View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16659_low_6 (Length: 461)

Name: NF16659_low_6
Description: NF16659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16659_low_6
NF16659_low_6
[»] chr3 (33 HSPs)
chr3 (18-444)||(41985456-41985885)
chr3 (18-442)||(41980684-41981114)
chr3 (170-309)||(9494822-9494961)
chr3 (156-314)||(9407324-9407482)
chr3 (159-319)||(9425526-9425686)
chr3 (156-294)||(9343823-9343961)
chr3 (50-272)||(9448314-9448536)
chr3 (156-304)||(9329804-9329952)
chr3 (156-312)||(9617463-9617619)
chr3 (156-304)||(9336508-9336656)
chr3 (156-314)||(9397743-9397903)
chr3 (159-291)||(9655360-9655492)
chr3 (156-304)||(9695616-9695764)
chr3 (159-291)||(9646367-9646499)
chr3 (170-302)||(9352871-9353003)
chr3 (156-316)||(9432852-9433012)
chr3 (156-311)||(9416534-9416689)
chr3 (171-264)||(9340679-9340772)
chr3 (209-302)||(9377056-9377149)
chr3 (212-307)||(9614009-9614104)
chr3 (347-445)||(9343669-9343767)
chr3 (164-302)||(9626488-9626626)
chr3 (190-290)||(9441815-9441915)
chr3 (171-302)||(9347957-9348088)
chr3 (171-302)||(9369611-9369742)
chr3 (150-271)||(9756381-9756502)
chr3 (380-444)||(9432712-9432776)
chr3 (351-404)||(9695838-9695891)
chr3 (156-204)||(9686751-9686799)
chr3 (348-436)||(9756231-9756319)
chr3 (348-396)||(16011844-16011892)
chr3 (242-271)||(16011768-16011797)
chr3 (348-444)||(9617657-9617753)
[»] chr8 (3 HSPs)
chr8 (36-436)||(44688665-44689065)
chr8 (21-216)||(13170549-13170744)
chr8 (276-441)||(13170758-13170923)
[»] chr1 (8 HSPs)
chr1 (18-435)||(18991041-18991455)
chr1 (161-312)||(4428591-4428742)
chr1 (205-312)||(4439820-4439927)
chr1 (174-290)||(235195-235311)
chr1 (179-294)||(8814385-8814500)
chr1 (181-298)||(246841-246958)
chr1 (174-277)||(251412-251515)
chr1 (179-264)||(231589-231674)
[»] chr2 (1 HSPs)
chr2 (159-302)||(20694304-20694447)
[»] chr6 (7 HSPs)
chr6 (156-304)||(7041464-7041612)
chr6 (174-310)||(7046801-7046937)
chr6 (174-302)||(7025720-7025854)
chr6 (174-302)||(7012784-7012918)
chr6 (174-235)||(7029850-7029911)
chr6 (176-301)||(9159515-9159646)
chr6 (174-301)||(9170782-9170915)
[»] chr7 (3 HSPs)
chr7 (169-301)||(3695661-3695792)
chr7 (156-264)||(450111-450219)
chr7 (348-396)||(450315-450363)
[»] chr5 (2 HSPs)
chr5 (170-294)||(18571086-18571213)
chr5 (174-301)||(33541623-33541750)


Alignment Details
Target: chr3 (Bit Score: 396; Significance: 0; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 41985885 - 41985456
Alignment:
Q  18 actatagtgtcgagttattggctgaatatgtggatggaggggacatgaaattcctggtagagagtgagcgtga---gttgttgctagtagacatatatga 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||||||    
T  41985885 actatagtgtcgagttattggctgaatatgtggatggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatga 41985786  T
Q  115 ctctcattgttttggtttccctggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggg 214  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985785 ctctcattgttttggtttccccggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggg 41985686  T
Q  215 gatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcat 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41985685 gatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcat 41985586  T
Q  315 tcaacgattttgaccagatgctttgtgggatgtgtgtttttcacttggatcaatgccgggtttcccctttgtctgattatcctgagtactccacctcgtt 414  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  41985585 tctacgattttgaccagatgctttgtgggatgtgtgtttttcacttggatcaatgttgggtttcccctttgtctgattatcctgagtactccacctcgtt 41985486  T
Q  415 ttggccacctccggaatggatcgtcaaaag 444  Q
    ||||||||||||||||||||||||||||||    
T  41985485 ttggccacctccggaatggatcgtcaaaag 41985456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 18 - 442
Target Start/End: Complemental strand, 41981114 - 41980684
Alignment:
Q  18 actatagtgtcgagttattggctgaatatgtgg---atggagg---ggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatata 111  Q
    ||||||||||| ||||| ||||||||||| |||   |||||||   |||  ||||||||||||||||||||||| |||| || |||||||| ||||| ||    
T  41981114 actatagtgtccagttagtggctgaatatttggtgtatggaggaggggatgtgaaattcctggtagagagtgagggtgaattattgctagtggacattta 41981015  T
Q  112 tgactctcattgttttggtttccctggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagttta 211  Q
    | ||||||||||| |||| |||||||||||||||||||| || ||||||||||| || |||| | |||| ||||||||||||||||||||| ||||||||    
T  41981014 tcactctcattgtgttgggttccctggtgaagatggtttcaatcttgatgtgtttaggcttgctaagaaagagaagaaatgggtcaagttgacgagttta 41980915  T
Q  212 ggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 311  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||| | ||||||  || |||||    
