View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16659_low_9 (Length: 355)
Name: NF16659_low_9
Description: NF16659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16659_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 339
Target Start/End: Complemental strand, 50460758 - 50460428
Alignment:
| Q |
9 |
caagaatatatcactaagaaccaatttcgatacccaaagttttcaacactcaattagttatgctatgcgtcaatcatttgcgctagacctcagttgcggt |
108 |
Q |
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| T |
50460758 |
caagaatatatcactaagaaccaatctcgatacccaaagtttacaacactcaattagttatgctatgcgtcaatcatttgcgttagatctcagttgcggt |
50460659 |
T |
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| Q |
109 |
ggtgcaagaatataagactcgttatataaaaatagtgactatcaagtagaatgaaataagggaaataattttattactaataaaatcttaccaatgatgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50460658 |
ggtgcaagaatataagactcgttatataaaaatagtgactatcaagtagaatgaaataagggaaataattttattactaataaaatcttaccaatgatgt |
50460559 |
T |
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| Q |
209 |
caactatggttcttccattggtgaatctccctgttggtcttccaaaatcgataccattaggcaaaaaattagcctttgagagagaaataatgtaattatt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50460558 |
caactatggttcttccattggtgaatctccctgttggtcttccaaaatcgataccattaggcaaaaaattagcctttgagagagaaataatgtaattatt |
50460459 |
T |
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| Q |
309 |
gtttcctacatcaactagagaatctccaaat |
339 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
50460458 |
gtttcctacatcaactagagaatctccaaat |
50460428 |
T |
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