View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16660_low_6 (Length: 290)
Name: NF16660_low_6
Description: NF16660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16660_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 104 - 280
Target Start/End: Complemental strand, 29147544 - 29147365
Alignment:
| Q |
104 |
atgaaaaatgagaggagacatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgtgagttttgt |
203 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29147544 |
atgaaaaatgggaggagacatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgcgagttttgt |
29147445 |
T |
|
| Q |
204 |
gtgctgcaacagcactaatctcagcagaatggtgactatgatgatgatg---atgaccaatataaaattccttccctttg |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29147444 |
gtgctgcaacagcactaatctcagcagaatggtgactatgatgatgatgatgatgaccaatataaaattccttccctttg |
29147365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 118 - 280
Target Start/End: Original strand, 29224151 - 29224322
Alignment:
| Q |
118 |
gagacatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgtgagttttgtgtgctgcaacagca |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29224151 |
gagacatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgtgagttttgtgtgctgcaacagca |
29224250 |
T |
|
| Q |
218 |
ctaatctcagcagaatggtgact---------atgatgatgatgatgaccaatataaaattccttccctttg |
280 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29224251 |
ctaatctcagcagaatggtgactatgatgatgatgatgatgatgatgaccaatataaaattccttccctttg |
29224322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 29224074 - 29224135
Alignment:
| Q |
18 |
tatataagagttaagccgaaagaaatcagaatcatctcattcaagtgttcttgacaatcaat |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29224074 |
tatataagagttaagccgaaagaaatcagaatcatctcattcaagtgttcttggcaatcaat |
29224135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 38851808 - 38851867
Alignment:
| Q |
156 |
agcatgctccaaccaaaaagaaagtgccacgaaacatgtgagttttgtgtgctgcaacag |
215 |
Q |
| |
|
|||||||||||| |||||| ||||| ||||||| ||| || |||||||| |||||||||| |
|
|
| T |
38851808 |
agcatgctccaatcaaaaacaaagtcccacgaagcatttgtgttttgtgagctgcaacag |
38851867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 121 - 280
Target Start/End: Original strand, 5303850 - 5304006
Alignment:
| Q |
121 |
acatacttgaagaataaaccaagcagtgtaagaacagcatgctccaaccaaaaagaaagtgccacgaaacatgtgagttttgtgtgctgcaacagcacta |
220 |
Q |
| |
|
||||||||| |||||||||||||| |||||| | || |||| |||||||||||||||||| ||||||| ||| |||||||| |||||| |||||| | || |
|
|
| T |
5303850 |
acatacttgcagaataaaccaagctgtgtaaaagcaacatgatccaaccaaaaagaaagttccacgaagcatatgagttttatgtgctacaacagaaata |
5303949 |
T |
|
| Q |
221 |
atctcagcagaatggtgactatgatgatgatgatgaccaatataaaattccttccctttg |
280 |
Q |
| |
|
| | | ||||||||| ||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5303950 |
acccctgcagaatgggaact---atgatgatgaggaccaatataaaattccttccctttg |
5304006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University