T  41980914 ggggatagagttttgttcttggggaatggatgttcgttttttgcttctgcttcaaatttgtctgttgtcaaaggaaattgtattatctttgttggtgatg 41980815  T
Q  312 cattcaacgattttgaccagatgctttgtgggatgtgtgtttttcacttggatcaatgccgggtttcccctttgtctgattatcctgagtactccacctc 411  Q
    |||||  |  |||| || | ||||| |||||||||||| ||||||||||||||||| | || |||||||||||||| ||||||||||| |||| || ||     
T  41980814 cattcctcccttttaacaaaatgctatgtgggatgtgtatttttcacttggatcaaggtcgtgtttcccctttgtccgattatcctgaatactacaactt 41980715  T
Q  412 gttttggccacctccggaatggatcgtcaaa 442  Q
    |||  ||||||||||||||||||||||||||    
T  41980714 gttagggccacctccggaatggatcgtcaaa 41980684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 170 - 309
Target Start/End: Original strand, 9494822 - 9494961
Alignment:
Q  170 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 269  Q
    |||||||||||||||| || |||||| || |||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  9494822 cttgatgagaaggagatgagatgggtgaatttgatgagtttaggggatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatt 9494921  T
Q  270 tgtctgttgtcaaaggaaattgtgtcatctttagtgatga 309  Q
    |||  |||  |||||| |||||||||||||||| ||||||    
T  9494922 tgtgcgtttccaaagggaattgtgtcatctttattgatga 9494961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 156 - 314
Target Start/End: Complemental strand, 9407482 - 9407324
Alignment:
Q  156 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 255  Q
    |||||||||| |||||||| |||||| | || | |||||| ||||||  ||||||||||||||| ||||||||||| | |||||||||||| ||||||||    
T  9407482 ttgatgtgtttagacttgacgagaagaataaaagatgggtgaagttgatgagtttaggggatagggttttgttctttgtgaatggatgttcattttctgc 9407383  T
Q  256 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcat 314  Q
    ||| ||||||||||||| ||||| |||||| ||||||||| |||||| |||||||||||    
T  9407382 ttcagcttcggatttgtgtgttgccaaagggaattgtgtcttctttattgatgatgcat 9407324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 159 - 319
Target Start/End: Complemental strand, 9425686 - 9425526
Alignment:
Q  159 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 258  Q
    ||||||| |||||||| |||||| | || |||||||| ||||||  ||||||| || |||| ||||||||||| | |||||||||||| |||||||||||    
T  9425686 atgtgtttagacttgacgagaagaataaaaaatgggtgaagttgatgagtttaaggaatagggttttgttctttgtgaatggatgttcattttctgcttc 9425587  T
Q  259 tgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcattcaac 319  Q
     ||||||||||||| ||||| |||||| ||||||||||||||||  |||||||||| ||||    
T  9425586 agcttcggatttgtgtgttgccaaagggaattgtgtcatctttatcgatgatgcatacaac 9425526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 156 - 294
Target Start/End: Complemental strand, 9343961 - 9343823
Alignment:
Q  156 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 255  Q
    |||||||||| |  |||||||||| ||||||||| ||||| |||||  | | |||||||||||| ||||||||||||||||||| |||||||||||||||    
T  9343961 ttgatgtgtttaagcttgatgagatggagaagaagtgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgaatgttcgttttctgc 9343862  T
Q  256 ttctgcttcggatttgtctgttgtcaaaggaaattgtgt 294  Q
    ||||||||||||||||| ||||   | ||||||||||||    
T  9343861 ttctgcttcggatttgtgtgttcctagaggaaattgtgt 9343823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 50 - 272
Target Start/End: Complemental strand, 9448536 - 9448314
Alignment:
Q  50 gatggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccctggtgaagatggtt 149  Q
    |||||||||||||| |||||| | || || || ||| | || ||||||||||| ||||| ||||| | |  |||||| |  ||||| |||   |||| |     
T  9448536 gatggaggggacataaaattcttagttgatagagagggagacttgttgctagtggacatttatgagtgtttttgtttcgagttcccgggtcctgatgcta 9448437  T
Q  150 taaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 249  Q
    ||| | |||||||||| |  ||| |||||||||||||||||||||| |||||  | | |||||||||||| |||||||||||||||||||  ||||||||    
T  9448436 taagggttgatgtgtttaagctttatgagaaggagaagaaatgggtgaagttaacaactttaggggatagtgttttgttcttggggaatgactgttcgtt 9448337  T
Q  250 ttctgcttctgcttcggatttgt 272  Q
    |||||||||||||||||||||||    
T  9448336 ttctgcttctgcttcggatttgt 9448314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 156 - 304
Target Start/End: Complemental strand, 9329952 - 9329804
Alignment:
Q  156 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 255  Q
    |||||||||| || ||||||||||| ||||| |  |||||||||||||||| |||||| ||||  |||||||||||||||||||||| ||||||||||||    
T  9329952 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagttggcgaatttaggagataaggttttgttcttggggaatggatattcgttttctgc 9329853  T
Q  256 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 304  Q
    ||||||||| || |||  | ||| ||| || ||||||||||||| ||||    
