View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16659_high_6 (Length: 442)
Name: NF16659_high_6
Description: NF16659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16659_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 32802560 - 32802351
Alignment:
| Q |
13 |
gattatactcagtgaatgtgtttgtggcagtatgggttttggtggtaggatttggattaggaggatgggcaagtatgcttaatttcgtacaccaaattaa |
112 |
Q |
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| T |
32802560 |
gattatactcagtgaatgtgtttgtggcagtatgggttttggtggtaggatttggattaggaggatgggcaagtatgcttaatttcgtacaccaaattaa |
32802461 |
T |
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| Q |
113 |
aacatttgggctatttgctaagtgctttcagtgtcctcctcataaggcttaattagctctctaattttttgtgacactctcaatttcagatcatacatgt |
212 |
Q |
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| T |
32802460 |
aacatttgggctatttgctaagtgctttcagtgtcctcctcataaggcttaattagctctctaattttttgtgacactctcaatttcagatcatacatgt |
32802361 |
T |
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| Q |
213 |
gtgtaaagag |
222 |
Q |
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|||||||||| |
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| T |
32802360 |
gtgtaaagag |
32802351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 293 - 440
Target Start/End: Complemental strand, 32802280 - 32802130
Alignment:
| Q |
293 |
agaagccagacaa---gtgatgttgattgtatcagctaattaaaggtgtgatggcaatcagggccaccccttataccaacttaatcacaattagagtttc |
389 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32802280 |
agaagccagacaattagtgatgttgattgtatcagctaattaaaggtgtgatggcaatcagggccaccccttataccaacttaatcacaattagagtttc |
32802181 |
T |
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| Q |
390 |
gtgtgctgattaatcatgatatgcactaccccttaatgattatttcttctt |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32802180 |
gtgtgctgattaatcatgatatgcactaccccttaatgattatttcttctt |
32802130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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