View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16659_low_4 (Length: 549)
Name: NF16659_low_4
Description: NF16659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16659_low_4 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 7 - 549
Target Start/End: Original strand, 2021462 - 2022004
Alignment:
| Q |
7 |
agtagtataattgtctctattttatttttgttctgcaggtgagggaagaaattattatctgaaaaactgattatctttttaccgctaatcttgtttagtg |
106 |
Q |
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|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2021462 |
agtagtttaattgtctctattttttttttgttctgcaggtgagggaagaaattattatctgaaaaactgattatctatttaccgctaatcttgtttagtg |
2021561 |
T |
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| Q |
107 |
tttgtgccattgtctgtacatttctgtcacttgcattatctaaatttgaaataattgatttttctctgtagaatggacacggtaagaaaacgttgtcctg |
206 |
Q |
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| T |
2021562 |
tttgtgccattgtctgtacatttctgtcacttgcattatctaaatttgaaataattgatttttctctgtagaatggacacgttaagaaaacgtcttcctg |
2021661 |
T |
|
| Q |
207 |
tttctagttatgagggattaattgaacttcagaggattgttcaaaggtttgaagataagacttacacttctgcgacaagcaaggtacattcattacgagt |
306 |
Q |
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| T |
2021662 |
tttctagttatgagggattaattgaacttcagaagattgctcaaaggtttgaagataagatttacacttctgcgacaagcaaggtacattcattacgagt |
2021761 |
T |
|
| Q |
307 |
attgtgctgcctccactttcattcattgttactcatgaaactatgttgtattgtagtatatatcaatacagcctactgttgctgcctataacctatagaa |
406 |
Q |
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| T |
2021762 |
attgtgctgcctccactttcattgattgttactcatgaaattatgttgtattgtagtatatatcaatacagcctactgttgctgcctataacctatagaa |
2021861 |
T |
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| Q |
407 |
tagcagtcctaacaaccagttattctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacctaatcat |
506 |
Q |
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| T |
2021862 |
tagcagtcctaagaaacagttgttctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacgtaatcat |
2021961 |
T |
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| Q |
507 |
aaccaacttttgatcaataaagaatattcatattctctttctc |
549 |
Q |
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| T |
2021962 |
aaccaacttttgatcaataaagaatattcatattctctttctc |
2022004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 37 - 549
Target Start/End: Original strand, 1989934 - 1990430
Alignment:
| Q |
37 |
ttctgcaggtgagggaagaaattattatctgaaaaactgattatctttttaccgctaatcttgtttagtgtttgtgccattgtctgtacatttctgtcac |
136 |
Q |
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| T |
1989934 |
ttctgcaggtgtgggaataaataattatctgacaaa--gattatctttttaccgctaatcttgtt--gtgtttgtgccattgtctgaacatctctgtcac |
1990029 |
T |
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| Q |
137 |
ttgcattatctaaatttgaaataattgatttttctctgtagaatggacacggtaagaaaacgttgtcctgtttctagttatgagggattaattgaacttc |
236 |
Q |
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| T |
1990030 |
ttgcactatctaaatttgaagtaattgcttttcctttgtagaatggacacgttaagaaaatatcatcctatttctggttctgagggattacttgaacttc |
1990129 |
T |
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| Q |
237 |
agaggattgttcaaaggtttgaagataagacttacacttctgcgacaagcaaggtacattcattacgagtattgtgctgcctccactttcattcattgtt |
336 |
Q |
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|| | ||| |||||||||||||||||||| || ||| |||| ||||| |||||||||||||||||||||||||| | |||||||||||||||| ||| |
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| T |
1990130 |
ggaagcttgctcaaaggtttgaagataagatctatactgatgcggcaagccaggtacattcattacgagtattgtgcagtctccactttcattcatggtt |
1990229 |
T |
|
| Q |
337 |
actcatgaaactatgttgtattgtagtatatatcaatacagcctactgttgctgcctataacctatagaatagcagtcctaacaaccagttattctcatt |
436 |
Q |
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| T |
1990230 |
