View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16659_low_11 (Length: 328)

Name: NF16659_low_11
Description: NF16659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16659_low_11
NF16659_low_11
[»] chr1 (3 HSPs)
chr1 (24-309)||(4678252-4678537)
chr1 (65-211)||(34466585-34466731)
chr1 (123-208)||(15595329-15595414)
[»] chr2 (10 HSPs)
chr2 (24-307)||(16657213-16657496)
chr2 (27-208)||(16661787-16661968)
chr2 (123-309)||(43625700-43625887)
chr2 (64-216)||(7542455-7542607)
chr2 (27-211)||(12234881-12235065)
chr2 (70-211)||(17716485-17716626)
chr2 (65-211)||(12245198-12245344)
chr2 (27-253)||(14703600-14703826)
chr2 (70-209)||(17717748-17717887)
chr2 (120-209)||(17703843-17703932)
[»] chr7 (29 HSPs)
chr7 (27-309)||(8659555-8659837)
chr7 (27-308)||(13333151-13333432)
chr7 (27-309)||(8667611-8667893)
chr7 (24-309)||(1301649-1301938)
chr7 (27-309)||(10494068-10494350)
chr7 (27-304)||(8671329-8671606)
chr7 (62-309)||(8654677-8654924)
chr7 (64-285)||(8647106-8647327)
chr7 (27-285)||(8585424-8585682)
chr7 (69-309)||(8628766-8629006)
chr7 (78-282)||(8636064-8636268)
chr7 (64-198)||(17268168-17268302)
chr7 (64-216)||(3147501-3147653)
chr7 (64-208)||(6789741-6789885)
chr7 (78-216)||(8602217-8602355)
chr7 (64-198)||(17260470-17260604)
chr7 (125-309)||(8640240-8640425)
chr7 (78-202)||(8382677-8382801)
chr7 (132-216)||(8590935-8591019)
chr7 (67-211)||(39985878-39986022)
chr7 (78-181)||(27830697-27830800)
chr7 (78-216)||(7877520-7877658)
chr7 (81-190)||(8538282-8538391)
chr7 (77-196)||(8610159-8610278)
chr7 (77-216)||(29581628-29581767)
chr7 (84-216)||(8017200-8017332)
chr7 (142-211)||(8102974-8103043)
chr7 (78-178)||(8559576-8559676)
chr7 (78-181)||(29577491-29577594)
[»] chr4 (6 HSPs)
chr4 (27-309)||(9335585-9335867)
chr4 (65-196)||(30775482-30775613)
chr4 (65-216)||(35132678-35132829)
chr4 (67-211)||(23596377-23596521)
chr4 (67-211)||(23587525-23587669)
chr4 (141-214)||(54396729-54396802)
[»] chr8 (2 HSPs)
chr8 (64-216)||(43745078-43745228)
chr8 (78-216)||(12528747-12528885)
[»] chr5 (1 HSPs)
chr5 (64-216)||(28220180-28220332)
[»] chr6 (2 HSPs)
chr6 (65-211)||(28910812-28910958)
chr6 (80-129)||(11314610-11314659)


Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 24 - 309
Target Start/End: Complemental strand, 4678537 - 4678252
Alignment:
Q  24 aggtcaaagacaaatatatttcgtttacgatcactttcacttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatga 123  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4678537 aggtcaaagacaaatatatttcgtttacaatcactttcacttctcttgtcaaaaccatatgcaatagctgcaacagtaggttcgttgattatttgaatga 4678438  T
Q  124 cattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacagacgaagt 223  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4678437 cattaagtccagcaatggcaccagcatctatggtagcttttcgttgagaatcattgaagtatgcaggcacagtaacaacgacattcttcacagacgaagt 4678338  T
Q  224 tagatatgtttcagcaacttctctcatctttgtaaggattatcgatgatatttcctcagcactaacttgcttctcttgacccttgt 309  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  4678337 tagatatgtttcggcaacttctctcatctttgtaaggatcatcgatgatatttcctcaacactaacttgcttctcttgacccttgt 4678252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 65 - 211
Target Start/End: Complemental strand, 34466731 - 34466585
Alignment:
Q  65 tctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagctttt 164  Q
    |||||||||||  ||||||||||||||||||||||| ||||| ||||||||||| |  |||||||| |||||||| | ||||||||| |  |||||||||    
T  34466731 tctcttgtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatccacagtagctttt 34466632  T
Q  165 cgctgagaatcattgaagtatgcaggcacagtaacaacggcattctt 211  Q
    |||||||||||||| || || |||||||| || | ||| ||||||||    
T  34466631 cgctgagaatcattaaaataagcaggcacggtgataactgcattctt 34466585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 15595329 - 15595414
Alignment:
Q  123 acattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcatt 208  Q
    |||||||| |||||||||||||| |||||||| || |||||||| |||||||||||||  || |||||||| |||||||| |||||    
T  15595329 acattaaggccagcaatggcacctgcatctatagtggcttttcgttgagaatcattgagataagcaggcacggtaacaactgcatt 15595414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 24 - 307
Target Start/End: Complemental strand, 16657496 - 16657213
Alignment:
Q  24 aggtcaaagacaaatatatttcgtttacgatcactttcacttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatga 123  Q
    |||||||||||||| ||||| ||||||| |||||  |||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  16657496 aggtcaaagacaaaaatattccgtttaccatcacaatcacttctcttgtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatga 16657397  T
Q  124 cattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacagacgaagt 223  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||| |||||||| |||| |||       
T  16657396 cattaaggccagcgatggcaccagcatctatggtggcttttcgctgcgaatcattgaagtaagctggcacagtaacaacagcattcttgacaggcgactc 16657297  T
