View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16658_low_6 (Length: 552)
Name: NF16658_low_6
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16658_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 458; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 20 - 544
Target Start/End: Original strand, 8003570 - 8004095
Alignment:
| Q |
20 |
accaagaggttcagaatctttctggtggagagttgcaaagagttgccttatgcctttgtcttggaaaggtattttatgtttcatccttgggattacttgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8003570 |
accaagaggttcagaatctttctggtggagagttgcaaagagttgccttatgcctttgtcttggaaaggtattttatgtttcatccttgggattacctgt |
8003669 |
T |
|
| Q |
120 |
gcatcttagttcttgtgtctgccctgtcttttctttcccttctacattcttgaatacattagtagtttcctatataccagcggaatttggctctctcaga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8003670 |
gcatcttagttcttgtgtctgccctgtcttttctttcccttctacattcttgaatacattagtagtttcctatataccagcggaatttggctctctcaga |
8003769 |
T |
|
| Q |
220 |
gtgagtgatttactttagattgatgacaatctatggtctgctgtgatttgttatgaatgttcatcaactgctgtttattttttctatggttgagatgttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8003770 |
gtgagtgatttactttagattgatgacaatctatggtctgctgtgatttgttatgaatgttcatcaactgctgtttattttttctatggttgagatgttg |
8003869 |
T |
|
| Q |
320 |
tacttccccgacttttgagaagccaaatctttgttggtgatgtcagctggannnnnnncaaattatgtaacggaaacaagttaaaagctaaacctgtgtt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8003870 |
tacttccccgacttttgagaagccaaatctttgttggtgatgtcagctggatttttttcaaattatgtaacggaaacaagttaaaagctaaacctgtgtt |
8003969 |
T |
|
| Q |
420 |
ga-nnnnnnnnngaaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgatc |
518 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8003970 |
gattttttttttgaaacttgaatttgttgtgattgatctatgtctgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgatt |
8004069 |
T |
|
| Q |
519 |
cattactgttctatttgtgatgatgt |
544 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8004070 |
cattactgttctatttgtgatgatgt |
8004095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 20 - 512
Target Start/End: Complemental strand, 7904990 - 7904498
Alignment:
| Q |
20 |
accaagaggttcagaatctttctggtggagagttgcaaagagttgccttatgcctttgtcttggaaaggtattttatgtttcatccttgggattacttgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7904990 |
accaagaggttcagaatctttctggtggagagttgcaaagagttgccttatgcctttgtcttggaaaggtattttatgtttcatccttgggattacctgt |
7904891 |
T |
|
| Q |
120 |
gcatcttagttcttgtgtctgccctgtcttttctttcccttctacattcttgaatacattagtagtttcctatataccagcggaatttggctctctcaga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7904890 |
gcatcttagttcttgtgtctgccctgtcttttctttcccttctacattcttgaatacattagtagtttcctatataccagcggaatttggctctctcaga |
7904791 |
T |
|
| Q |
220 |
gtgagtgatttactttagattgatgacaatctatggtctgctgtgatttgttatgaatgttcatcaactgctgtttattttttctatggttgagatgttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7904790 |
gtgagtgatttactttagattgatgacaatctatggtctgctgtgatttgttatgaatgttcatcaactgctgtttattttttctatggttgagatgttg |
7904691 |
T |
|
| Q |
320 |
tacttccccgacttttgagaagccaaatctttgttggtgatgtcagctggannnnnnncaaattatgtaacggaaacaagttaaaagctaaacctgtgtt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7904690 |
tacttccccgacttttgagaagccaaatctttgttggtgatgtcagctggatttttttcaaattatgtaacggaaacaagttaaaagctaaacctgtgtt |
7904591 |
T |
|
| Q |
420 |
gannnnnnnnngaaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattc |
512 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7904590 |
