View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16659_low_12 (Length: 316)
Name: NF16659_low_12
Description: NF16659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16659_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 38086280 - 38085990
Alignment:
| Q |
14 |
aggcatggggtttcaaattttggtattgacatattttctagtggctttggctgttattcaacacgttggtgctaacattgatgctggtttcgttcaaaga |
113 |
Q |
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| T |
38086280 |
aggcatggggtttcaaattttggtattgacatattttctagtggctttggctgttattcaacacgttggtgctaacattgatgctggtttcgttcaaaga |
38086181 |
T |
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| Q |
114 |
aaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctactggttgatgacaatggcatctgacccatctacaagggtca |
213 |
Q |
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| T |
38086180 |
aaaggaacacattttattctcaatgggaagacacactatgtgaatggattcaattcctattggttaacaaccatggcatctgatccatctacaagttcta |
38086081 |
T |
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| Q |
214 |
aggtcacgtccaattttcaacaagcttctcaacatggtttaaatgtaggaagaacattggctttcaacgatggatattataaacctcttca |
304 |
Q |
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| T |
38086080 |
aggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaagaacatgggctttcaatgatggaggttataaagctcttca |
38085990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 99 - 304
Target Start/End: Complemental strand, 38142996 - 38142791
Alignment:
| Q |
99 |
ggtttcgttcaaagaaaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctactggttgatgacaatggcatctgacc |
198 |
Q |
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| T |
38142996 |
ggtttcgttcaaagaaaaggtactcattttattctgaatggaaagacacactatgtgaatggattcaattcctactggttgatgacaatggcatctgacc |
38142897 |
T |
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| Q |
199 |
catctacaagggtcaaggtcacgtccaattttcaacaagcttctcaacatggtttaaatgtaggaagaacattggctttcaacgatggatattataaacc |
298 |
Q |
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| T |
38142896 |
catctacaagggtcaaggtcacgtccaattttcaacaagcttctcaacatggtttaaatgtgggaagaacattggctttcaacgatggagattataaacc |
38142797 |
T |
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| Q |
299 |
tcttca |
304 |
Q |
| |
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|||||| |
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| T |
38142796 |
tcttca |
38142791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 86 - 304
Target Start/End: Complemental strand, 38156323 - 38156105
Alignment:
| Q |
86 |
taacattgatgctggtttcgttcaaagaaaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctactggttgatgaca |
185 |
Q |
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| T |
38156323 |
taacgttggtgccggtttcgttcaaagaaaaggcactcattttattttaaatgggaagccatattacttgaatggattcaattcctactggttgatgaca |
38156224 |
T |
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| Q |
186 |
atggcatctgacccatctacaagggtcaaggtcacgtccaattttcaacaagcttctcaacatggtttaaatgtaggaagaacattggctttcaacgatg |
285 |
Q |
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| T |
38156223 |
atggcatctgacccatctacaagggtcaaggtcacgtccaattttcaacaagcttctcaacatggtttaaatgtgggaagaacatgggctttcaacgatg |
38156124 |
T |
|
| Q |
286 |
gatattataaacctcttca |
304 |
Q |
| |
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|| ||| |||||||||||| |
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| T |
38156123 |
gagattctaaacctcttca |
38156105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 99 - 304
Target Start/End: Complemental strand, 38112015 - 38111810
Alignment:
| Q |
99 |
ggtttcgttcaaagaaaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctactggttgatgacaatggcatctgacc |
198 |
Q |
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|||||||||||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||| |
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| T |
38112015 |
ggtttcgttcaaagaaaaggtactcattttattctgaatggaaagacacactatgtgaatggattcaattcctattggttaatgatcatggcatctgacc |
38111916 |
T |
|
| Q |
199 |
catctacaagggtcaaggtcacgtccaattttcaacaagcttctcaacatggtttaaatgtaggaagaacattggctttcaacgatggatattataaacc |
298 |
Q |
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| T |
38111915 |
catctacaagttctaaggtcacttcaaatttccaacaagcttctcgacatggtttaaatgtaggaagaacatgggcttgcaacgatggaggttataaagc |
38111816 |
T |
|
| Q |
299 |
tcttca |
304 |
Q |
| |
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|||||| |
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| T |
38111815 |
tcttca |
38111810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 98 - 287
Target Start/End: Complemental strand, 38091776 - 38091587
Alignment:
| Q |
98 |
tggtttcgttcaaagaaaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctactggttgatgacaatggcatctgac |
197 |
Q |
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||||||||||||||||||||||| |||||| || |||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||| ||||| |
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| T |
38091776 |
tggtttcgttcaaagaaaaggaatccattttcttatgaatgggaagacacactatgtgaatggattcaattcccactggttgatgattatggcagctgac |
38091677 |
T |
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| Q |
198 |
ccatctacaagggtcaaggtcacgtccaattttcaacaagcttctcaacatggtttaaatgtaggaagaacattggctttcaacgatgga |
287 |
Q |
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| T |
38091676 |
ctatctacaagacccaaagttacatctgcatttcaacaagcttcacaacatggtttaaatgtaggaagaacatgggctttcaatgatgga |
38091587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 38091866 - 38091807
Alignment:
| Q |
14 |
aggcatggggtttcaaattttggtattgacatattttctagtggctttggctgttattcaaca |
76 |
Q |
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|||||||||||||||||||||||||| ||| ||| || ||| || |||||||||||||||| |
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| T |
38091866 |
aggcatggggtttcaaattttggtatggac---tttccttgtgactctggctgttattcaaca |
38091807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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