T  9329852 ttctgcttccgagttgggttttgccaatgggaattgtgtcatctatagt 9329804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 156 - 312
Target Start/End: Original strand, 9617463 - 9617619
Alignment:
Q  156 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 255  Q
    |||| ||||||||  || ||||||| |||||||||||||| ||||||   | |||||||||||| ||||||||| | | |||||||||||| ||||||||    
T  9617463 ttgaagtgttcaggtttcatgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgc 9617562  T
Q  256 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgc 312  Q
    ||||||||| ||||||| ||||  |||||| |||||||||||||||| ||| |||||    
T  9617563 ttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttattgacgatgc 9617619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 304
Target Start/End: Complemental strand, 9336656 - 9336508
Alignment:
Q  156 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 255  Q
    |||||||||| || ||||||||||| ||||| |  ||||||||| || ||| |||||| ||||  |||||||||||||||||||||||||||||||||||    
T  9336656 ttgatgtgtttaggcttgatgagaaagagaaaaggtgggtcaagctgacgaatttaggagataaggttttgttcttggggaatggatgttcgttttctgc 9336557  T
Q  256 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 304  Q
    ||||||||| || |||  | ||| ||| || ||||||||||||| ||||    
T  9336556 ttctgcttccgagttgggttttgccaatgggaattgtgtcatctatagt 9336508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 156 - 314
Target Start/End: Complemental strand, 9397903 - 9397743
Alignment:
Q  156 ttgatgtgttcagacttgatgagaaggagaagaaa--tgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttct 253  Q
    |||||||||| |||||||| |||||| | || |||  || || ||||||  ||||||||||||||| || |||||||| | |||||||||||| |||||     
T  9397903 ttgatgtgtttagacttgacgagaagtataaaaaaaatgcgtgaagttgatgagtttaggggatagggtcttgttctttgtgaatggatgttcattttcc 9397804  T
Q  254 gcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcat 314  Q
    ||||| |||| |||||||| ||||| |||||| ||||||||| |||||| |||||||||||    
T  9397803 gcttcagctttggatttgtgtgttgccaaagggaattgtgtcgtctttattgatgatgcat 9397743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 159 - 291
Target Start/End: Original strand, 9655360 - 9655492
Alignment:
Q  159 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 258  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| |||||  | ||||||||||||||||| ||    
T  9655360 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgtttttgggcgaaggatgttcgttttctgcatc 9655459  T
Q  259 tgcttcggatttgtctgttgtcaaaggaaattg 291  Q
     ||||||||||||| ||||  |||||| |||||    
T  9655460 agcttcggatttgtgtgtttccaaagggaattg 9655492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 156 - 304
Target Start/End: Original strand, 9695616 - 9695764
Alignment:
Q  156 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 255  Q
    ||||||| ||||| |||||||||||||||||||| |||||||||||| | | |||||||||||| |||||||| |||||| | |  |||||||| |||||    
T  9695616 ttgatgtattcaggcttgatgagaaggagaagaagtgggtcaagttgaccaatttaggggatagggttttgtttttgggggaagactgttcgttctctgc 9695715  T
Q  256 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 304  Q
     |||||||| || |||| |||||  || || ||||||||||||| ||||    
T  9695716 atctgcttcagagttgtgtgttgcaaatgggaattgtgtcatctatagt 9695764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 159 - 291
Target Start/End: Original strand, 9646367 - 9646499
Alignment:
Q  159 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 258  Q
    |||| |||||| || |||||||||||||||||||||| ||||||  || |||||||||||| |||||||| || ||  | ||||||||||||||||| ||    
T  9646367 atgttttcagatttcatgagaaggagaagaaatgggtgaagttgatgaatttaggggatagggttttgttttttggcgaaggatgttcgttttctgcatc 9646466  T
Q  259 tgcttcggatttgtctgttgtcaaaggaaattg 291  Q
     ||||||||||||| ||||  |||||| |||||    
T  9646467 agcttcggatttgtgtgtttccaaagggaattg 9646499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 170 - 302
Target Start/End: Complemental strand, 9353003 - 9352871
Alignment:
Q  170 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatt 269  Q
    |||||||||| ||||||||| ||||| ||||||   |  ||||||| ||| ||||||||  |||||| ||||||||||||||||||||||| || ||||     
T  9353003 cttgatgagatggagaagaagtgggtgaagttgaaaaaattagggggtagggttttgtttgtggggagtggatgttcgttttctgcttctggttgggatc 9352904  T
Q  270 tgtctgttgtcaaaggaaattgtgtcatcttta 302  Q
    ||| | ||  |||||||||||||||||||||||    
T  9352903 tgtgtcttcccaaaggaaattgtgtcatcttta 9352871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 156 - 316
Target Start/End: Complemental strand, 9433012 - 9432852
Alignment:
Q  156 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 255  Q
