View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16660_high_3 (Length: 345)
Name: NF16660_high_3
Description: NF16660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16660_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 127 - 345
Target Start/End: Complemental strand, 17328278 - 17328060
Alignment:
| Q |
127 |
tgggagtgattaaatcagccataggagatgcaattctaacatcaatatttgttttcttcatctcaacattaagaattctctctacaaaaacatctctatt |
226 |
Q |
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| T |
17328278 |
tgggagtgattaaatcagccataggagatgcaattctaacatcaatatttgttttcttcatctcaacattaagaattctctctacaaaaacatctctttt |
17328179 |
T |
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| Q |
227 |
tctcaaccttcaaccactttcactaccaggcctattcatcacaaccatcctaaacacaataatcatcctcacaataagccttattggaagaatcttaggt |
326 |
Q |
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| T |
17328178 |
tctcaaccttcaaccactttcactaccaggcttattcatcacaaccatcctaaacacaataatcatcctcacaataagccttattggaagaatcttaggt |
17328079 |
T |
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| Q |
327 |
ggtgctagtttcaaccctt |
345 |
Q |
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| T |
17328078 |
ggtgctagttttaaccctt |
17328060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 17328391 - 17328339
Alignment:
| Q |
17 |
acatccaaaataagtgagtgagagtgtttcatcttccaagttccaataccaat |
69 |
Q |
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| T |
17328391 |
acatccaaaatatgtgagtgagagtgtttcatcttccaagttccaataccaat |
17328339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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