gatttttttttgaaacttgaatttgttgtgattgatctatgtctgtctctttaatgtatacattttacttcaaacaaaatattaattgaattc |
7904498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 23 - 544
Target Start/End: Complemental strand, 7901534 - 7901011
Alignment:
| Q |
23 |
aagaggttcagaatctttctggtggagagttgcaaagagttgccttatgcctttgtcttggaaaggtattttatgtttcatccttgggattacttgtgca |
122 |
Q |
| |
|
|||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7901534 |
aagacgttaagaatctttctggaggagagttgcaaagagtagccttatgcctttgtcttggaaaggtattttatgtttcatccttgggattgcttgtgca |
7901435 |
T |
|
| Q |
123 |
tcttagttcttgtgtctgccctgtcttttctttcccttctacattcttgaatacattagtagtttcctatataccagcggaatttggctctctcagagtg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
7901434 |
ccttagttcttgtgtctgccctgtcttttctttcccttctacattcttgaatacaatcttagtttcctatataccagtggaattttgctctttcagagtg |
7901335 |
T |
|
| Q |
223 |
agtgatttactttagattgatgacaatctatggtctgctgtgatttgttatgaatgttcatcaactgctgtttattttttctatggttgagatgttgtac |
322 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7901334 |
agttatttactttagattgatgacaatctatgatctgctgtgatttgctatgaatgttcatcaactgctgtttattttttctatggttgagatgttgtac |
7901235 |
T |
|
| Q |
323 |
ttccccgacttttgagaagccaaatctttgttggtgatgtcagctggannnnnnncaaattatgtaacggaaacaagttaaaagctaaacctgtgttga- |
421 |
Q |
| |
|
|| || |||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
7901234 |
tttcctcacttttgagatgcccaatctttgttggtgatgtcagctggatttttttcaaattatgtaacggaaataagttaaaagctcaacctgtgttgat |
7901135 |
T |
|
| Q |
422 |
-nnnnnnnnngaaacttgaatttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgatcca |
520 |
Q |
| |
|
||||||| |||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7901134 |
tttttttttttaaacttggatttgttgtgattgatctatttatatctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgattca |
7901035 |
T |
|
| Q |
521 |
ttactgttctatttgtgatgatgt |
544 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7901034 |
ttactgttctatttgtgatgatgt |
7901011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 23 - 512
Target Start/End: Complemental strand, 7903365 - 7902873
Alignment:
| Q |
23 |
aagaggttcagaatctttctggtggagagttgcaaagagttgccttatgcctttgtcttggaaaggtattttatgtttcatccttgggattacttgtgca |
122 |
Q |
| |
|
|||| ||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7903365 |
aagacgttaagaatctttctggaggagagttgcaaagagtagccttatgcctttgtcttggaaaggtattttatgtttcatccttgggattgcttgtgca |
7903266 |
T |
|
| Q |
123 |
tcttagttcttgtgtctgccctgtcttttctttcccttctacattcttgaatacattagtagtttcctatataccagcggaatttggctctctcagagtg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
7903265 |
ccttagttcttgtgtctgccctgtcttttctttcccttctacattcttgaatacaatcttagtttcctatataccagtggaattttgctctttcagagtg |
7903166 |
T |
|
| Q |
223 |
agtgatttactttagattgatgacaatctatggtctgctgtgatttgttatgaatgttcatcaactgctgtttattttttctatggttgagatgttgtac |
322 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7903165 |
agttatttactttagattgatgacaatctatgatctgctgtgatttgctatgaatgttcatcaactgctgtttattttttctatggttgagatgttgtac |
7903066 |
T |
|
| Q |
323 |
ttccccgacttttgagaagccaaatctttgttggtgatgtcagctggannnnnnncaaattatgtaacggaaacaagttaaaagctaaacctgtgttga- |
421 |
Q |
| |
|
|| || |||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
7903065 |
tttcctcacttttgagatgcccaatctttgttggtgatgtcagctggatttttttcaaattatgtaacggaaataagttaaaagctcaacctgtgttgat |
7902966 |
T |
|
| Q |
422 |
-nnnnnnnnngaaacttgaatttgttgtgattgatctatgtttgtctctttaatgt-atacattttacttcaaacaaaatattaattgaattc |
512 |
Q |
| |
|
