View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16659_high_7 (Length: 367)
Name: NF16659_high_7
Description: NF16659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16659_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 47305073 - 47304724
Alignment:
| Q |
1 |
aggtaataaactttataaatacacaatacacttactaattaactcacaagtacatgatcacaagaaatcattattattagtaatagtaattagtagcaca |
100 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
47305073 |
aggtaataaactttataattacacaatacacttactaattaactcacaagtacatgatcacaagaaatcattattattagtaatagtaattagtaacaca |
47304974 |
T |
|
| Q |
101 |
aacacaacatctcatgatgattgctactattgtaatctaaaacagtacaacacaaacacataaaggaaaaacatttccttactcatgaagaaaggaagcc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47304973 |
aacacaacatctcatgatgattgctactattgcaatctaaaacagtacaacacaaacacataaaggaaaaacatttccttactcatgaagaaaggaagcc |
47304874 |
T |
|
| Q |
201 |
aaatgcttgatcaatttctgaccactctcagattcaggatgaaatatatgataaacatgatcttcatcttcttcttcgaacaactccaatttccctttcc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47304873 |
aaatgcttgatcaatttctgaccactctcagattcaggatgaaatatatgataaacatgatcttcatcttcttcttcgaacaactccaatttccctttcc |
47304774 |
T |
|
| Q |
301 |
aaccactcttcttcataagctcataataccaaacccctctctccctaagt |
350 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47304773 |
aaccactcttctttataagctcataataccaaacccctctctccctaagt |
47304724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 4 - 348
Target Start/End: Complemental strand, 47302181 - 47301840
Alignment:
| Q |
4 |
taataaactttataaatacacaatacacttactaattaactcacaagtacatgatcacaagaaatcattattattagtaatagtaattagtagcacaaac |
103 |
Q |
| |
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|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
47302181 |
taatgaactttataattacacaatacacttactaattaactcacaagtacatgatcacaagaaataattattattagtaatagtaattagtaacacaaa- |
47302083 |
T |
|
| Q |
104 |
acaacatctcatgatgattgctactattgtaatctaaaacagtacaacacaaacacataaaggaaaaacatttccttactcatgaagaaaggaagccaaa |
203 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47302082 |
--aacatctcatgatgattgctactattgcaatctaaaacagtacaacacaaacacataaaggaaaaacatttccttactcatgaagaaaggaagccaaa |
47301985 |
T |
|
| Q |
204 |
tgcttgatcaatttctgaccactctcagattcaggatgaaatatatgataaacatgatcttcatcttcttcttcgaacaactccaatttccctttccaac |
303 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
47301984 |
tgcttgatcaatttttgaccactctcagattcaggatgaaagatatgataaacatgatcttcatcttcttcttcaaacaattccaatttccctttccaac |
47301885 |
T |
|
| Q |
304 |
cactcttcttcataagctcataataccaaacccctctctccctaa |
348 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
47301884 |
cactcttcttcacaagctcataataccaaacccctctctccctaa |
47301840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 164 - 346
Target Start/End: Complemental strand, 17842161 - 17841979
Alignment:
| Q |
164 |
aggaaaaacatttccttactcatgaagaaaggaagccaaatgcttgatcaatttctgaccactctcagattcaggatgaaatatatgataaacatgatct |
263 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||| |
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| T |
17842161 |
aggaaaaatatttccttactcatgaagaaaggaagccaaatgcttgatcaatttatgagcactctcagattcaggatgaaagatatgataaacatggtct |
17842062 |
T |
|
| Q |
264 |
tcatcttcttcttcgaacaactccaatttccctttccaaccactcttcttcataagctcataataccaaacccctctctccct |
346 |
Q |
| |
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|||| ||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
17842061 |
tcattttcttcttcaaacaattccaatttccctttccaaccactcttcttcacaagctcataataccaaacccctctctccct |
17841979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 346
Target Start/End: Original strand, 15233731 - 15233828
Alignment:
| Q |
249 |
tgataaacatgatcttcatcttcttcttcgaacaactccaatttccctttccaaccactcttcttcataagctcataataccaaacccctctctccct |
346 |
Q |
| |
|
|||||||||||| | ||||||| ||||| || || ||||||||||||||||| ||||| ||||||| | || |||||||||| ||||||||||| |
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| T |
15233731 |
tgataaacatgaccctcatctttctcttcaaagaattccaatttccctttccacccactattcttcacaccttcccaataccaaactcctctctccct |
15233828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 315
Target Start/End: Complemental strand, 673610 - 673546
Alignment:
| Q |
251 |
ataaacatgatcttcatcttcttcttcgaacaactccaatttccctttccaaccactcttcttca |
315 |
Q |
| |
|
|||||||||||| ||||||| ||||| || || |||| || ||||||||| ||||||||||||| |
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|
| T |
673610 |
ataaacatgatcctcatctttctcttcaaagaattccacttcccctttccatccactcttcttca |
673546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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