    ||||||| |||||||||||||||||||||| ||| ||||| ||| |   || |||||| ||||| ||||||||| | |||  || || ||| ||||||||    
T  9433012 ttgatgttttcagacttgatgagaaggagaggaagtgggtgaagatcaagaatttaggagatagggttttgttcatagggcttgaatattccttttctgc 9432913  T
Q  256 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcattc 316  Q
    ||| || |||||||||| ||||  | |||| |||||| ||||||||| |||||||| ||||    
T  9432912 ttcagcctcggatttgtgtgtttccgaagggaattgtatcatctttattgatgatgtattc 9432852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 311
Target Start/End: Complemental strand, 9416689 - 9416534
Alignment:
Q  156 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 255  Q
    ||||||||||| | ||||| |||||| | || |||||||| |||||| |||||||||||||||| || |||||||| | ||||  |||||| ||||||||    
T  9416689 ttgatgtgttctgtcttgacgagaagaataaaaaatgggtgaagttgacgagtttaggggatagggtgttgttcttcgtgaataaatgttcattttctgc 9416590  T
Q  256 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatg 311  Q
    ||| || | |||| ||| ||||   ||||| ||||||||  |||||| ||||||||    
T  9416589 ttcagccttggatatgtgtgttactaaagggaattgtgttgtctttattgatgatg 9416534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 9340772 - 9340679
Alignment:
Q  171 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 264  Q
    ||||||||||||||||||| ||||| ||||||  || ||| |||||||| ||||| ||| | |||  |||||||||||||||||||||||||||    
T  9340772 ttgatgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttctgcttc 9340679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 209 - 302
Target Start/End: Complemental strand, 9377149 - 9377056
Alignment:
Q  209 ttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttta 302  Q
    |||||||||||  |||||||  |||||| ||||||||||||| |||||||||||| |||| ||| | ||  |||||||||||||||||||||||    
T  9377149 ttaggggataggattttgtttgtggggagtggatgttcgtttcctgcttctgcttgggatctgtgtcttcccaaaggaaattgtgtcatcttta 9377056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 212 - 307
Target Start/End: Original strand, 9614009 - 9614104
Alignment:
Q  212 ggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgat 307  Q
    |||||||  ||||| |||||||||| ||||||||| ||||||||||||||||| ||| ||| | ||  ||||||||||||||| ||||||| ||||    
T  9614009 ggggatatggtttttttcttggggagtggatgttcattttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgttatctttattgat 9614104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 347 - 445
Target Start/End: Complemental strand, 9343767 - 9343669
Alignment:
Q  347 tgtgtttttcacttggatcaatgccgggtttcccctttgtctgattatcctgagtactccacctcgttttggccacctccggaatggatcgtcaaaagt 445  Q
    |||||||||||| |||||||| | ||| |||| ||| ||||||||| |||||| || |  |||| ||| |||||||||||||| |||||||||||||||    
T  9343767 tgtgtttttcacatggatcaaggtcggctttcacctctgtctgattgtcctgaatattttaccttgttctggccacctccggagtggatcgtcaaaagt 9343669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 302
Target Start/End: Original strand, 9626488 - 9626626
Alignment:
Q  164 ttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgctt 263  Q
    |||||| || |||||||||||||||||||||| || |||  || |||||||||||| |||||||| || || || |||   || |||||||| || ||||    
T  9626488 ttcagatttcatgagaaggagaagaaatgggtgaatttgatgaatttaggggatagggttttgttttttggcaaaggaacatcattttctgcatcagctt 9626587  T
Q  264 cggatttgtctgttgtcaaaggaaattgtgtcatcttta 302  Q
    ||||||||| ||||  |||||| |||||  |||||||||    
T  9626588 cggatttgtgtgtttccaaagggaattgcatcatcttta 9626626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 190 - 290
Target Start/End: Original strand, 9441815 - 9441915
Alignment:
Q  190 atgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaat 289  Q
    |||||| ||||||  ||||||||||||||| ||||||||||| | ||||  |||||| ||||||||||| || | |||| ||| |||||||||||| |||    
T  9441815 atgggtgaagttgatgagtttaggggatagggttttgttctttgtgaataaatgttcattttctgcttcagccttggatatgtgtgttgtcaaagggaat 9441914  T
Q  290 t 290  Q
    |    
T  9441915 t 9441915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 302
Target Start/End: Complemental strand, 9348088 - 9347957
Alignment:
Q  171 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggattt 270  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  ||||||||||||||||||||||||||| ||| |    
T  9348088 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatct 9347989  T
Q  271 gtctgttgtcaaaggaaattgtgtcatcttta 302  Q
     | | ||   ||||||||||||||| ||||||    
T  9347988 atgtattccgaaaggaaattgtgtcgtcttta 9347957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 302
Target Start/End: Complemental strand, 9369742 - 9369611
Alignment:
Q  171 ttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggattt 270  Q
