View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16660_low_10 (Length: 242)
Name: NF16660_low_10
Description: NF16660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16660_low_10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 41806127 - 41806367
Alignment:
| Q |
1 |
tagaagcccatcttacattctttctacagttaacattcctcttgttccgcgggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaa |
100 |
Q |
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| T |
41806127 |
tagaagcccgtcttacattctttctacagttaacattc-tcttgttccgcgggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaa |
41806225 |
T |
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| Q |
101 |
accataaactttgcaggaaaaggaaatgcatctaactttggagagagaaaaacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaac |
200 |
Q |
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| T |
41806226 |
accataaactttgcaggaaaaggaaatgcatctaactttggagagaaaaaaacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaac |
41806325 |
T |
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| Q |
201 |
ctcattcaagttcctacatctttttcctgacttttctgtgct |
242 |
Q |
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| T |
41806326 |
ctcattcaagttcctacatctttttcctgacttttctgtgct |
41806367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 33 - 242
Target Start/End: Original strand, 41800036 - 41800242
Alignment:
| Q |
33 |
acattcctcttgttccgcgggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatc |
132 |
Q |
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| T |
41800036 |
acattccccttgttcttcgggacctataaaatcaaataaccaggagaatctaacaaaatcaaacacaaaccataaactgtgcaggaaaaggaaatgcaca |
41800135 |
T |
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| Q |
133 |
taactttggagagagaaaaacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatc-tttttcctgac |
231 |
Q |
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| T |
41800136 |
tcactttggagaataaaaaacagaagtaag----atatttagaagattcacggcttgtgtttttctacctcgtttgagctcctacatcttttttcctgaa |
41800231 |
T |
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| Q |
232 |
ttttctgtgct |
242 |
Q |
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| T |
41800232 |
ttttctgtgct |
41800242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 30 - 121
Target Start/End: Original strand, 24685238 - 24685329
Alignment:
| Q |
30 |
ttaacattcctcttgttccgcgggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaa |
121 |
Q |
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| T |
24685238 |
ttaacattcctcttgttcttggggacctataaaatcaaataaccagaagaatctcacaaaatcaaacacaaaccataaactgtgcaggaaaa |
24685329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 35 - 230
Target Start/End: Original strand, 24631841 - 24632035
Alignment:
| Q |
35 |
attcctcttgttccgcgggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatcta |
134 |
Q |
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| T |
24631841 |
attcctcttgttctttgggactaataaaatcaaataaccgggataatctcacaaaatcgaaaacagaccataaattgtgttggaaaaagaaatccatatc |
24631940 |
T |
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| Q |
135 |
actttggagagagaaaaacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctga |
230 |
Q |
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| T |
24631941 |
acttggaagaga-agaaacattagtaagtgaaatatttagaagatttgtggcttgtatctgtctacctcattcaagctcctggatctttttcctga |
24632035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 24682519 - 24682594
Alignment:
| Q |
52 |
ggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaat |
127 |
Q |
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| T |
24682519 |
ggacctataaaatcaaagaaccaggagaatctcataaaatcaaacgcaaacaataaactgtgcaggaaaagtaaat |
24682594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 24653501 - 24653664
Alignment:
| Q |
18 |
ttctttctacagttaacattcctcttgttccgcgggacctataaaatcaaataacaaggagaatct--cacaaaatcaaacacaaaccataaactttgca |
115 |
Q |
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||||| ||||| ||||||||||||| ||| ||||||||||||||||| ||| |||||||||| || ||||||||||||| || ||||||| |||| |
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| T |
24653501 |
ttcttcctacatttaacattcctctctttctttcggacctataaaatcaaagaaccaggagaatctcgcataaaatcaaacacacacaataaactgtgca |
24653600 |
T |
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| Q |
116 |
gg--aaaaggaaatgcatctaactttggagagagaaaaacagtagtaagtgaaatatttagaagatt |
180 |
Q |
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| T |
24653601 |
ggaaaaaagtaaatgcatatca-tatggaaaaag--aaacagtagtaagtgaaatatttagaagatt |
24653664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 24685331 - 24685420
Alignment:
| Q |
141 |
gagagagaaaaacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctga |
230 |
Q |
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| T |
24685331 |
gagagagaaaaacagtggtaagtgcaacatttagaagattcgcggcttttgtttgtctacctcagtcgagctcctaggtctttttcctga |
24685420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 278654 - 278541
Alignment:
| Q |
19 |
tctttctacagttaacattcctcttgttccgcgggacctataaaatcaaataacaaggagaatctcacaaaatc-aaacacaaaccataaactttgcagg |
117 |
Q |
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|||| ||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||||| ||| |||||| ||| |||||||||||| || || |
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| T |
278654 |
tcttcctacatttaacattcctcttgttctttgggacctataatatcaaatgacaaggagaatttcagaaaatcaaaatccaaaccataaaccgtggtgg |
278555 |
T |
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| Q |
118 |
aaaaggaaatgcat |
131 |
Q |
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| T |
278554 |
aaaaggaaatgcat |
278541 |
T |
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