View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16658_low_9 (Length: 520)

Name: NF16658_low_9
Description: NF16658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16658_low_9
NF16658_low_9
[»] chr1 (3 HSPs)
chr1 (26-506)||(15593742-15594220)
chr1 (282-467)||(4679576-4679758)
chr1 (305-345)||(29464835-29464875)
[»] chr7 (4 HSPs)
chr7 (274-506)||(8586692-8586921)
chr7 (282-506)||(8615676-8615897)
chr7 (420-506)||(3146363-3146449)
chr7 (281-346)||(8658323-8658388)
[»] chr2 (1 HSPs)
chr2 (274-506)||(16662981-16663210)
[»] chr8 (3 HSPs)
chr8 (426-506)||(43743918-43743998)
chr8 (70-210)||(1767117-1767256)
chr8 (422-506)||(43445783-43445868)
[»] chr4 (1 HSPs)
chr4 (361-506)||(30774289-30774434)
[»] chr5 (1 HSPs)
chr5 (447-503)||(28219041-28219097)
[»] scaffold0248 (1 HSPs)
scaffold0248 (172-244)||(17757-17829)


Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 26 - 506
Target Start/End: Original strand, 15593742 - 15594220
Alignment:
Q  26 tttgggagacaaggtgcaaagaaagctcaaataaaccnnnnnnngattattaactaaagcacaagagcctgatagggatcttaatttggaagcagtgttt 125  Q
    ||||| ||||||||| || ||||||||||||||||||       ||||||||||||||||||||| |||||||||||||||| |||||||||||  ||||    
T  15593742 tttggaagacaaggtccatagaaagctcaaataaaccaaaaac-gattattaactaaagcacaagtgcctgatagggatcttgatttggaagcaaggttt 15593840  T
Q  126 -caaatatgctctactaaaactagaaaacaagacaaaacacacaaacaatttaagtaacatgttccatgcagatttcatcataaacatcaatacttttag 224  Q
     ||||||||||  |||||||||||||||||||||| || |||||||||||||||| |||||||| | |||| |||||||||||||||||||||||||| |    
T  15593841 tcaaatatgct--actaaaactagaaaacaagacagaaaacacaaacaatttaagcaacatgtttcgtgcaaatttcatcataaacatcaatactttttg 15593938  T
Q  225 ataatgataatcaacctaaatgtttgttatgctaaacaaagaagaatataactagtcagtcttgactacaaggttttcgaacatgctctcgagctccttc 324  Q
    |||||||||||||||||||||||||||| |||| ||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  15593939 ataatgataatcaacctaaatgtttgttgtgctgaacaaagaagagtaaaactagccagtcttgactacaaggttttcgaacatgctctcgagctccttc 15594038  T
Q  325 agattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctt 424  Q
    | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  15594039 aaattaccctcaagaacatctacttcattatgctggttattcttcttatcaagcaaatttgtagccactgtaattgcaccattgatctttgtaacttctt 15594138  T
Q  425 tagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattac 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15594139 tagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattac 15594220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 282 - 467
Target Start/End: Complemental strand, 4679758 - 4679576
Alignment:
Q  282 agtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaa 381  Q
    |||||||||| |||| ||||| ||||||||||| | ||||||||||| | ||||||||||||||| ||| ||   ||| |  || ||||||||||||||     
T  4679758 agtcttgacttcaagcttttccaacatgctctccaactccttcagatgatcctcaagaacatctatttcttt---ctgttcgttattcttatcaagcaag 4679662  T
Q  382 tttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatt 467  Q
    || |  ||||||||||||||| | || ||||||  |  ||| | | ||||||| ||||| || |||||||| ||||| | ||||||    
T  4679661 ttggtggccactgtaattgcatcgttgatcttttcactttcatcacaagagagctttaaattaacatccttcttctttaaagcatt 4679576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 29464835 - 29464875
Alignment:
Q  305 acatgctctcgagctccttcagattaccctcaagaacatct 345  Q
    |||||||||| ||||||| ||||| ||||||||||||||||    
T  29464835 acatgctctccagctcctccagatgaccctcaagaacatct 29464875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 274 - 506
Target Start/End: Complemental strand, 8586921 - 8586692
Alignment:
Q  274 aactagtcagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttat 373  Q
    |||||| || ||||||| | ||||| ||| ||||||||||| ||||||||||||| | || ||||||||||||  ||||| | ||||| ||||||   ||    
T  8586921 aactagccactcttgaccaaaaggtcttccaacatgctctcaagctccttcagatgatccacaagaacatctatgtcattctcctggttattctt---at 8586825  T
Q  374 caagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaa 473  Q
    |||||||||||| ||||| ||||||||||  ||| |||||| |||||| || |||||||   |||| ||| | |||||||||||| |||||||| || ||    
T  8586824 caagcaaatttgtagccattgtaattgcatgattgatctttttaactttttgagaagagcactttagtttaatatccttattctttagagcattccttaa 8586725  T
Q  474 cttgtaaacacagtcatctaatgcattcattac 506  Q
    |||||||||||| |||||||||| |||||||||    
T  8586724 cttgtaaacacaatcatctaatgaattcattac 8586692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 506
Target Start/End: Original strand, 8615676 - 8615897
Alignment:
Q  282 agtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttatcaagcaaa 381  Q
    |||||| | |||||||| ||| ||||| || | |||||||||||||| | | || ||||| ||||||||| | ||||||| |||| |   ||||||||||    
T  8615676 agtcttaaatacaaggtcttccaacatacttttgagctccttcagatgatcttcgagaacttctacttcactctgctggttattcct---atcaagcaaa 8615772  T
Q  382 tttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaa 481  Q
    |||| |||||| |||||||||   || || |||  ||||| || ||| || || |||||    |||||||||||||| |||||||| |||||||||||||    
T  8615773 tttgtagccacagtaattgcattgttgatattttcaactttttgagatgatagctttaaagcaacatccttattctttagagcattcctcaacttgtaaa 8615872  T
Q  482 cacagtcatctaatgcattcattac 506  Q
      |||||||||||| ||||||||||    
T  8615873 tgcagtcatctaattcattcattac 8615897  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 506
Target Start/End: Original strand, 3146363 - 3146449
Alignment:
Q  420 ttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattac 506  Q
    ||||| ||| ||||| ||||  || |||||||| ||||| | ||||||| ||| |||||||||||| | ||||||||||||||||||    
T  3146363 ttcttgagaggagagatttatattcacatccttcttctttaaagcatttttcatcttgtaaacacaataatctaatgcattcattac 3146449  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 346
Target Start/End: Original strand, 8658323 - 8658388
Alignment:
Q  281 cagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatcta 346  Q
    |||| ||||||||||| ||||| |||||| | || ||||||||||||| | |||||| ||||||||    
T  8658323 cagtattgactacaagcttttccaacatgatttccagctccttcagatgatcctcaacaacatcta 8658388  T