    ||||||||||||||||||| ||||| ||||||  |  ||| ||||||||  |||| ||| | |||  ||||||||||||||||||||||||||| ||| |    
T  9369742 ttgatgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatct 9369643  T
Q  271 gtctgttgtcaaaggaaattgtgtcatcttta 302  Q
     | | ||   ||||||||||||||| ||||||    
T  9369642 atgtattccgaaaggaaattgtgtcgtcttta 9369611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 150 - 271
Target Start/End: Complemental strand, 9756502 - 9756381
Alignment:
Q  150 taaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgtt 249  Q
    ||||| |||||||||  || ||||||||||| ||||| |  ||||||||||||| || ||| |||||||| |||||||| || ||| | || ||||| ||    
T  9756502 taaagattgatgtgtataggcttgatgagaaagagaaaaggtgggtcaagttggtgaatttgggggatagggttttgtttttcggggaaggctgttcatt 9756403  T
Q  250 ttctgcttctgcttcggatttg 271  Q
     ||||| ||||| |||||||||    
T  9756402 ctctgcatctgcatcggatttg 9756381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 380 - 444
Target Start/End: Complemental strand, 9432776 - 9432712
Alignment:
Q  380 cctttgtctgattatcctgagtactccacctcgttttggccacctccggaatggatcgtcaaaag 444  Q
    |||||||||||||||||||| || | || || ||| |||||||||||||| ||||||||||||||    
T  9432776 cctttgtctgattatcctgaatattacaacttgttctggccacctccggagtggatcgtcaaaag 9432712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 404
Target Start/End: Original strand, 9695838 - 9695891
Alignment:
Q  351 tttttcacttggatcaatgccgggtttcccctttgtctgattatcctgagtact 404  Q
    ||||||||||||||||| | |||||||| |||||||||| ||||||||| ||||    
T  9695838 tttttcacttggatcaaggtcgggtttcacctttgtctggttatcctgattact 9695891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 9686799 - 9686751
Alignment:
Q  156 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggc 204  Q
    ||||||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  9686799 ttgatgtattcaggcttgatgagaacgagaagaagtgggtcaagttggc 9686751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 436
Target Start/End: Complemental strand, 9756319 - 9756231
Alignment:
Q  348 gtgtttttcacttggatcaatgccgggtttcccctttgtctgattatcctgagtactccacctcgttttggccacctccggaatggatc 436  Q
    ||||||||| |||||| ||| | |||||||| | |||||||||||||||||| |||| ||  | ||| | |||||||||||| ||||||    
T  9756319 gtgtttttcgcttggaccaaggtcgggtttcacttttgtctgattatcctgactacttcaagttgttcttgccacctccggagtggatc 9756231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 16011844 - 16011892
Alignment:
Q  348 gtgtttttcacttggatcaatgccgggtttcccctttgtctgattatcc 396  Q
    |||||||||||||||||||| | ||| |||| |||||||||||||||||    
T  16011844 gtgtttttcacttggatcaaggtcggatttcacctttgtctgattatcc 16011892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 271
Target Start/End: Original strand, 16011768 - 16011797
Alignment:
Q  242 tgttcgttttctgcttctgcttcggatttg 271  Q
    ||||||||||||||||||||||||||||||    
T  16011768 tgttcgttttctgcttctgcttcggatttg 16011797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 444
Target Start/End: Original strand, 9617657 - 9617753
Alignment:
Q  348 gtgtttttcacttggatcaatgccgggtttcccctttgtctgattatcctgagtactccacctcgttttggccacctccggaatggatcgtcaaaag 444  Q
    |||| ||||| ||||||||| | ||| ||||  || |||||  ||||||||| |||| || || ||| |||||||||||||| |||||| |||||||    
T  9617657 gtgtctttcatttggatcaaggtcggctttcgtctatgtctcgttatcctgaatacttcaacttgttctggccacctccggattggatcttcaaaag 9617753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 36 - 436
Target Start/End: Original strand, 44688665 - 44689065
Alignment:
Q  36 tggctgaatatgtggatggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttggtttccc 135  Q
    ||||| || |||| |||||||||||||| ||||||||||||||||||||  |||||||||||||||| ||||| |||||||||||| ||||||| |||||    
T  44688665 tggctaaacatgttgatggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggttttgggttccc 44688764  T
Q  136 tggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 235  Q
     |||||||||||| ||  ||||||||||||||  ||  |||||||| | ||||||||||| |||||  ||||||||||| ||||| ||||||||||||||    
T  44688765 gggtgaagatggtctacggcttgatgtgttcacgctcaatgagaagcataagaaatgggtaaagttaacgagtttagggaatagaattttgttcttgggg 44688864  T
Q  236 aatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcattcaacgattttgaccagatgc 335  Q
    |||| || ||| |||||| || ||||||||||||||||| ||| |||||| |||||||| ||||| | |  |||  | |||||| |||||||| | ||||    
T  44688865 aatgaatattcattttctactactgcttcggatttgtctattgccaaagggaattgtgtaatcttcacttgtgaatccttcaactattttgacgatatgc 44688964  T
Q  336 tttgtgggatgtgtgtttttcacttggatcaatgccgggtttcccctttgtctgattatcctgagtactccacctcgttttggccacctccggaatggat 435  Q
    |||||||||||||||||||||||||||||||| || | |||||||||||||| |||||||||||  |||||| || ||| ||||||||||| || |||||    
