View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16659_low_16 (Length: 233)
Name: NF16659_low_16
Description: NF16659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16659_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 1210658 - 1210420
Alignment:
| Q |
1 |
attggttaaacacttgtaatgtttcattatattgtggaaaattacttcaagtgaatattgatttgttgcataccaactattctttgatagaacttctttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1210658 |
attggttaaacacttgtaatgtttcattatattgtggaaaattacttcaagtgaatattgatttgttgcataccaactattctttgatagaacttctttc |
1210559 |
T |
|
| Q |
101 |
tttgatttctcaataatcttaggtcctacg---------------------cacatattttcccacttctgtagagagtggcatcctttcaacaaatcca |
179 |
Q |
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||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1210558 |
tttgatttctcaataatctcaagtcctacgcctaagtttgataagaaaacacacatattttcccacttctgtagagagtggcatcctttcaacaaatcca |
1210459 |
T |
|
| Q |
180 |
cattgaatctagcaggaagatcataaatatagatatatt |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
1210458 |
cattgaatctagcaggaagatcataaatatagatatatt |
1210420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 41947904 - 41947666
Alignment:
| Q |
1 |
attggttaaacacttgtaatgtttcattatattgtggaaaattacttcaagtgaatattgatttgttgcataccaactattctttgatagaacttctttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||| |
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| T |
41947904 |
attggttaaacacttgtaatgtttcattatattgtggaaaattacttcaagtgaatattgatttgttgcataccaatttttctttgatagcacttctttt |
41947805 |
T |
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| Q |
101 |
tttgatttctcaataatcttaggtcct---------------------acgcacatattttcccacttctgtagagagtggcatcctttcaacaaatcca |
179 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41947804 |
tttgatttctcaataatcttaggtcctacacctaagtttgataagaaaacacacatattttcccacttctgtagagagtggcatcctttcaacaaatcct |
41947705 |
T |
|
| Q |
180 |
cattgaatctagcaggaagatcataaatatagatatatt |
218 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| |
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| T |
41947704 |
cattgaatctagcaggaagatcataaacatagatatatt |
41947666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 41942390 - 41942154
Alignment:
| Q |
1 |
attggttaaacacttgtaatgtttcattatattgtggaaaattacttcaagtgaatattgatttgttgcataccaactattctttgatagaacttctttc |
100 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| |||| |||| |
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| T |
41942390 |
attggttaaacacttgtaatgtttcattgtgttgtggaaaattacttcaagggaaaattgatttgttgcataccaactcttctttgatagcacttttttc |
41942291 |
T |
|
| Q |
101 |
tttgatttctcaataatcttaggtcct---------------------acgcacatattttcccacttctgtagagagtggcatcctttcaacaaatcca |
179 |
Q |
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|||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41942290 |
tttgttttctcaataatcttaggtcctacacctaagtttgataggtaaacacacatattttcccacttctgtagagagtggcatcctttcaacaaatcct |
41942191 |
T |
|
| Q |
180 |
cattgaatctagcaggaagatcataaatatagatata |
216 |
Q |
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||||||||||||||||||||||||||| ||||||||| |
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| T |
41942190 |
cattgaatctagcaggaagatcataaacatagatata |
41942154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 22794404 - 22794277
Alignment:
| Q |
1 |
attggttaaacacttgtaatgtttcattatattgtggaaaattacttcaagtgaatattgatttgttgcataccaactattctttgatagaacttctttc |
100 |
Q |
| |
|
|||||||||||||||||| | ||||||||| ||||| |||||||||||||||||| |||||| ||||||||||||| | |||||||| | ||| || |
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| T |
22794404 |
attggttaaacacttgtagtctttcattatgttgtgaaaaattacttcaagtgaaaattgatgtgttgcataccaatttttctttgaaataacagtttca |
22794305 |
T |
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| Q |
101 |
tttgatttctcaataatcttaggtccta |
128 |
Q |
| |
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||||||| ||||||||||||||| |||| |
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| T |
22794304 |
tttgattcctcaataatcttaggcccta |
22794277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 54180739 - 54180866
Alignment:
| Q |
1 |
attggttaaacacttgtaatgtttcattatattgtggaaaattacttcaagtgaatattgatttgttgcataccaactattctttgatag-aacttcttt |
99 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||| | ||||||||||| | ||||||| |
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| T |
54180739 |
attggttaaacacttgtaatgtttcatcaagttgtggaaaattacttctagtgaaaattgatttgttgcataccaattcttctttgatagcaccttcttt |
54180838 |
T |
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| Q |
100 |
ctttgatttctcaataatcttaggtccta |
128 |
Q |
| |
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||||||| |||||||||||||||||||| |
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| T |
54180839 |
-tttgattcctcaataatcttaggtccta |
54180866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 16913693 - 16913763
Alignment:
| Q |
149 |
tgtagagagtggcatcctttcaacaaatccacattgaatctagcaggaagatcataaatatagatatatttg |
220 |
Q |
| |
|
||||||||| |||||| |||||||||||| ||||||||||||| |||| |||||||| ||||||||||||| |
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| T |
16913693 |
tgtagagagaggcatc-tttcaacaaatcatcattgaatctagcgggaacatcataaacatagatatatttg |
16913763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 219
Target Start/End: Original strand, 22535972 - 22536059
Alignment:
| Q |
131 |
cacatattttcccacttctgtagagagtggcatcctttcaacaaatccacattgaatctagcaggaagatcataaatatagatatattt |
219 |
Q |
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||||||||||||||||| ||||||||| |||||| | ||||||||| |||||||| ||| |||||||||||||| ||||||| |||| |
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| T |
22535972 |
cacatattttcccacttttgtagagagcggcatcaat-caacaaatcatcattgaatatagtaggaagatcataaagatagataaattt |
22536059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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