36 tgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattccggaggcagaatcaattc 129  Q
    ||||| ||||| ||| |||| || |||| ||||| ||||||||||| ||| |  |||| || ||||||||||| || ||||||| |||||||||    
T  44958619 tgaacaataaagttgagtgttaaaatcatttctagaatcaaaagctccaatttctagcatcgagtagaatcaactctggaggcaaaatcaattc 44958712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 22 - 106
Target Start/End: Complemental strand, 3776608 - 3776524
Alignment:
Q  22 atgtaaaaatgagttgaactataaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatc 106  Q
    |||||||| |||||| | | | ||||||| ||||||| || ||||||| ||||| ||||||||| |  ||| |||||||||||||    
T  3776608 atgtaaaagtgagttcagcaacaaatttgagtgtaaaaattaattctagaatcagaagctacaatttctagattcaagtagaatc 3776524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 40339259 - 40339223
Alignment:
Q  75 aaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    |||||||||||||  ||||||||||||||||||||||    
T  40339259 aaaagctacaaattgtagcttcaagtagaatcaattc 40339223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 46943234 - 46943171
Alignment:
Q  43 taaatttgtgtgtaaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatca 107  Q
    ||||||||||||| || ||||||| | ||| |||||||||  ||||||| |||||||||||||||    
T  46943234 taaatttgtgtgtgaa-atcaattatgtaagcaaaagctaataatcataacttcaagtagaatca 46943171  T

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Target: scaffold0005 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 220596 - 220692
Alignment:
Q  17 tattcatgtaaaaatgagttgaactataaatttgtgtgt--aaagatcaattctataatcaaaagctacaaatcatagcttcaagtagaatcaattc 111  Q
    ||||||| ||||| ||| ||||||||||||||| ||| |  ||| |||||||||| |||||||| || |||| ||||||||||||||||||||||||    
T  220596 tattcatataaaagtgaattgaactataaatttttgtatctaaaaatcaattctagaatcaaaaactgcaaaacatagcttcaagtagaatcaattc 220692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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