T  44688965 tttgtgggatgtgtgtttttcacttggatcaacgcagagtttcccctttgtccgattatcctgatcactccaacttgttctggccacctcctgactggat 44689064  T
Q  436 c 436  Q
    |    
T  44689065 c 44689065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 13170549 - 13170744
Alignment:
Q  21 atagtgtcgagttattggctgaatatgtggatggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctca 120  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||| ||||| |||||| ||||    
T  13170549 atagtgttgagttattgactgaatatgtggatggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgaccctca 13170648  T
Q  121 ttgttttggtttccctggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttagggga 216  Q
    | |||  ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13170649 tcgttacggtttccctggtgaatatggtttaaagcttgatgtgttcagacttgatgaaaaggagaagaaatgggtcaagttggcgagtttagggga 13170744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 276 - 441
Target Start/End: Original strand, 13170758 - 13170923
Alignment:
Q  276 ttgtcaaaggaaattgtgtcatctttagtgatgatgcattcaacgattttgaccagatgctttgtgggatgtgtgtttttcacttggatcaatgccgggt 375  Q
    ||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  13170758 ttgtcaaaggaaattgtgtcatctttagtgatgatgcattccactatgttgacgagatgctttgtgggatgtgtgtttttcacttggatcaatgccggct 13170857  T
Q  376 ttcccctttgtctgattatcctgagtactccacctcgttttggccacctccggaatggatcgtcaa 441  Q
    ||||||||| ||||||| ||| ||||||| || || ||||||||||||||| ||||||||||||||    
T  13170858 ttcccctttatctgattgtcccgagtacttcaacttgttttggccacctccagaatggatcgtcaa 13170923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 18991455 - 18991041
Alignment:
Q  18 actatagtgtcgagttattggctgaatatgtggatggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactc 117  Q
    |||||||||| |||||| |||||||||||||| |||||||||| ||||||||| |||||||| ||||  |||||||||||||||| ||||| | ||||||    
T  18991455 actatagtgttgagttagtggctgaatatgtgaatggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgactc 18991356  T
Q  118 tcattgttttggtttccctggtgaagatggtttaaagcttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggat 217  Q
     ||||||||||| |||||||| ||| | ||| |||| ||  | ||||| || ||| ||||||   ||||| |||||   | || |  ||| |||||| ||    
T  18991355 gcattgttttgggttccctggcgaaaaaggtctaaaactgaaggtgtttaggcttaatgagagaaagaaggaatgg---aggtcgaagagcttagggaat 18991259  T
Q  218 agagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgcattca 317  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||| |||||| ||| ||||| ||||    
T  18991258 agggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatttatctgttgtcaaagggaattgtgtcgtctttattgacgatgcgttca 18991159  T
Q  318 acgattttgaccagatgctttgtgggatgtgtgtttttcacttggatcaatgccgggtttcccctttgtctgattatcctgagtactccacctcgttttg 417  Q
     |  ||||||  | ||||  |||||||||||||||||| |||||||  ||    || |||| ||||||||| |||||||||| |||| || || ||| ||    
T  18991158 tcccttttgataacatgcgatgtgggatgtgtgtttttgacttggacgaacaaaggctttctcctttgtctcattatcctgactacttcaacttgttctg 18991059  T
Q  418 gccacctccggaatggat 435  Q
    |||||||||||| |||||    
T  18991058 gccacctccggagtggat 18991041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 161 - 312
Target Start/End: Complemental strand, 4428742 - 4428591
Alignment:
Q  161 gtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctg 260  Q
    ||||| || ||||||||||||| |   |||||||| || ||| ||||||| |||||||| |||||||| |||||||||||||||| ||||||||| ||||    
T  4428742 gtgtttaggcttgatgagaaggcgcgtaaatgggtgaaattgacgagtttgggggatagggttttgtttttggggaatggatgtttgttttctgcctctg 4428643  T
Q  261 cttcggatttgtctgttgtcaaaggaaattgtgtcatctttagtgatgatgc 312  Q
    |||| || |||||||||   ||||| |||||||||||||||| |||||||||    
T  4428642 cttctgagttgtctgttactaaagggaattgtgtcatctttattgatgatgc 4428591  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 205 - 312
Target Start/End: Complemental strand, 4439927 - 4439820
Alignment:
Q  205 gagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 304  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||   ||||| |||||||||||||||| |    
T  4439927 gagtttgggagatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttatt 4439828  T
Q  305 gatgatgc 312  Q
    ||||||||    
T  4439827 gatgatgc 4439820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 235311 - 235195
Alignment:
Q  174 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 273  Q
    |||| ||||||||||| ||||| |||||||| | |||||||||||||||||| |||||||||     ||||||||||||||||||||||||||||||||     
T  235311 atgaaaaggagaagaagtgggtgaagttggcaaatttaggggatagagttttcttcttggggttgctatgttcgttttctgcttctgcttcggatttgtg 235212  T