Q  224 tagatatgtttcagcaacttctctcatctttgtaaggattatcgatgatatttcctcagcactaacttgcttctcttgaccctt 307  Q
     | | |||  ||||||||||||| ||||||||||||||| || ||||||||||||||||||| || |||  |||||||||||||    
T  16657296 cataaatgcctcagcaacttctcgcatctttgtaaggatcatagatgatatttcctcagcacaaaattggctctcttgaccctt 16657213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 27 - 208
Target Start/End: Complemental strand, 16661968 - 16661787
Alignment:
Q  27 tcaaagacaaatatatttcgtttacgatcactttcacttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacat 126  Q
    ||||||||||| ||||||| || || |||||  | |||||| |||||||  ||||||||||||||||| ||||| ||||| ||||||||    |  || |    
T  16661968 tcaaagacaaaaatatttctttcaccatcacaattacttcttttgtcaaggccatatgcaatagctgctgcagtgggttcattgattatcctcacaacgt 16661869  T
Q  127 taagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcatt 208  Q
    |||| |||||||||||||||||||| ||||| ||||||||||||||||| || || || ||||| ||||| ||||| |||||    
T  16661868 taaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcgttaaaataagcaggaacagtgacaactgcatt 16661787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 123 - 309
Target Start/End: Original strand, 43625700 - 43625887
Alignment:
Q  123 acattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcac-agacgaa 221  Q
    |||||||| ||  ||||| ||||| |||||||||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||  |  ||     
T  43625700 acattaaggccgacaatgacaccaacatctatggtggcttttcgctgagaatcattgaagtaagcaggcacggtaacaactgcattctttacggggggac 43625799  T
Q  222 gttagatatgtttcagcaacttctctcatctttgtaaggattatcgatgatatttcctcagcactaacttgcttctcttgacccttgt 309  Q
     ||| | || | || ||||| |||| ||||||||| ||||| || || ||||||||||||| || ||   ||||||||||||||||||    
T  43625800 attaaaaatttctctgcaacctctcgcatctttgtgaggatcatagacgatatttcctcaggacaaaaacgcttctcttgacccttgt 43625887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 7542455 - 7542607
Alignment:
Q  64 ttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttt 163  Q
    ||||||||||||  |||||||||| |||||| ||||||||||| || |||      || ||||| || |||||||||||||| |||||||| || |||||    
T  7542455 ttctcttgtcaaggccatatgcaacagctgcggcagtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatctatagtggcttt 7542554  T
Q  164 tcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacag 216  Q
    ||| ||||||||||| || || ||||| ||||||||||| |||||| ||||||    
T  7542555 tcgttgagaatcattaaaataagcaggtacagtaacaactgcattcgtcacag 7542607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 211
Target Start/End: Original strand, 12234881 - 12235065
Alignment:
Q  27 tcaaagacaaatatatttcgtttacgatcactttcacttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacat 126  Q
    ||||| ||||| ||||||||||  | | |||  ||| |||||||||||| ||||||||||| ||| || ||  | |||||||| ||||     || ||||    
T  12234881 tcaaaaacaaaaatatttcgttctccaacacaatcagttctcttgtcaagaccatatgcaacagcggctgccatgggttcgttcattaccctcataacat 12234980  T
Q  127 taagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattctt 211  Q
    | || ||||||||| ||||||||||||| || |||||||| |||||||||||||| || |||||||| |||||||| ||||||||    
T  12234981 tgaggccagcaatgacaccagcatctatagttgcttttcgttgagaatcattgaaataagcaggcacggtaacaactgcattctt 12235065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 211
Target Start/End: Complemental strand, 17716626 - 17716485
Alignment:
Q  70 tgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgctg 169  Q
    ||||||||||||| ||||| ||||||||||| || || || || |||   |||| |||||| |||||||| ||||||||||   | ||||||| || |||    
T  17716626 tgtcaaaaccataagcaatggctgcagcagtgggctcattaataattctcatgaaattaagaccagcaatagcaccagcatgcttagtagcttgtctctg 17716527  T
Q  170 agaatcattgaagtatgcaggcacagtaacaacggcattctt 211  Q
    ||||  ||| ||||| ||||| ||||||||||||||||||||    
T  17716526 agaaaaattaaagtaagcagggacagtaacaacggcattctt 17716485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 65 - 211
Target Start/End: Complemental strand, 12245344 - 12245198
Alignment:
Q  65 tctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagctttt 164  Q
    |||||| ||||  |||||||||| |||||||||||| ||||| || ||||     || ||||| || |||||||| |  ||||||||||| || ||||||    
T  12245344 tctcttttcaaggccatatgcaacagctgcagcagtgggttcattcattaccctcataacattgagaccagcaattgagccagcatctatcgttgctttt 12245245  T
Q  165 cgctgagaatcattgaagtatgcaggcacagtaacaacggcattctt 211  Q
    |||||||||||| | || || ||||| ||||||||||| ||||||||    
T  12245244 cgctgagaatcactaaaataagcaggtacagtaacaacagcattctt 12245198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 253
Target Start/End: Original strand, 14703600 - 14703826
Alignment:
Q  27 tcaaagacaaatatatttcgtttacgatcactttcacttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacat 126  Q
    ||||||||||||||||| ||||  | | ||   ||| ||||||||||||  |||||||||||||||||||| |||||||| || ||||     || ||||    
