View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16659_low_5 (Length: 467)
Name: NF16659_low_5
Description: NF16659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16659_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 3863415 - 3863158
Alignment:
| Q |
1 |
agtgatgtgtatagagttgaaagttgatttgataattattggaacatgataataaatgcttgctgttttgaaggtgggacctttttgtc------cttaa |
94 |
Q |
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| T |
3863415 |
agtgatgtgtatagagttgaaagttgatttgataattattggaacatgataataaatgcttgctgttttgaaggtgggacctttttgtctgacctcttaa |
3863316 |
T |
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| Q |
95 |
agtgtaggataatactatatatagcacacttgtgtataacaattagtttagcagtatattatga-----gaataagtacaaatgctacataagcgcattt |
189 |
Q |
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| T |
3863315 |
agtgtaggataatactatatataccacacttgtgtataaccattagtttagcagtatattatgatacgagaataagtacaaatgctacataagcgcattt |
3863216 |
T |
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| Q |
190 |
tataaaccatagataataagcacaaggttttatactcaagcatgttatcagttgagtc |
247 |
Q |
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| T |
3863215 |
tataaaccatagataataagcacaaggttttatactcaagcatgttaccagttgagtc |
3863158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 273 - 433
Target Start/End: Complemental strand, 3863131 - 3862971
Alignment:
| Q |
273 |
ctgtgtagattgatctttcagttccagagtcacctattagaagaacctgaagaatgcattctaacttttgtaaggttggataagatgctatattcattga |
372 |
Q |
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| T |
3863131 |
ctgtgtagattgatctttcagttccagagtcacctattagaagaacctgaagaatgcattctaacttttgtaaggttggataagatgctatattcattga |
3863032 |
T |
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| Q |
373 |
ttctttccatattccttttaatcatgaaactctcagaaattcaaagtatgtagtttgatgc |
433 |
Q |
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| T |
3863031 |
ttctttccatattccttttaatcatgaaactctcagaaattcaaagtatttagtttgatgc |
3862971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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