Q  274 tgttgtcaaaggaaatt 290  Q
    ||||  |||||| ||||    
T  235211 tgttcccaaagggaatt 235195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 179 - 294
Target Start/End: Original strand, 8814385 - 8814500
Alignment:
Q  179 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttg 278  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||||      ||||| |||||||||||||||| |||||||| ||||     
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatagagttttgtttttggggtccttgtgttcattttctgcttctgctttggatttgtgtgttc 8814484  T
Q  279 tcaaaggaaattgtgt 294  Q
     |||||| ||||||||    
T  8814485 ccaaagggaattgtgt 8814500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 181 - 298
Target Start/End: Complemental strand, 246958 - 246841
Alignment:
Q  181 ggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtctgttgtc 280  Q
    ||||||||||||||| |||||||| | |||||| |||| ||||||||||||||||      || || |||||||||||||||| |||||||| ||||  |    
T  246958 ggagaagaaatgggtgaagttggctaatttaggagatacagttttgttcttggggttgttctggtcattttctgcttctgctttggatttgtgtgttcac 246859  T
Q  281 aaaggaaattgtgtcatc 298  Q
    ||||| ||||||||||||    
T  246858 aaagggaattgtgtcatc 246841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 251412 - 251515
Alignment:
Q  174 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 273  Q
    |||| ||||| ||||| ||||| |||||||||| | ||||||||||||||||||||||||||     |||||| ||||||| |||||| ||||||||||     
T  251412 atgaaaaggaaaagaagtgggtaaagttggcgaatataggggatagagttttgttcttggggtggctatgttcattttctgtttctgcatcggatttgtg 251511  T
Q  274 tgtt 277  Q
    ||||    
T  251512 tgtt 251515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 264
Target Start/End: Complemental strand, 231674 - 231589
Alignment:
Q  179 aaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttc 264  Q
    ||||||| ||| ||||| |||||||| | ||||||||||| ||||||||||||||||     |||||| |||||||||||||||||    
T  231674 aaggagatgaagtgggtgaagttggctaatttaggggatatagttttgttcttggggtccctatgttcattttctgcttctgcttc 231589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 159 - 302
Target Start/End: Original strand, 20694304 - 20694447
Alignment:
Q  159 atgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttc 258  Q
    |||||||||| |||||||| ||||||||||||||||| |  ||| | ||||| |||||||| |||||||| |||||||||||||||||||||||||||||    
T  20694304 atgtgttcaggcttgatgaaaaggagaagaaatgggtgagtttgacaagtttgggggatagggttttgtttttggggaatggatgttcgttttctgcttc 20694403  T
Q  259 tgcttcggatttgtctgttgtcaaaggaaattgtgtcatcttta 302  Q
    |||||||||||||| ||||| |||||| ||||||||||||||||    
T  20694404 tgcttcggatttgtgtgttgccaaagggaattgtgtcatcttta 20694447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 156 - 304
Target Start/End: Complemental strand, 7041612 - 7041464
Alignment:
Q  156 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 255  Q
    ||||| |||| | |||| |||||||||||||||| ||||| |||||| | |||||||||||||| ||||||||||||||  | | ||||||||| ||||     
T  7041612 ttgatttgtttaaacttaatgagaaggagaagaagtgggtgaagttgactagtttaggggatagggttttgttcttgggagaagtatgttcgttctctgt 7041513  T
Q  256 ttctgcttcggatttgtctgttgtcaaaggaaattgtgtcatctttagt 304  Q
    |||||||||||||||||  |||| |||||| ||||||||||||||||||    
T  7041512 ttctgcttcggatttgtgcgttgccaaagggaattgtgtcatctttagt 7041464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 174 - 310
Target Start/End: Complemental strand, 7046937 - 7046801
Alignment:
Q  174 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 273  Q
    |||||||||||||||| ||||| |||||  ||||||||||||||| |||||||||||||||||    |||||||||||||||||||  ||| |||||||     
T  7046937 atgagaaggagaagaagtgggtgaagttaacgagtttaggggataaagttttgttcttggggataaaatgttcgttttctgcttctttttcagatttgta 7046838  T
Q  274 tgttgtcaaaggaaattgtgtcatctttagtgatgat 310  Q
    ||||| |||||| |||||||| ||| |||||| ||||    
T  7046837 tgttgccaaagggaattgtgtgatcattagtgctgat 7046801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 174 - 302
Target Start/End: Complemental strand, 7025854 - 7025720
Alignment:
Q  174 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 267  Q
    |||||||||||||||| ||||| |||||| |||||||||| ||||| |||||||||||||||   ||      ||||||||||||||||| |||||| ||    
T  7025854 atgagaaggagaagaagtgggtgaagttgacgagtttaggagatagggttttgttcttggggttggggttggtatgttcgttttctgcttgtgcttcaga 7025755  T
Q  268 tttgtctgttgtcaaaggaaattgtgtcatcttta 302  Q
    ||||| ||||| |||||| |||| |||||||||||    
T  7025754 tttgtgtgttgccaaagggaattctgtcatcttta 7025720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 174 - 302
Target Start/End: Complemental strand, 7012918 - 7012784
Alignment:
Q  174 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 267  Q
