View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16660_low_3 (Length: 389)
Name: NF16660_low_3
Description: NF16660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16660_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 5 - 374
Target Start/End: Original strand, 2621123 - 2621487
Alignment:
| Q |
5 |
atggacatcatcaatttagaaatggaccgctgaagagactaacccagttggacttagggagaatgttgaaaatagaagtttcacatcggataaaatagtg |
104 |
Q |
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| T |
2621123 |
atggtcatcatcaatttagaaatggaccgctgaagagactaacccagttggacttagggagaatgttgaaaatagaagtttcacatcggataaaatagtg |
2621222 |
T |
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| Q |
105 |
agactaaaagagtttataaggaacatgaggtgaacgaccaatatgtttagactttttgatcctaaacctccaaggttactcggcatgatttataggagtt |
204 |
Q |
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| T |
2621223 |
agactaaaagagtttataaggaacatgaggtgaacgaccaatatgtttagactttttgatcctaaacctccaaggttactcggcatgatttataggagtt |
2621322 |
T |
|
| Q |
205 |
gtgtatcttgatgtagtttgaatatcccttgtaatctgtttaatataattaatcaaactttgattataaaaaatgattcaacgaattaatgattgctatt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621323 |
gtgtatcttgatgtagtttgaatatcccttgtaatctgtt-----taattaatcaaactttgattataaaaaatgattcaacgaattaatgattgctatt |
2621417 |
T |
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| Q |
305 |
gtgctagttttgacactgatatagtccatgtgtttatatgaacagtatgatgtgtatgggaacctctttg |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621418 |
gtgctagttttgacactgatatagtccatgtgtttatatgaacagtatgatgtgtatgggaacctctttg |
2621487 |
T |
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