||||||| |||||||||||||||||||| | | |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902965 |
tttttttttttaaacttggatttgttgtgattgatctatttatatctctttaatgtaatacattttacttcaaacaaaatattaattgaattc |
7902873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 51517879 - 51517972
Alignment:
| Q |
20 |
accaagaggttcagaatctttctggtggagagttgcaaagagttgccttatgcctttgtcttggaaaggtattttatgtttcatccttgggatt |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
51517879 |
accaagaggttcagaatctttctggtggagagttgcaaagagttgccttatgcctttgtcttggaaaggtattttatgtttcatccttgagatt |
51517972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 101 - 213
Target Start/End: Original strand, 51517987 - 51518099
Alignment:
| Q |
101 |
catccttgggattacttgtgcatcttagttcttgtgtctgccctgtcttttctttcccttctacattcttgaatacattagtagtttcctatataccagc |
200 |
Q |
| |
|
|||||||| |||| ||| |||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
51517987 |
catccttgagattgcttatgcaccttagttcttgtgtctgtcctgtcttttcttccccttctacattcttgaatacattcgtagtttcttatataccagc |
51518086 |
T |
|
| Q |
201 |
ggaatttggctct |
213 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
51518087 |
gtaatttggctct |
51518099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 247 - 531
Target Start/End: Original strand, 51518159 - 51518446
Alignment:
| Q |
247 |
aatctatggtctgctgtgatttgttatgaatgttcatcaactgctgtttattttttctatggttgagatgttgtacttccccgacttttgagaagccaaa |
346 |
Q |
| |
|
|||||||| | ||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||| |||||||||||||| || | |||||||||| |
|
|
| T |
51518159 |
aatctatgatttgctgtgatttgttatgtttgttcttcaactgctgtttatttcttcaatggttgaaatgttgtacttccc--acactagagaagccaac |
51518256 |
T |
|
| Q |
347 |
tctttgttggtgatgtcagctg------gannnnnnncaaattatgtaacggaaacaagttaaaagctaaacctgtgttgannnnnnnnngaaacttgaa |
440 |
Q |
| |
|
||| |||||||||||||||||| |||| |||| || |||| ||||||| ||||||| |||||||| |||||||| | |
|
|
| T |
51518257 |
tctgtgttggtgatgtcagctgtttttttttttctttcaaaatatgcaatataaacgagttaaatgctaaacatgtgttga-ttttcttggaaacttgga |
51518355 |
T |
|
| Q |
441 |
tttgttgtgattgatctatgtttgtctctttaatgtatacattttacttcaaacaaaatattaattgaattcacgatccattactgttcta |
531 |
Q |
| |
|
||||||||||||| | ||| | | ||| || ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
51518356 |
tttgttgtgattgttatatttctatctgttaaatgtatacattttatttcaaacaaaatattaattgaattcacattccattactgttcta |
51518446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 33 - 173
Target Start/End: Complemental strand, 1301335 - 1301184
Alignment:
| Q |
33 |
gaatctttctggtggagagttgcaaagagttgccttatgcctttgtcttggaaaggtattttatgtttcatccttg-----------ggattacttgtgc |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| |||| |||| || |
|
|
| T |
1301335 |
gaatctttctggtggagagttgcaaagagtttacttatgtctttgtcttggaaaggtattttaagtttcatccttgaaaactgcataagattgcttgcgc |
1301236 |
T |
|
| Q |
122 |
atcttagttcttgtgtctgccctgtcttttctttcccttctacattcttgaa |
173 |
Q |
| |
|
| |||| |||| ||||||||||||| |||||||||| || |||||||||||| |
|
|
| T |
1301235 |
accttaattctagtgtctgccctgttttttctttcctttttacattcttgaa |
1301184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 531
Target Start/End: Complemental strand, 1300855 - 1300798
Alignment:
| Q |
474 |
tgtatacattttacttcaaacaaaatattaattgaattcacgatccattactgttcta |
531 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
1300855 |
tgtatacattttatttcaaaataaatattaattgaattcctgatccattacggttcta |
1300798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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