T  14703600 tcaaagacaaatatattacgttctccaccataatcagttctcttgtcaaggccatatgcaatagctgcagctgtaggttcattcattaccctcataacat 14703699  T
Q  127 taagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacagacgaagttag 226  Q
    | || || |||||  |||||||||| || || |||||||  ||||||||| | || || |||||||| |||||||| |||||||| ||||  ||   ||     
T  14703700 tgaggccggcaataacaccagcatccatagtggcttttctttgagaatcactaaaataagcaggcaccgtaacaactgcattcttaacagttgactctaa 14703799  T
Q  227 atatgtttcagcaacttctctcatctt 253  Q
    |||||| ||||||| ||||| ||||||    
T  14703800 atatgtctcagcaatttctcgcatctt 14703826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 209
Target Start/End: Complemental strand, 17717887 - 17717748
Alignment:
Q  70 tgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgctg 169  Q
    ||||||||||||| ||||| ||||||||||| || || | ||| ||||  ||||||||||| |||||||    | | |||||  | ||| ||| |  |||    
T  17717887 tgtcaaaaccataagcaatggctgcagcagtgggctcatcgataatttccatgacattaagaccagcaaaaagagcggcatccttagtaacttgtatctg 17717788  T
Q  170 agaatcattgaagtatgcaggcacagtaacaacggcattc 209  Q
    ||||||||| ||||| ||||| ||||||||||||||||||    
T  17717787 agaatcattaaagtaagcagggacagtaacaacggcattc 17717748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 17703932 - 17703843
Alignment:
Q  120 atgacattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattc 209  Q
    |||||||||||| |||||||  || |||||||  | ||||||| || |||||||| ||| |||||  |||| ||||||||||| ||||||    
T  17703932 atgacattaagttcagcaataacagcagcatccttagtagcttgtctctgagaattattaaagtaaacagggacagtaacaacagcattc 17703843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 27 - 309
Target Start/End: Original strand, 8659555 - 8659837
Alignment:
Q  27 tcaaagacaaatatatttcgtttacgatcactttcacttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacat 126  Q
    |||||||| || |||||| |||||| |||||  |||| |||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  8659555 tcaaagaccaaaatattttgtttaccatcacagtcacctctcttgtcaaaaccatatgcaatagctgcagcagtaggttcattaattatctgaatgacat 8659654  T
Q  127 taagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacagacgaagttag 226  Q
    |||| |||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||  ||  ||||    
T  8659655 taaggccagcaatggcaccggaatctatggtggcttttcgctgagaatcattgaactatgcaggcactgtaacaacagcattcttcacaggtgacattag 8659754  T
Q  227 atatgtttcagcaacttctctcatctttgtaaggattatcgatgatatttcctcagcactaacttgcttctcttgacccttgt 309  Q
    |||||| || |||||||||| ||| |||||||| |  || |||||||||||||| |||| ||  |||||||| ||||||||||    
T  8659755 atatgtctctgcaacttctcgcatttttgtaagtaccatagatgatatttcctccgcacaaaagtgcttctcctgacccttgt 8659837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 27 - 308
Target Start/End: Complemental strand, 13333432 - 13333151
Alignment:
Q  27 tcaaagacaaatatatttcgtttacgatcactttcacttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacat 126  Q
    ||||||||||| |||||||| |||| |||||  |||| |||||||||||  ||||||||||||||||||||||||||||| ||||||||| |||||| ||    
T  13333432 tcaaagacaaaaatatttcgcttaccatcacaatcacgtctcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatat 13333333  T
Q  127 taagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacagacgaagttag 226  Q
    |||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||| || |  ||    |     
T  13333332 taaggccagcaatagcaccagcatctatggtggcctttcgctgagaatcattgaagtaagccggcacagtaacaacggcattcttgactggtgaccccat 13333233  T
Q  227 atatgtttcagcaacttctctcatctttgtaaggattatcgatgatatttcctcagcactaacttgcttctcttgacccttg 308  Q
    |||||  || ||||| |||| ||||||||||||||  || |||||||||||||| |||| ||  ||||||||||||||||||    
T  13333232 atatgcctctgcaacctctcgcatctttgtaaggaccatagatgatatttcctcggcacaaaagtgcttctcttgacccttg 13333151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 27 - 309
Target Start/End: Original strand, 8667611 - 8667893
Alignment:
Q  27 tcaaagacaaatatatttcgtttacgatcactttcacttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacat 126  Q
    ||||||||||| ||||||||  ||| |||||  ||| ||||||||||||  ||||||||||||||||| ||||||||||| ||||||||  |||||||||    
T  8667611 tcaaagacaaaaatatttcggctaccatcacagtcatttctcttgtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacat 8667710  T
Q  127 taagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacagacgaagttag 226  Q
    ||||||||||||| | ||||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||||||| || | |||    ||    
T  8667711 taagtccagcaatagtaccagcatctatggtggcctttcgctgagaatcattgaagtaagctggcacagtaacaacggcattcttgaccggcgaccccag 8667810  T
Q  227 atatgtttcagcaacttctctcatctttgtaaggattatcgatgatatttcctcagcactaacttgcttctcttgacccttgt 309  Q
    |||||  || ||||| |||| |||||||||||| |  || || |||||||||||||||| ||  |||||||||||||||||||    
T  8667811 atatgcctccgcaacctctcgcatctttgtaagcaccatagaagatatttcctcagcacaaaagtgcttctcttgacccttgt 8667893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 24 - 309