attcgtgaaactatgttgtattgtagtatatatcaatacagcctactttagctgtgtataacctataaaataacagtcctaacaaacagttattctcatt |
1990329 |
T |
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| Q |
437 |
gtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacctaatcataaccaacttttgatcaataaagaatattca |
536 |
Q |
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| T |
1990330 |
gtaacgaactgaatcaaataagttagagggatttgatc------------aattatcatcacgtaatcataaccaacttttgatcaataaagaatattca |
1990417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 129 - 377
Target Start/End: Original strand, 2035773 - 2036022
Alignment:
| Q |
129 |
tctgtcacttgcattatctaaatttgaaataattgatttttctctgtagaatggacacggtaagaaaacgttgtcctgtttctagttatgagggattaat |
228 |
Q |
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| T |
2035773 |
tctgtcacttgcactatctaa-tttgaaataattgcttttcctttgtagaatggacacattaagaaaacatcttcccgtttctggttctgagggattgct |
2035871 |
T |
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| Q |
229 |
tgaacttcagaggattgttcaaaggtttgaagataagacttacacttctgcgacaagcaaggtacattcattacgagtattgtgctgcctccactttcat |
328 |
Q |
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| T |
2035872 |
tgaacttcggaagattgctcaaaggtttgaagataagatttatactgctgcgacaagccaggtacattcattacgagtattgtgcagtctccactttcat |
2035971 |
T |
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| Q |
329 |
tcat--tgttactcatgaaactatgttgtattgtagtatatatcaatacag |
377 |
Q |
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| T |
2035972 |
tcatggtgttactcatgaagctatgttgtattgtagtatatatcaatacag |
2036022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 119 - 485
Target Start/End: Original strand, 2018942 - 2019313
Alignment:
| Q |
119 |
tctgtacatttctgtcacttgcattatctaaatttgaaataattgatttttctctgtagaatggacacggtaagaaaacgttgtcctgtttctagttatg |
218 |
Q |
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| T |
2018942 |
tctgaacatctctgtcagttgcattatctcaatttgaaataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccg |
2019041 |
T |
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| Q |
219 |
agggattaattgaacttcagaggattgttcaaaggtttgaagataagacttacacttctgcgacaagcaaggtacattcattacgagtattgtgctgcct |
318 |
Q |
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| T |
2019042 |
agggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccgcgacaagccaggtacattcattaccagtattgtgcagcct |
2019141 |
T |
|
| Q |
319 |
ccactttcattcattgttactcatgaaactatgttgtattgtagtatatatcaatacagcctactgttgctgcctataacctatagaatagcagtcctaa |
418 |
Q |
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| T |
2019142 |
ccactcttattcatggttacgcatgctactatgttgtattgcagtataga--aatatagcctattgtagctgtgtatagcctgtagaataacagctctca |
2019239 |
T |
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| Q |
419 |
caaccagttattctca-------ttgtaactaactgaatcaaataagttagagggatttgacctttatagatac |
485 |
Q |
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| T |
2019240 |
catctacctagtctaagagagatttctaactaactgaatcaaatcagttagagggatttgacctctataaatac |
2019313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 423 - 546
Target Start/End: Original strand, 2036020 - 2036131
Alignment:
| Q |
423 |
cagttattctcattgtaactaactgaatcaaataagttagagggatttgacctttatagatactaattatcatcacctaatcataaccaacttttgatca |
522 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||||| |
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| T |
2036020 |
cagttattctcattgtaacgaactgaatcaaataagttagagggatttgatc------------aattaccatcacgtaatcataaccaacttttgatca |
2036107 |
T |
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| Q |
523 |
ataaagaatattcatattctcttt |
546 |
Q |
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|||||||||||||||||||||||| |
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| T |
2036108 |
ataaagaatattcatattctcttt |
2036131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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