View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16659_low_14 (Length: 282)
Name: NF16659_low_14
Description: NF16659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16659_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 38086280 - 38086029
Alignment:
| Q |
14 |
aggcatggggtttcaaattttggtattgacatattttctagtggctttggctgttattcaacacgttggtgctaacattgatgctggtttcgttcaaaga |
113 |
Q |
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| T |
38086280 |
aggcatggggtttcaaattttggtattgacatattttctagtggctttggctgttattcaacacgttggtgctaacattgatgctggtttcgttcaaaga |
38086181 |
T |
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| Q |
114 |
aaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctattggttaacaaccatggcatctgatccatctacaagttcta |
213 |
Q |
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| T |
38086180 |
aaaggaacacattttattctcaatgggaagacacactatgtgaatggattcaattcctattggttaacaaccatggcatctgatccatctacaagttcta |
38086081 |
T |
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| Q |
214 |
aggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaag |
265 |
Q |
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| T |
38086080 |
aggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaag |
38086029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 99 - 265
Target Start/End: Complemental strand, 38112015 - 38111849
Alignment:
| Q |
99 |
ggtttcgttcaaagaaaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctattggttaacaaccatggcatctgatc |
198 |
Q |
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| T |
38112015 |
ggtttcgttcaaagaaaaggtactcattttattctgaatggaaagacacactatgtgaatggattcaattcctattggttaatgatcatggcatctgacc |
38111916 |
T |
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| Q |
199 |
catctacaagttctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaag |
265 |
Q |
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| T |
38111915 |
catctacaagttctaaggtcacttcaaatttccaacaagcttctcgacatggtttaaatgtaggaag |
38111849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 99 - 265
Target Start/End: Complemental strand, 38142996 - 38142830
Alignment:
| Q |
99 |
ggtttcgttcaaagaaaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctattggttaacaaccatggcatctgatc |
198 |
Q |
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| T |
38142996 |
ggtttcgttcaaagaaaaggtactcattttattctgaatggaaagacacactatgtgaatggattcaattcctactggttgatgacaatggcatctgacc |
38142897 |
T |
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| Q |
199 |
catctacaagttctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaag |
265 |
Q |
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| T |
38142896 |
catctacaagggtcaaggtcacgtccaattttcaacaagcttctcaacatggtttaaatgtgggaag |
38142830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 86 - 265
Target Start/End: Complemental strand, 38156323 - 38156144
Alignment:
| Q |
86 |
taacattgatgctggtttcgttcaaagaaaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctattggttaacaacc |
185 |
Q |
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|||| ||| ||| |||||||||||||||||||| || ||||||||| | |||||||| || | || ||||||||||||||||||| ||||| | || |
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| T |
38156323 |
taacgttggtgccggtttcgttcaaagaaaaggcactcattttattttaaatgggaagccatattacttgaatggattcaattcctactggttgatgaca |
38156224 |
T |
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| Q |
186 |
atggcatctgatccatctacaagttctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaag |
265 |
Q |
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| T |
38156223 |
atggcatctgacccatctacaagggtcaaggtcacgtccaattttcaacaagcttctcaacatggtttaaatgtgggaag |
38156144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 265
Target Start/End: Complemental strand, 38091776 - 38091609
Alignment:
| Q |
98 |
tggtttcgttcaaagaaaaggaacacattttattctgaatgggaaaacacactatgtgaatggattcaattcctattggttaacaaccatggcatctgat |
197 |
Q |
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| T |
38091776 |
tggtttcgttcaaagaaaaggaatccattttcttatgaatgggaagacacactatgtgaatggattcaattcccactggttgatgattatggcagctgac |
38091677 |
T |
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| Q |
198 |
ccatctacaagttctaaggtcacttccacttttcaacaagcttctcaacatggtttaaatgtaggaag |
265 |
Q |
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| T |
38091676 |
ctatctacaagacccaaagttacatctgcatttcaacaagcttcacaacatggtttaaatgtaggaag |
38091609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 38091866 - 38091807
Alignment:
| Q |
14 |
aggcatggggtttcaaattttggtattgacatattttctagtggctttggctgttattcaaca |
76 |
Q |
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| T |
38091866 |
aggcatggggtttcaaattttggtatggac---tttccttgtgactctggctgttattcaaca |
38091807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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