Target Start/End: Original strand, 1301649 - 1301938
Alignment:
Q  24 aggtcaaagacaaatatatttcgtttacgatcactttcacttctcttgtcaaaaccatatgcaatagctgcagcagtag----gttcgttgattatttga 119  Q
    ||||||||||| || ||||| ||||||| |||||  ||||||||||||||||||||||| |||||||||||||||||||    |||| || ||||| |||    
T  1301649 aggtcaaagaccaaaatattccgtttaccatcacagtcacttctcttgtcaaaaccatacgcaatagctgcagcagtagctaggttcattaattatctga 1301748  T
Q  120 atgacattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacagacg 219  Q
    ||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |||||  |||| |  |    
T  1301749 atgacattaaggccagcaattgcaccggcatctatggtggcttttcgctgagaatcattgaaatgtgcaggcacagtaacaacagcatttgtcactggtg 1301848  T
Q  220 aagttagatatgtttcagcaacttctctcatctttgtaaggattatcgatgatatttcctcagcactaacttgcttctcttgacccttgt 309  Q
    |  |||||||||| || |||| ||||| |||||| |||||||  || ||||||||||||||  | | ||  |||||||| ||||||||||    
T  1301849 acattagatatgtctctgcaatttctcgcatcttcgtaaggaccatagatgatatttcctccacgcaaaagtgcttctcctgacccttgt 1301938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 27 - 309
Target Start/End: Complemental strand, 10494350 - 10494068
Alignment:
Q  27 tcaaagacaaatatatttcgtttacgatcactttcacttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacat 126  Q
    ||||||||||| |||||||| ||||  ||||  ||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  10494350 tcaaagacaaaaatatttcggttaccctcacaatcacttctcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacat 10494251  T
Q  127 taagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacagacgaagttag 226  Q
    |||| |||||||| ||||||||||| || ||||| ||||| |||||||| |||||||| || |||||||||||||| |||||||| || |  ||    |     
T  10494250 taaggccagcaatagcaccagcatcaatagtagcctttcgttgagaatcgttgaagtaagccggcacagtaacaacagcattcttgactggtgaccccaa 10494151  T
Q  227 atatgtttcagcaacttctctcatctttgtaaggattatcgatgatatttcctcagcactaacttgcttctcttgacccttgt 309  Q
    |||||  || ||||| |||| ||||||| ||||||  || |||||||||||||| |||| ||  |||||||||||||||||||    
T  10494150 atatgcctctgcaacctctcgcatctttataaggaccatagatgatatttcctcggcacaaaagtgcttctcttgacccttgt 10494068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 27 - 304
Target Start/End: Complemental strand, 8671606 - 8671329
Alignment:
Q  27 tcaaagacaaatatatttcgtttacgatcactttcacttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacat 126  Q
    ||||||||||| |||||||| ||||  ||||  ||| ||||||||||||  ||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  8671606 tcaaagacaaaaatatttcggttaccttcacggtcatttctcttgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacat 8671507  T
Q  127 taagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacagacgaagttag 226  Q
    ||||||||||||| | ||||||||| ||||| ||  |||||||||||||||||||||| || ||||| ||||||||||||||||| || |  ||    ||    
T  8671506 taagtccagcaatagtaccagcatcaatggtggccgttcgctgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggtgactccag 8671407  T
Q  227 atatgtttcagcaacttctctcatctttgtaaggattatcgatgatatttcctcagcactaacttgcttctcttgacc 304  Q
    |||||  || ||||| |||| |||||||||||| |  || || |||||||||||||||| || |||||||||| ||||    
T  8671406 atatgcctccgcaacctctcgcatctttgtaagcaccatagaagatatttcctcagcacaaaattgcttctctagacc 8671329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 62 - 309
Target Start/End: Original strand, 8654677 - 8654924
Alignment:
Q  62 acttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagct 161  Q
    ||||| ||||||||  ||||||||||||||||| ||||||||||| |||| |||  ||||||| |||||||||||||||||||||||||||||||| |||    
T  8654677 acttcgcttgtcaaggccatatgcaatagctgcggcagtaggttcattgagtatccgaatgacgttaagtccagcaatggcaccagcatctatggttgct 8654776  T
Q  162 tttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacagacgaagttagatatgtttcagcaacttctctcatctttgtaagga 261  Q
    ||||||||||| |||||||||||||| ||||||||||||||| |||| || || |  ||    || ||||  || ||||  |||| |||||||||||| |    
T  8654777 tttcgctgagagtcattgaagtatgccggcacagtaacaacgacatttttgacgggtgatccaaggtatgcctctgcaatctctcgcatctttgtaagaa 8654876  T
Q  262 ttatcgatgatatttcctcagcactaacttgcttctcttgacccttgt 309  Q
         ||||||||||||||||||| || ||||||||||||||| ||||    
T  8654877 ccgcagatgatatttcctcagcacaaaattgcttctcttgacctttgt 8654924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 64 - 285
Target Start/End: Original strand, 8647106 - 8647327
Alignment:
Q  64 ttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttt 163  Q
    ||||||||||||  |||||||| | ||| ||||| || ||||| ||||||||  | |||| |||||| ||||||||||| || |||||||| || |||||    
T  8647106 ttctcttgtcaaggccatatgcgagagcagcagctgttggttcattgattatccggatgatattaaggccagcaatggccccggcatctatagtggcttt 8647205  T
Q  164 tcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacagacgaagttagatatgtttcagcaacttctctcatctttgtaaggatt 263  Q
    ||||||| ||||||||||||||||||||||||||||||| |||||||| ||||  ||  ||| |||| | || ||||| |||| ||||||||| |||||     
