View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16659_high_9 (Length: 341)
Name: NF16659_high_9
Description: NF16659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16659_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 326
Target Start/End: Original strand, 38397962 - 38398299
Alignment:
| Q |
3 |
aatacaaaaaggaagatgacagtcacgagagacgatcggaggttattttggtaataatacaatttttatcggagactgtttggtctttaacggaaagtta |
102 |
Q |
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| T |
38397962 |
aatacaaaaaggaagatgacagtcacgagagacgatcggaggttattttcgtaataatacaatttttaacggagactatttggtctttaatggaaagtta |
38398061 |
T |
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| Q |
103 |
ataaaaataactaatgtgtattttatttaaaagttaagggaggggagtgtgtgttttaaaacgatgagggaggggagtgtaatatctctatcttttaggg |
202 |
Q |
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| T |
38398062 |
ataaaaataactaatgtgtattttatttaaaagttaaggtaggggagtgtgtgttttaaaacaatgagggaggggagtgtaatatctttatcttttaggg |
38398161 |
T |
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| Q |
203 |
atcgggagtgtaatttactcaaatcttt--------------accaactcatgaaataatctataagatggacatacatgaaattaaagaataaataata |
288 |
Q |
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| T |
38398162 |
atggggagtgtaatttactcaaatctttaaaatcgtgttttcaccaactcatgaaataatctataacatggacatacatgaaattaaagaataaataaaa |
38398261 |
T |
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| Q |
289 |
ctaccgaaacaaactcatctgccgacatagatatttac |
326 |
Q |
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| T |
38398262 |
ctaccgaaacaaactcatctgccgacatagatatttac |
38398299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 326
Target Start/End: Original strand, 38380470 - 38380532
Alignment:
| Q |
264 |
acatgaaattaaagaataaataatactaccgaaacaaactcatctgccgacatagatatttac |
326 |
Q |
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| T |
38380470 |
acatgaaattgaagagtacataatacaaccgaaacaaactcatccgccgacatagatatttac |
38380532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 38397045 - 38396981
Alignment:
| Q |
135 |
gttaagggaggggagtgtgtgttttaaaacgatgagggaggggagtgtaatatctctatctttta |
199 |
Q |
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| T |
38397045 |
gttaagggagggaagtgttggttttaaaataagaggggaggggagtgtaatatctctatctttta |
38396981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 33299040 - 33298990
Alignment:
| Q |
136 |
ttaagggaggggagtgtgtgttttaaaacgatgagggaggggagtgtaata |
186 |
Q |
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| T |
33299040 |
ttaagggaggggagtgtgtgttttacaacaagaggggaggggagtgtaata |
33298990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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