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Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 274 - 506
Target Start/End: Complemental strand, 16663210 - 16662981
Alignment:
Q  274 aactagtcagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattcttcttat 373  Q
    |||||| ||||||||| ||||||||  || ||||| ||||| ||||||||||||| | ||||||||||||||||||||||   |||||   |||||| ||    
T  16663210 aactagacagtcttgattacaaggtgatccaacatactctcaagctccttcagatgatcctcaagaacatctacttcattcccctggt---tcttctcat 16663114  T
Q  374 caagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttcagagcatttctcaa 473  Q
     |||||||| |  |||||| |||||||||  ||| |||||| ||  || ||   |||| || ||||||||||||| ||||||||| |||||||| |||||    
T  16663113 gaagcaaatctttagccaccgtaattgcatgattgatctttttatttttttggaaagaaagctttaatttgacattcttattctttagagcattcctcaa 16663014  T
Q  474 cttgtaaacacagtcatctaatgcattcattac 506  Q
     |||||||  |||||||||||||||||||||||    
T  16663013 tttgtaaatgcagtcatctaatgcattcattac 16662981  T

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Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 426 - 506
Target Start/End: Original strand, 43743918 - 43743998
Alignment:
Q  426 agaagagagttttaatttgacatccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcattac 506  Q
    |||||| || |||||||| |||||||||||||| | |||||| |||||||||||||| || ||||||||||||||||||||    
T  43743918 agaagaaagctttaatttaacatccttattctttacagcattcctcaacttgtaaacccattcatctaatgcattcattac 43743998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 210
Target Start/End: Original strand, 1767117 - 1767256
Alignment:
Q  70 gattattaactaaagcacaagagcctgatagggatcttaatttggaagcagtgttt-caaatatgctctactaaaactagaaaacaagacaaaacacaca 168  Q
    |||||||||||  ||||||||| ||  | ||||||||| || | ||||||  |||| |||||||| |  |||||||||| ||||||||| | || ||| |    
T  1767117 gattattaacttgagcacaagaaccataaagggatcttgatcttgaagcaaggttttcaaatatgtt--actaaaactaaaaaacaagaaagaaaacaga 1767214  T
Q  169 aacaatttaagtaacatgttccatgcagatttcatcataaac 210  Q
    ||||||||||||| ||||||| ||||| | || |||||||||    
T  1767215 aacaatttaagtagcatgttcaatgcaaacttgatcataaac 1767256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 422 - 506
Target Start/End: Original strand, 43445783 - 43445868
Alignment:
Q  422 ctttagaagagagttttaatttgacatccttattcttcagagcatttctcaacttgt-aaacacagtcatctaatgcattcattac 506  Q
    ||||||| ||||| |||||||| | |||||||||||| | | |||| |||||| ||| |||| || ||||||||||||||||||||    
T  43445783 ctttagacgagagctttaatttaatatccttattctttacaacattcctcaacctgtaaaacccattcatctaatgcattcattac 43445868  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 361 - 506
Target Start/End: Original strand, 30774289 - 30774434
Alignment:
Q  361 tgattcttcttatcaagcaaatttgcagccactgtaattgcaccatttatctttgtaacttctttagaagagagttttaatttgacatccttattcttca 460  Q
    ||||| ||||||||||||||||||| |||||||| ||||||| || | |||||| | | || || ||| || || ||||| || || |||||| |||| |    
T  30774289 tgattattcttatcaagcaaatttgtagccactgcaattgcatcagtgatctttttgagtttttgagatgatagctttaaatttacgtccttaatcttta 30774388  T
Q  461 gagcatttctcaacttgtaaacacagtcatctaatgcattcattac 506  Q
    || |||| |||||||||||||  |||  ||||||||||||||||||    
T  30774389 gaccattcctcaacttgtaaatgcagcaatctaatgcattcattac 30774434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 447 - 503
Target Start/End: Original strand, 28219041 - 28219097
Alignment:
Q  447 atccttattcttcagagcatttctcaacttgtaaacacagtcatctaatgcattcat 503  Q
    |||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||    
T  28219041 atccttattctttagagcattcctcaacttgtaaacgcagtcatctaatgcattcat 28219097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 17829 - 17757
Alignment:
Q  172 aatttaagtaacatgttccatgcagatttcatcataaacatcaatacttttagataatgataatcaacctaaa 244  Q
    |||||||||||||||||| ||||| |||| |  |||||| |||||| | ||||||||||||||| ||||||||    
T  17829 aatttaagtaacatgttcaatgcaaattttacaataaacttcaataatgttagataatgataattaacctaaa 17757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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