View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16660_low_2 (Length: 442)
Name: NF16660_low_2
Description: NF16660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16660_low_2 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 442
Target Start/End: Complemental strand, 2021136 - 2020713
Alignment:
| Q |
20 |
tatgcttaaatgattaaannnnnnnaagttgaacagaaccgcgagatttgcttcatgannnnnnnacatcttccattcttggatagaattgcatctatag |
119 |
Q |
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| T |
2021136 |
tatgcttaaatgattaaatttttttaagttgaacagaaccgcgagatgtgcttcatgatttttttacatcttccattcttggatagaattgcatctatag |
2021037 |
T |
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| Q |
120 |
aacaaacaaaagaaatcttcaataaaggttgtcaatttatggattgattattcatttcttaattttcttttgaaatgcaacatgtaaaaatactatttaa |
219 |
Q |
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| T |
2021036 |
aacaaacaaaagaaatcttcaataaaggttctcaatttatggattgattattcatttcttaattttcttttgaaatgcaacatgtaaaaatactatttaa |
2020937 |
T |
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| Q |
220 |
ataacctctgacacagtattgacaccgaatcttacagtttattgacaattctttggcgttgatcaggttgcagttgagttctccaatcaatt-tgtcggc |
318 |
Q |
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| T |
2020936 |
ataacctctgacacagtattgacaccaaatcttacatattattgacaattctttggcgttgatcaggttgcagttgagttctccaatcaattgtgtcggc |
2020837 |
T |
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| Q |
319 |
aatggattcagtaccctgattagcgacccaattactggaatccattaaatccttagtatctgaaacaccaaaaatagaacaatccaatcaaaagccaatt |
418 |
Q |
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| T |
2020836 |
aatggattcagtaccctgattagcgacccaattactggaatccattaaatccttagtatctgaaacaccaaaaatagaacaatccaatcaaaagccaatt |
2020737 |
T |
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| Q |
419 |
ctgaaaagaaacacgaaagggaca |
442 |
Q |
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| T |
2020736 |
ctgaaaagaaacatgaaagggaca |
2020713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 88 - 410
Target Start/End: Complemental strand, 2018509 - 2018183
Alignment:
| Q |
88 |
tcttccattcttggatagaattgcatctatagaacaaacaaaagaaatcttcaataaaggttgtcaatttatggattgattattcatttcttaattttct |
187 |
Q |
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| T |
2018509 |
tcttccattattggatagaattgcatctatagaacaaacaaaagaaatcttcaatgaaggttgtcaagatatggatcggttattcatttcttaattttct |
2018410 |
T |
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| Q |
188 |
tttgaaatgca---acatgtaaaaatactatttaaataacctctgacacagtattgacaccgaatcttacagtttattgacaattctttggcgttgatca |
284 |
Q |
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| T |
2018409 |
tttgaaatgcaacgacaggtaaaaatactatttaaataacctctgatacaatattgatactgaatcttacattttattgacaattctttggcgttgatca |
2018310 |
T |
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| Q |
285 |
ggttgcagttgagttctccaatcaa-tttgtcggcaatggattcagtaccctgattagcgacccaattactggaatccattaaatccttagtatctgaaa |
383 |
Q |
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| T |
2018309 |
ggttgcagttgagttctccaatcaactgtgtcagtagtgggttcagtaccctgattagcgacccaatccttcgaatccatcaaatccaaagtatctgaag |
2018210 |
T |
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| Q |
384 |
caccaaaaatagaacaatccaatcaaa |
410 |
Q |
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| T |
2018209 |
caccagaaaaagaacattccaatcaaa |
2018183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 223 - 442
Target Start/End: Complemental strand, 2035760 - 2035541
Alignment:
| Q |
223 |
acctctgacacagtattgacaccgaatcttacagtttattgacaattctttggcgttgatcaggttgcagttgagttctccaatcaa-tttgtcggcaat |
321 |
Q |
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| T |
2035760 |
acctctgacacagtattgaaactgaatcttacattttattgacaattctttggcgttgatcaggttgcagttgagttctccaatcaactgtgtcggcagt |
2035661 |
T |
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| Q |
322 |
ggattcagtaccctgattagcgacccaattactggaatccattaaatccttagtatctgaaacaccaaaaatagaacaatccaatcaaaagccaattctg |
421 |
Q |
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| T |
2035660 |
ggcttccgtaccctgattagggacccaattattggaatccatcaaatacgaagtatctgaagcaccagaaaaagaacaatccaatc-aaagccaattctg |
2035562 |
T |
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| Q |
422 |
aaaagaaacacgaaagggaca |
442 |
Q |
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| T |
2035561 |
aaaagaaacatgaaagggaca |
2035541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 141 - 308
Target Start/End: Complemental strand, 1989354 - 1989181
Alignment:
| Q |
141 |
ataaaggttgtcaat-ttatggattgattattcatttcttaattttcttttgaaatgcaacatg---taaaaatactatttaaataacctc--tgacaca |
234 |
Q |
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| T |
1989354 |
ataaaggttgtcaaagttatggattgattattaatttcttaattttcttttcaaatgcaacaacagctaacaatgctatttaaataacctcagtgataaa |
1989255 |
T |
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| Q |
235 |
gtattgacaccgaatcttacagtttattgacaattctttggcgttgatcaggttgcagttgagttctccaatca |
308 |
Q |
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||| |||||| |||||||||| ||| ||||| ||||| ||||||||||||||||| | |||||||||||||||| |
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| T |
1989254 |
gtactgacactgaatcttacattttgttgacgattctatggcgttgatcaggttgtatttgagttctccaatca |
1989181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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