View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16659_low_13 (Length: 285)
Name: NF16659_low_13
Description: NF16659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16659_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 679251 - 679517
Alignment:
| Q |
1 |
tacgcagcattcttctaattctaagaactagaaagnnnnnnnnnn-tgaaaatgaggcatataactatatttcaaactcactataagttttagaaagcta |
99 |
Q |
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| T |
679251 |
tacgcagcattcttctaattctcagaactagaaagaaaaaaaaaaatgaaaatgaggcatataactacatttcaaactcactataagttttagaaagcta |
679350 |
T |
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| Q |
100 |
aatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaacatatagtgcg |
199 |
Q |
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| T |
679351 |
aatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaacatatagtgcg |
679450 |
T |
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| Q |
200 |
ctgattttagaactgcagggtttggagaattgaaataatgtgggatgccctctattcttgtccaata |
266 |
Q |
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| T |
679451 |
ctgattttagaactgcagggtttggagaattgaaataatgtgggatgccctctattcttgtccaata |
679517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 751058 - 751290
Alignment:
| Q |
1 |
tacgcagcattcttctaattctaagaactagaaagnnnnnnnnnntgaaaatgaggcatataactatatttcaaactcactataagttttagaaagctaa |
100 |
Q |
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| T |
751058 |
tacgcagcattcttctaattctaagaactagaaa--aaaaataaatgaaaatgaggcatagaactatatttcaaactcactataagttttagaaagctaa |
751155 |
T |
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| Q |
101 |
atgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaacatatagtgcgc |
200 |
Q |
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| T |
751156 |
atgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaacatatagtgcgc |
751255 |
T |
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| Q |
201 |
tgattttagaactgcagggtttggagaattgaaat |
235 |
Q |
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| T |
751256 |
tgattttagaactgcagggtttggagaattgaaat |
751290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 233
Target Start/End: Complemental strand, 2632659 - 2632504
Alignment:
| Q |
73 |
aaactcactataagttttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaa |
172 |
Q |
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||||||||||||||||| | |||||||||| | ||||| || | ||||||||||||| ||||| |||||||||| ||||| | |||| |||||||| |
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| T |
2632659 |
aaactcactataagtttcaaaaagctaaatat---gaattattcacacacatgtgaagtgtatga--ctatgataatacaaagaacgagtggtgaaagaa |
2632565 |
T |
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| Q |
173 |
t----ctgatcttcacaaaacatatagtgcgctgattttagaactgcagggtttggagaattgaa |
233 |
Q |
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||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |
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| T |
2632564 |
aagacctgatcttcacaaaacaa----tgtgctgattttaaaactgcagggtttggagaattgaa |
2632504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 747402 - 747435
Alignment:
| Q |
233 |
aataatgtgggatgccctctattcttgtccaata |
266 |
Q |
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|||||||||||||||||||||||||| ||||||| |
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| T |
747402 |
aataatgtgggatgccctctattcttttccaata |
747435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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