View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16659_high_2 (Length: 651)

Name: NF16659_high_2
Description: NF16659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16659_high_2
NF16659_high_2
[»] chr7 (8 HSPs)
chr7 (427-635)||(17173543-17173751)
chr7 (274-366)||(17173390-17173482)
chr7 (220-282)||(17173025-17173087)
chr7 (517-610)||(13467479-13467569)
chr7 (575-618)||(13644022-13644065)
chr7 (575-618)||(13706471-13706514)
chr7 (462-550)||(13644066-13644154)
chr7 (1-49)||(15961089-15961137)
[»] chr4 (2 HSPs)
chr4 (462-619)||(34653347-34653504)
chr4 (314-354)||(34653198-34653238)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 427 - 635
Target Start/End: Original strand, 17173543 - 17173751
Alignment:
Q  427 ccatgataactttattactaataaacccaacccatcttaagggtttttattgatcatctccatgagatcaatttcttgattaagaggaacctcaagaaaa 526  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17173543 ccatgataactttattaccaataaacccaacccatcttaagggtttttattgatcatctccatgagatcaatttcttgattaagaggaacctcaggaaaa 17173642  T
Q  527 aactcaattccatttgatccaaactcataattcattgtggtaccagatccacttgccattccatcatcaccattgaacatcattggaacatactcacaaa 626  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17173643 aactcaattccatatgatccaaactcataattcattgtggtaccagatccacttgccattccatcatcaccattgaacatcattggaacatactcacaaa 17173742  T
Q  627 ttttgttct 635  Q
    |||||||||    
T  17173743 ttttgttct 17173751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 274 - 366
Target Start/End: Original strand, 17173390 - 17173482
Alignment:
Q  274 taaaagttatacatacaagtcataatagtaaacaagcattagttccatccacaagaaaacttagcaaaacaaaataactctaaatacagtcat 366  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17173390 taaaagtcatacatccaagtcataatagtaaacaagcattagttccatccacaagaaaacttagcaaaacaaaataactctaaatacagtcat 17173482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 17173025 - 17173087
Alignment:
Q  220 taccttaaaaagacataattatttagaccacatactgaaggtttcaagtctccataaaagtta 282  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  17173025 taccttaaaaagacataattatatagaccacatactaaaggtttcaagtctccataaaagtta 17173087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 517 - 610
Target Start/End: Original strand, 13467479 - 13467569
Alignment:
Q  517 ctcaagaaaaaactcaattccatttgatccaaactcataattcattgtggtaccagatccacttgccattccatcatcaccattgaacatcatt 610  Q
    |||| |||||||||| |||||||  ||||| ||| ||||||||||||||   ||| | ||||||| ||||||||||||||| |||| |||||||    
T  13467479 ctcaggaaaaaactccattccatacgatccgaacccataattcattgtg---ccatacccacttgtcattccatcatcaccgttgagcatcatt 13467569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 575 - 618
Target Start/End: Complemental strand, 13644065 - 13644022
Alignment:
Q  575 ccacttgccattccatcatcaccattgaacatcattggaacata 618  Q
    ||||||||||||||||||||| |||||||||||||||| |||||    
T  13644065 ccacttgccattccatcatcatcattgaacatcattggcacata 13644022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 575 - 618
Target Start/End: Complemental strand, 13706514 - 13706471
Alignment:
Q  575 ccacttgccattccatcatcaccattgaacatcattggaacata 618  Q
    ||||||||||||||||||||| |||||||||||||||| |||||    
T  13706514 ccacttgccattccatcatcatcattgaacatcattggcacata 13706471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 462 - 550
Target Start/End: Complemental strand, 13644154 - 13644066
Alignment:
Q  462 cttaagggtttttattgatcatctccatgagatcaatttcttgattaagaggaacctcaagaaaaaactcaattccatttgatccaaac 550  Q
    ||||||||||| |||  ||| |||||||||| |||||||| || ||   |||||  ||| |||||||||| ||||||||||||||||||    
T  13644154 cttaagggtttctatatatcttctccatgaggtcaatttcctgctttttaggaatttcaggaaaaaactccattccatttgatccaaac 13644066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15961137 - 15961089
Alignment:
Q  1 ttttacttttgattttcatttttgatggtcttaaccgtcactctgtata 49  Q
    ||||||||||||| |||| ||||| ||||||| ||||| ||||||||||    
T  15961137 ttttacttttgatcttcacttttggtggtcttcaccgttactctgtata 15961089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 462 - 619
Target Start/End: Original strand, 34653347 - 34653504
Alignment:
Q  462 cttaagggtttttattgatcatctccatgagatcaatttcttgattaagaggaacctcaagaaaaaactcaattccatttgatccaaactcataattcat 561  Q
    ||||||| ||| ||| ||||||  |||||| ||||||||| || || |  ||||||||  |||||||||| ||||||| || |||||| |||||| || |    
T  34653347 cttaaggatttctatagatcatacccatgaaatcaatttcctgcttcattggaacctcgggaaaaaactccattccatatgttccaaaatcataactcgt 34653446  T
Q  562 tgtggtaccagatccacttgccattccatcatcaccattgaacatcattggaacatac 619  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34653447 tgtggtgccagatccacttgccattccatcatcaccattgaacatcattggagcatac 34653504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 34653198 - 34653238
Alignment:
Q  314 agttccatccacaagaaaacttagcaaaacaaaataactct 354  Q
    |||| |||||||||| ||||| |||||||||||||||||||    
T  34653198 agttgcatccacaaggaaactaagcaaaacaaaataactct 34653238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University