T  8647206 tcgctgataatcattgaagtatgcaggcacagtaacaactgcattctttacaggggacattaaatatttctctgcaacctctcgcatctttgtgaggatc 8647305  T
Q  264 atcgatgatatttcctcagcac 285  Q
    ||||||||||||||||||||||    
T  8647306 atcgatgatatttcctcagcac 8647327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 27 - 285
Target Start/End: Complemental strand, 8585682 - 8585424
Alignment:
Q  27 tcaaagacaaatatatttcgtttacgatcactttcacttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacat 126  Q
    ||||| ||||| |||||||||| || |||||  | || | | |||||||  ||||||||||||||||||||||| ||||| ||||||||    || ||||    
T  8585682 tcaaacacaaaaatatttcgttcaccatcacagttacctttgttgtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacat 8585583  T
Q  127 taagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacagacgaagttag 226  Q
    |||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| |  ||||  ||  | |     
T  8585582 taaggccagcaatggcaccagcatccatggtggcttttcgctgagaatcattgaaataagcaggcacagtcacaactgcattttgaacaggtgatttcaa 8585483  T
Q  227 atatgtttcagcaa-cttctctcatctttgtaaggattatcgatgatatttcctcagcac 285  Q
    |||||| || |||| ||||| |||| ||||| ||||| || |||||||||||||||||||    
T  8585482 atatgtctctgcaatcttct-tcatgtttgtgaggatgatagatgatatttcctcagcac 8585424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 69 - 309
Target Start/End: Original strand, 8628766 - 8629006
Alignment:
Q  69 ttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgct 168  Q
    |||||||  ||||||||||||||||||||||| || || ||||||||    || |||||||| |||||||||||||||||||  ||||| ||||||||||    
T  8628766 ttgtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaatggcaccagcattcatggtggcttttcgct 8628865  T
Q  169 gagaatcattgaagtatgcaggcacagtaacaacggcattcttcacagacgaagttagatatgtttcagcaa-cttctctcatctttgtaaggattatcg 267  Q
    ||||||||||||| || |||||||| || ||||| ||||| || ||||  ||  | | ||| |  || |||| ||||| |||| |||| |||||| || |    
T  8628866 gagaatcattgaaataagcaggcacggtgacaactgcattttttacaggtgatttcaaataagcctctgcaatcttct-tcatatttgcaaggataatag 8628964  T
Q  268 atgatatttcctcagcactaacttgcttctcttgacccttgt 309  Q
    ||||||||||||||||||  |  | |||||||||||||||||    
T  8628965 atgatatttcctcagcacataggttcttctcttgacccttgt 8629006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 282
Target Start/End: Complemental strand, 8636268 - 8636064
Alignment:
Q  78 ccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcat 177  Q
    ||||| |||| |||||||||||| ||||| ||||||||  |||| |||||||| || |||||||||||||||||| |||| | ||| |||||||||||||    
T  8636268 ccatacgcaaaagctgcagcagttggttcattgattatccgaattacattaaggccggcaatggcaccagcatctttggtggatttacgctgagaatcat 8636169  T
Q  178 tgaagtatgcaggcacagtaacaacggcattcttcacagacgaagttagatatgtttcagcaacttctctcatctttgtaaggattatcgatgatatttc 277  Q
    |||| || || ||||||||||  || |||||||| ||||| ||    |||||||  |||||||  |||| ||||||||| ||||  || || ||||||||    
T  8636168 tgaaataagcgggcacagtaatgactgcattcttgacagatgattccagatatgcctcagcaatctctcgcatctttgtcaggaccatagacgatatttc 8636069  T
Q  278 ctcag 282  Q
    |||||    
T  8636068 ctcag 8636064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 64 - 198
Target Start/End: Original strand, 17268168 - 17268302
Alignment:
Q  64 ttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattat-ttgaatgacattaagtccagcaatggcaccagcatctatggtagctt 162  Q
    |||||||| |||  ||||||||||||||||||||||| ||||| |||||||  || ||| |||||||| ||||||||| |||||||||||||||| ||||    
T  17268168 ttctcttgccaaggccatatgcaatagctgcagcagttggttcattgattaccttcaat-acattaaggccagcaatgacaccagcatctatggtggctt 17268266  T
Q  163 ttcgctgagaatcattgaagtatgcaggcacagtaa 198  Q
    ||||||||||||| |||||||| || || |||||||    
T  17268267 ttcgctgagaatcgttgaagtaagccgggacagtaa 17268302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 3147501 - 3147653
Alignment:
Q  64 ttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttt 163  Q
    |||||||||| |  ||||| ||||||||||||||||||||||| ||||||||  | || | |||||| ||||||||  ||||||||||||| || |||||    
T  3147501 ttctcttgtccagtccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatctattgtcgcttt 3147600  T
Q  164 tcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacag 216  Q
     ||||||| ||||||||| || ||||| || |||||||| |||||||| ||||    
T  3147601 ccgctgagcatcattgaaataagcaggtacggtaacaactgcattcttgacag 3147653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 64 - 208
Target Start/End: Original strand, 6789741 - 6789885
Alignment:
Q  64 ttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttt 163  Q
    ||||||| ||||  |||||||||| ||| ||||| || ||||| ||||||||| | || |||||||| ||||||||||||||||||||||  || |||||    
T  6789741 ttctcttatcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatctaaagtggcttt 6789840  T
Q  164 tcgctgagaatcattgaagtatgcaggcacagtaacaacggcatt 208  Q
     || |||||||||||||| || ||||||||||||| ||| |||||    
