View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16660_high_1 (Length: 654)

Name: NF16660_high_1
Description: NF16660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16660_high_1
NF16660_high_1
[»] chr7 (1 HSPs)
chr7 (11-634)||(43860329-43860954)


Alignment Details
Target: chr7 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 11 - 634
Target Start/End: Complemental strand, 43860954 - 43860329
Alignment:
Q  11 agtgagatgaatatctatggttgcgtttcaggggtgtgacgcatcggttttgttggagtccactgctggtaacacggcggagaaggatgccattcctaat 110  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43860954 agtgacatgcatatctatggttgcgtttcaggggtgtgacgcatcggttttgttggagtccactgctggtaacacggcggagaaggatgccattcctaat 43860855  T
Q  111 ttatcattagcaggctttgatgtaatagaagacataaaagaagctttggaggaaaaatgtccaggaattgtttcatgtgctgatatactcacattggcta 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43860854 ttatcattagcaggctttgatgtaatagaagacataaaagaagctttggaggaaaaatgtccaggaattgtttcatgtgctgatatactcacattggcta 43860755  T
Q  211 ctagagatgctgttagtaatttatcaagctagctagagacgagtctatacatatttatgcatgtagcatcatattgattcattcatattttttattacag 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43860754 ctagagatgctgttagtaatttatcaagctagctagagacgagtctatacatatttatgcatgtagcatcatattgattcattcatattttttattacag 43860655  T
Q  311 tttaagaataaaccaaattgggaagtacttacgggtagaagagatggtactgtgtccagaagcattgaagccctaatcaatatcccggcacctttccata 410  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43860654 tttaagaataaaccaaattgggaagtgcttacgggtagaagagatggtactgtgtccagaagcattgaagccctaatcaatatcccggcacctttccata 43860555  T
Q  411 acatcacacagctcagacaaatctttgctaataaaaagcttactcttcatgacttggttgtattatcaggtacgtttaattaagtctgttttcnnnnnnn 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||           
T  43860554 acatcacacagctcagacaaatctttgctaataaaaagcttactcttcatgacttggttgtattatcaggtacatttaattaagtctgttttc-aaaaaa 43860456  T
Q  511 ntccatgttaaaaataaacattatgcata---acttgattaccaagctacttaaaatatagtctaagccatgctaattaaccaatttaaactatatagta 607  Q
     ||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43860455 atccatgttaaaaataaacattatgcataaatacttgattaccaagctacttaaaatatagtctaagccatgctaataaaccaatttaaactatatagta 43860356  T
Q  608 ccaacatagaacaaacatcggacatga 634  Q
    ||||| |||||||||||||||||||||    
T  43860355 ccaacgtagaacaaacatcggacatga 43860329  T

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