    |||||||||||||||| ||||| |||||| | |||||||| |||||  ||||||||||||||   ||      ||||||||||||||| | |||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttgacaagtttaggagataggattttgttcttggggttggggttggtatgttcgttttctgcctgtgcttcgga 7012819  T
Q  268 tttgtctgttgtcaaaggaaattgtgtcatcttta 302  Q
    ||||| ||||| |||||| |||| |||||||||||    
T  7012818 tttgtgtgttgccaaagggaattctgtcatcttta 7012784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 7029911 - 7029850
Alignment:
Q  174 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttgggg 235  Q
    |||||||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||    
T  7029911 atgagaaggagaagaagtgggtgaagttgacgagtttcggggatagggttttgttcttgggg 7029850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 176 - 301
Target Start/End: Original strand, 9159515 - 9159646
Alignment:
Q  176 gagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcggatt 269  Q
    |||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||   ||      || ||||||||||| ||||||||| ||||    
T  9159515 gagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggtatattcgttttctgtttctgcttcagatt 9159614  T
Q  270 tgtctgttgtcaaaggaaattgtgtcatcttt 301  Q
    ||| ||||  |||||| |||||| ||||||||    
T  9159615 tgtgtgtttccaaagggaattgtatcatcttt 9159646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 174 - 301
Target Start/End: Complemental strand, 9170915 - 9170782
Alignment:
Q  174 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatgg------atgttcgttttctgcttctgcttcgga 267  Q
    |||||||||||||||| ||||| || ||  |||||||||||||||| |||||||||||||||   ||      || ||||||||||| ||||||||| ||    
T  9170915 atgagaaggagaagaagtgggtgaaattaacgagtttaggggatagggttttgttcttggggttggggttggtatattcgttttctgtttctgcttcaga 9170816  T
Q  268 tttgtctgttgtcaaaggaaattgtgtcatcttt 301  Q
    ||||| ||||  | |||| |||||| ||||||||    
T  9170815 tttgtgtgtttcccaagggaattgtatcatcttt 9170782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 3695792 - 3695661
Alignment:
Q  169 acttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggat 268  Q
    |||| |||||||| ||||||| ||  ||||||||  ||||||||||||||||||||||||||| || |    |||||| |||||||||  ||||||||||    
T  3695792 acttaatgagaagaagaagaagtga-tcaagttgtagagtttaggggatagagttttgttcttcggtatcatatgttcattttctgctattgcttcggat 3695694  T
Q  269 ttgtctgttgtcaaaggaaattgtgtcatcttt 301  Q
    ||||||| || |||||| |||||||| ||||||    
T  3695693 ttgtctgctgccaaagggaattgtgtgatcttt 3695661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 450111 - 450219
Alignment:
Q  156 ttgatgtgttcagacttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgc 255  Q
    |||||||||| || ||||||||||||||||| || ||||||||||||  || |||||| |||| | |||||||||| ||  ||   | ||| ||||||||    
T  450111 ttgatgtgtttaggcttgatgagaaggagaaaaagtgggtcaagttgaggaatttaggagatacaattttgttcttaggcgatctgtattccttttctgc 450210  T
Q  256 ttctgcttc 264  Q
    |||||||||    
T  450211 ttctgcttc 450219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 348 - 396
Target Start/End: Original strand, 450315 - 450363
Alignment:
Q  348 gtgtttttcacttggatcaatgccgggtttcccctttgtctgattatcc 396  Q
    |||||||||||||||||||| | |||||||| || ||||||||||||||    
T  450315 gtgtttttcacttggatcaaggtcgggtttcacccttgtctgattatcc 450363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 294
Target Start/End: Complemental strand, 18571213 - 18571086
Alignment:
Q  170 cttgatgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagtt---ttgttcttggggaatggatgttcgttttctgcttctgcttcgg 266  Q
    |||||||||||||||||||| ||||| || ||| ||||||||||||||| ||||   |||||||| || |  | | |||| ||||||  |||||||||||    
T  18571213 cttgatgagaaggagaagaagtgggtgaaattgacgagtttaggggatacagttgttttgttcttaggcatggcaggttctttttctatttctgcttcgg 18571114  T
Q  267 atttgtctgttgtcaaaggaaattgtgt 294  Q
    |||||| ||||  |||||| ||||||||    
T  18571113 atttgtgtgtttccaaagggaattgtgt 18571086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 301
Target Start/End: Complemental strand, 33541750 - 33541623
Alignment:
Q  174 atgagaaggagaagaaatgggtcaagttggcgagtttaggggatagagttttgttcttggggaatggatgttcgttttctgcttctgcttcggatttgtc 273  Q
    |||||||||||| | | ||||| |||||   ||||||||| ||||  ||||||||||| |||  ||  ||||| |||||||| |||||||| ||||||||    
T  33541750 atgagaaggagacggagtgggtgaagttaaagagtttaggagatattgttttgttcttaggggctgactgttccttttctgcatctgcttctgatttgtc 33541651  T
Q  274 tgttgtcaaaggaaattgtgtcatcttt 301  Q
     |||| |||||| ||||||||| |||||    
T  33541650 cgttgccaaaggtaattgtgtcctcttt 33541623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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