T  6789841 ccgttgagaatcattgaaataagcaggcacagtaataactgcatt 6789885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 8602217 - 8602355
Alignment:
Q  78 ccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcat 177  Q
    |||||||||| ||| || ||||| || || ||||||||  | || ||||| || ||||||||||||||||||||| | || |||||||||||||||||||    
T  8602217 ccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatcttttgtggcttttcgctgagaatcat 8602316  T
Q  178 tgaagtatgcaggcacagtaacaacggcattcttcacag 216  Q
    | || || || |||||||||||||| |||||||| ||||    
T  8602317 taaaataagccggcacagtaacaactgcattcttgacag 8602355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 198
Target Start/End: Original strand, 17260470 - 17260604
Alignment:
Q  64 ttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttt 163  Q
    |||||||| |||  ||||||||||||||||||||| ||||||| || ||||  |  |  |||| ||| ||||||||  |||||||||||||||| |||||    
T  17260470 ttctcttgacaaggccatatgcaatagctgcagcaataggttcattaattaacttcaaaacataaaggccagcaataacaccagcatctatggtggcttt 17260569  T
Q  164 tcgctgagaatcattgaagtatgcaggcacagtaa 198  Q
    |||||||||||||||||| || ||||| |||||||    
T  17260570 tcgctgagaatcattgaaataagcaggaacagtaa 17260604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 125 - 309
Target Start/End: Complemental strand, 8640425 - 8640240
Alignment:
Q  125 attaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcac-agacgaagt 223  Q
    |||||| ||||||||||| || ||||||||||| |||||| ||||| ||||||||||||| ||||||| ||||||||| |||||||| ||  |  ||  |    
T  8640425 attaaggccagcaatggccccggcatctatggtggctttttgctgataatcattgaagtaagcaggcatagtaacaactgcattctttacggggggacat 8640326  T
Q  224 tagatatgtttcagcaacttctctcatctttgtaaggattatcgatgatatttcctcagcactaacttgcttctcttgacccttgt 309  Q
    || |||| | || ||||| |||| |||||| | |||||| || |||||||||||||| |||| ||   ||||||||| ||||||||    
T  8640325 taaatatttctctgcaacctctcgcatcttcgaaaggatcatagatgatatttcctcggcacaaaaacgcttctcttcacccttgt 8640240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 8382801 - 8382677
Alignment:
Q  78 ccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcat 177  Q
    |||||||||| ||| || ||||| || || ||||||||  | || ||||| || |||||||| |||||||||||| | || ||||| || ||||||||||    
T  8382801 ccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatcttttgtggctttccgttgagaatcat 8382702  T
Q  178 tgaagtatgcaggcacagtaacaac 202  Q
    |||| ||||||||||| ||||||||    
T  8382701 tgaaatatgcaggcacggtaacaac 8382677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 8590935 - 8591019
Alignment:
Q  132 ccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacag 216  Q
    ||||||||| ||||||||||| |||||||||| | |||||||||||| || || || |||||||||||||| |||||||| ||||    
T  8590935 ccagcaatgacaccagcatctttggtagctttcctctgagaatcattaaaataagctggcacagtaacaactgcattcttgacag 8591019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 211
Target Start/End: Original strand, 39985878 - 39986022
Alignment:
Q  67 tcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcg 166  Q
    ||||||||| |||||| ||||| || |||||||| || || ||||| ||| | ||||||||||| || |||||  | ||||||||  |||||||||  ||    
T  39985878 tcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttgacg 39985977  T
Q  167 ctgagaatcattgaagtatgcaggcacagtaacaacggcattctt 211  Q
    ||| || ||||| ||||| ||||| ||||||||||| ||||||||    
T  39985978 ctgggagtcattaaagtaagcagggacagtaacaacagcattctt 39986022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 27830800 - 27830697
Alignment:
Q  78 ccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcat 177  Q
    |||||||||||||||||||||||||| ||| | |||||  | || |||||||| |||||||||||||| | |||||  || |||||||| ||||| ||||    
T  27830800 ccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaatggcaccggaatctacagtggcttttcgttgagagtcat 27830701  T
Q  178 tgaa 181  Q
    ||||    
T  27830700 tgaa 27830697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 216
Target Start/End: Complemental strand, 7877658 - 7877520
Alignment:
Q  78 ccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcat 177  Q
    ||||||||||  || |||||||| ||||| || |||||  | || ||||| || || ||||  |||||||||||| | || |||||||| ||||||||||    
T  7877658 ccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatcttttgtggcttttcgttgagaatcat 7877559  T
Q  178 tgaagtatgcaggcacagtaacaacggcattcttcacag 216  Q
    |||| || || |||||||||||||| |||||||| ||||    
T  7877558 tgaaataagccggcacagtaacaactgcattcttgacag 7877520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 8538282 - 8538391
Alignment:
Q  81 tatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattga 180  Q
    ||||||| ||| ||||| |||||||| ||||||||  | || ||||| || ||||||||| ||||||||||| |||| ||| ||||||| ||||||||||    
T  8538282 tatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatctttggtggctcttcgctgtgaatcattga 8538381  T
Q  181 agtatgcagg 190  Q
    | || |||||    
T  8538382 aataagcagg 8538391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 8610159 - 8610278
Alignment:
Q  77 accatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatca 176  Q
    ||||||||||| ||| ||||| || ||||| ||||| ||  | || |||||||| |||| |||| ||||||||||| | || ||||| ||||||||||||    
T  8610159 accatatgcaagagccgcagccgttggttcattgataatccggattacattaaggccagaaatgacaccagcatcttttgtggctttccgctgagaatca 8610258  T
Q  177 ttgaagtatgcaggcacagt 196  Q
    || || || |||||||||||    
T  8610259 ttaaaataagcaggcacagt 8610278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 216
Target Start/End: Complemental strand, 29581767 - 29581628
Alignment:
Q  77 accatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatca 176  Q
    |||||||||||  || |||||||| ||||||||||||||    || ||||| || ||||| ||    ||||||||| |||| ||||||||||||||||||    
T  29581767 accatatgcaagtgcagcagcagttggttcgttgattatcctcattacattgaggccagctataatgccagcatctttggtggcttttcgctgagaatca 29581668  T
Q  177 ttgaagtatgcaggcacagtaacaacggcattcttcacag 216  Q
    ||||| || |||||||| ||||  || |||||||| ||||    
T  29581667 ttgaaataagcaggcacggtaatcactgcattctttacag 29581628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 84 - 216
Target Start/End: Complemental strand, 8017332 - 8017200
Alignment:
Q  84 gcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagt 183  Q
    |||||||||||||| || || |||||||| |||   |  ||||| ||||| |||||| |||| |||||  | || ||||  ||||| |||||||||||||    
T  8017332 gcaatagctgcagctgttggctcgttgataattctcaaaacattgagtcctgcaatgacaccggcatcctttgtggcttgacgctgcgaatcattgaagt 8017233  T
Q  184 atgcaggcacagtaacaacggcattcttcacag 216  Q
    | || || || ||||||||||||||||||||||    
T  8017232 aagctggaactgtaacaacggcattcttcacag 8017200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 8102974 - 8103043
Alignment:
Q  142 caccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattctt 211  Q
    ||||||||||| | || ||||  |||||||||||||||||||| ||||| ||||| || |||||||||||    
T  8102974 caccagcatctttagttgcttgacgctgagaatcattgaagtaagcagggacagtgacgacggcattctt 8103043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 8559576 - 8559676
Alignment:
Q  78 ccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcat 177  Q
    |||||||||| ||| || ||||| ||||| |||||||| || || |||||||| ||||||||  |||| |||||| |||| ||| |||  ||||||||||    
T  8559576 ccatatgcaagagcagctgcagttggttcattgattatctgcattacattaagaccagcaatttcacctgcatctttggtggctcttctttgagaatcat 8559675  T
Q  178 t 178  Q
    |    
T  8559676 t 8559676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 29577594 - 29577491
Alignment:
Q  78 ccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcat 177  Q
    ||||||||||  || |||||||| ||||| ||||||||  | || ||||| || ||||||||    || |||||| |||| |||||||||||||||||||    
T  29577594 ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaataatgccggcatctttggtggcttttcgctgagaatcat 29577495  T
Q  178 tgaa 181  Q
    ||||    
T  29577494 tgaa 29577491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 27 - 309
Target Start/End: Complemental strand, 9335867 - 9335585
Alignment:
Q  27 tcaaagacaaatatatttcgtttacgatcactttcacttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacat 126  Q
    ||||||||||| |||||||| |||| |||||  ||| ||||||| ||||  ||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  9335867 tcaaagacaaaaatatttcggttaccatcacagtcatttctcttatcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacat 9335768  T
Q  127 taagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacagacgaagttag 226  Q
    |||| |||||||| | ||||||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||||||||| || | |||    |     
T  9335767 taaggccagcaatagtaccagcatctatggtggcctttcgctgagaatcattgaagtaagctggcacggtaacaacggcattcttgaccggcgaccccaa 9335668  T
Q  227 atatgtttcagcaacttctctcatctttgtaaggattatcgatgatatttcctcagcactaacttgcttctcttgacccttgt 309  Q
    |||||  || ||||| ||||||||||||||||| |  || || |||||||||||||||| ||  |||||||||||||||||||    
T  9335667 atatgcctccgcaacctctctcatctttgtaagcaacatagaagatatttcctcagcacaaaagtgcttctcttgacccttgt 9335585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 65 - 196
Target Start/End: Original strand, 30775482 - 30775613
Alignment:
Q  65 tctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagctttt 164  Q
    |||||| ||||  ||||||||||||||||| ||||| || || || ||||||   || |||||||| |||||||||||||||||||| || || ||||||    
T  30775482 tctcttctcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatccatagtggctttt 30775581  T
Q  165 cgctgagaatcattgaagtatgcaggcacagt 196  Q
    ||||| | ||||||||| || |||||||||||    
T  30775582 cgctgtgcatcattgaaataagcaggcacagt 30775613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 65 - 216
Target Start/End: Original strand, 35132678 - 35132829
Alignment:
Q  65 tctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagctttt 164  Q
    |||||||||||  ||||||||||  ||||| ||||||||||| || |||| |   || |||||  | |||||||| |||||||||||||| || ||||||    
T  35132678 tctcttgtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatctatagtggctttt 35132777  T
Q  165 cgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacag 216  Q
    || ||||||||| | || || ||||||||||||||||| |||||||| ||||    
T  35132778 cgttgagaatcactaaaataagcaggcacagtaacaactgcattcttaacag 35132829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 211
Target Start/End: Complemental strand, 23596521 - 23596377
Alignment:
Q  67 tcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcg 166  Q
    |||| |||| |||||| |||||||| |||||||| || ||||| || |||   || ||||| ||||||| |||| ||||||||||  | |||||||  ||    
T  23596521 tcttatcaagaccataagcaatagcggcagcagtgggctcgttaataattctcatcacattgagtccagaaatgacaccagcatccttagtagcttgacg 23596422  T
Q  167 ctgagaatcattgaagtatgcaggcacagtaacaacggcattctt 211  Q
     || ||||| ||||||||||||||||| || ||||||||||||||    
T  23596421 ttgtgaatcgttgaagtatgcaggcacggttacaacggcattctt 23596377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 211
Target Start/End: Complemental strand, 23587669 - 23587525
Alignment:
Q  67 tcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcg 166  Q
    |||| |||| |||||| |||||||| ||||| |||||||| || || |||   |  ||||| ||||||| |||| |||| |||||| | |||||||  ||    
T  23587669 tcttatcaagaccataagcaatagcagcagcggtaggttcattaataattctcaacacattgagtccagaaatgacaccggcatcttttgtagcttgacg 23587570  T
Q  167 ctgagaatcattgaagtatgcaggcacagtaacaacggcattctt 211  Q
     || ||||| |||||||| ||||||||||| ||||||||||||||    
T  23587569 ttgtgaatcgttgaagtaagcaggcacagttacaacggcattctt 23587525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 54396729 - 54396802
Alignment:
Q  141 gcaccagcatctatggtagcttttcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcac 214  Q
    |||||||||||| | |||||||  || |||||||||||||| || ||||| ||||||||||| |||||||||||    
T  54396729 gcaccagcatctttcgtagcttgacgttgagaatcattgaaataagcaggaacagtaacaacagcattcttcac 54396802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 43745078 - 43745228
Alignment:
Q  64 ttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttt 163  Q
    ||||||| || | |||||||||||||||||||||||| ||||| |||||||| |  || |||| ||| ||||||||||||||||||||||  || |||||    
T  43745078 ttctcttttccagaccatatgcaatagctgcagcagtgggttcattgattatcttcataacatcaagcccagcaatggcaccagcatcta--gtggcttt 43745175  T
Q  164 tcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacag 216  Q
     |||||| |||||||||| || || |||||||||||||| |||||||| ||||    
T  43745176 ccgctgataatcattgaaataagccggcacagtaacaactgcattcttgacag 43745228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 12528747 - 12528885
Alignment:
Q  78 ccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttttcgctgagaatcat 177  Q
    |||||||||| ||| || ||||| ||||||||||||||  | || ||||| || ||||||||| ||||||||||  |||| |||  |||||| |||||||    
T  12528747 ccatatgcaagagcagctgcagttggttcgttgattatccgtattacattgaggccagcaatgacaccagcatccttggtggctcgtcgctgcgaatcat 12528846  T
Q  178 tgaagtatgcaggcacagtaacaacggcattcttcacag 216  Q
    |||| || || ||||| ||||  || |||||||| ||||    
T  12528847 tgaaatacgctggcaccgtaatcactgcattcttaacag 12528885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 28220180 - 28220332
Alignment:
Q  64 ttctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagcttt 163  Q
    |||| ||||| || |||||||||||||| |||||||| ||||| |||| |||    |  ||||| || |||||||||| ||| ||||||||||| |||||    
T  28220180 ttcttttgtccaatccatatgcaatagcagcagcagtgggttcattgactatccttagaacatttagaccagcaatggtacctgcatctatggtggcttt 28220279  T
Q  164 tcgctgagaatcattgaagtatgcaggcacagtaacaacggcattcttcacag 216  Q
     |||||| |||||||||| || ||||||||||||| ||| |||||||| ||||    
T  28220280 ccgctgataatcattgaaataagcaggcacagtaataactgcattcttgacag 28220332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 28910812 - 28910958
Alignment:
Q  65 tctcttgtcaaaaccatatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaagtccagcaatggcaccagcatctatggtagctttt 164  Q
    ||||||||| |  ||||||| ||||||| |||||||  | || ||||||||  | || |||||||| |   |||||||||||||||||||||| |||||     
T  28910812 tctcttgtcgaggccatatgaaatagctacagcagtgagctcattgattatccgcataacattaagcctgacaatggcaccagcatctatggtggctttc 28910911  T
Q  165 cgctgagaatcattgaagtatgcaggcacagtaacaacggcattctt 211  Q
    | || |||||||||||| ||  ||| || ||||||||  ||||||||    
T  28910912 ctctaagaatcattgaaataaccagtcaaagtaacaattgcattctt 28910958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 11314659 - 11314610
Alignment:
Q  80 atatgcaatagctgcagcagtaggttcgttgattatttgaatgacattaa 129  Q
    ||||||||| ||||||||| ||||||| ||||||||||| ||||||||||    
T  11314659 atatgcaatggctgcagcactaggttcattgattatttgcatgacattaa 11314610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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