View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16660_low_7 (Length: 274)

Name: NF16660_low_7
Description: NF16660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16660_low_7
NF16660_low_7
[»] chr2 (5 HSPs)
chr2 (29-157)||(3769267-3769395)
chr2 (210-265)||(3769095-3769150)
chr2 (209-265)||(44911680-44911736)
chr2 (29-68)||(24437928-24437968)
chr2 (29-73)||(44944079-44944123)
[»] chr1 (5 HSPs)
chr1 (22-157)||(3928288-3928423)
chr1 (209-265)||(3928566-3928622)
chr1 (34-104)||(23347009-23347079)
chr1 (36-102)||(51184524-51184589)
chr1 (34-104)||(15248879-15248949)
[»] chr6 (2 HSPs)
chr6 (29-157)||(30373012-30373140)
chr6 (155-265)||(30372873-30372981)
[»] chr4 (3 HSPs)
chr4 (29-153)||(6353652-6353769)
chr4 (209-265)||(6353916-6353972)
chr4 (48-108)||(56532714-56532774)
[»] chr3 (6 HSPs)
chr3 (34-147)||(36501562-36501676)
chr3 (34-92)||(36496981-36497040)
chr3 (22-68)||(36502391-36502437)
chr3 (34-106)||(29429926-29429998)
chr3 (29-68)||(35420348-35420388)
chr3 (34-74)||(35653124-35653164)
[»] chr5 (3 HSPs)
chr5 (40-106)||(16914271-16914337)
chr5 (22-73)||(22967188-22967239)
chr5 (39-100)||(39933551-39933612)
[»] scaffold0025 (1 HSPs)
scaffold0025 (48-108)||(150368-150428)
[»] chr8 (1 HSPs)
chr8 (56-96)||(32318075-32318115)
[»] chr7 (3 HSPs)
chr7 (29-73)||(3772599-3772643)
chr7 (48-108)||(13784876-13784936)
chr7 (48-108)||(23902775-23902835)


Alignment Details
Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 29 - 157
Target Start/End: Complemental strand, 3769395 - 3769267
Alignment:
Q  29 gcatttcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaaatgaaactttacttctgtgg 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3769395 gcatttcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaaatgaaactttacttctgtgg 3769296  T
Q  129 tctctcacctctggattatcgcttctttc 157  Q
    ||||||||||||| |||||||||||||||    
T  3769295 tctctcacctctgaattatcgcttctttc 3769267  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 3769150 - 3769095
Alignment:
Q  210 gggtcaggaatttaactaccatagaacctccaatttaccgttcatgccattcatct 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3769150 gggtcaggaatttaactaccatagaacctccaatttaccgttcatgccattcatct 3769095  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 44911680 - 44911736
Alignment:
Q  209 agggtcaggaatttaactaccatagaacctccaatttaccgttcatgccattcatct 265  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  44911680 agggtcaggaatttaactaccataaaacatccaatttaccgttcatgccattcatct 44911736  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 24437968 - 24437928
Alignment:
Q  29 gcatttcaagtgagaggg-tttttattgtgagagatgagag 68  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  24437968 gcatatcaagtgagagggctttttattgtgagagatgagag 24437928  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 44944123 - 44944079
Alignment:
Q  29 gcatttcaagtgagagggtttttattgtgagagatgagagtgtta 73  Q
    |||| |||||||||| | |||||||||||||||||||||| ||||    
T  44944123 gcatatcaagtgagatgttttttattgtgagagatgagagggtta 44944079  T

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Target: chr1 (Bit Score: 124; Significance: 8e-64; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 22 - 157
Target Start/End: Original strand, 3928288 - 3928423
Alignment:
Q  22 atatagagcatttcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaaatgaaactttact 121  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3928288 atatagggcatttcaagtaagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaaatgaaactttact 3928387  T
Q  122 tctgtggtctctcacctctggattatcgcttctttc 157  Q
    | ||||||||||||||||||||||||||||||||||    
T  3928388 tttgtggtctctcacctctggattatcgcttctttc 3928423  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 3928566 - 3928622
Alignment:
Q  209 agggtcaggaatttaactaccatagaacctccaatttaccgttcatgccattcatct 265  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  3928566 agggtcaggaatttaactaccatagaaccttcaatttaccgttcatgtcattcatct 3928622  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 23347009 - 23347079
Alignment:
Q  34 tcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggtt 104  Q
    |||||||||||  |||||||| | ||||||||||| ||||| ||| |||||||| |||||| |||||||||    
T  23347009 tcaagtgagagattttttattataagagatgagagggttaaattataacccttgaatcaatattaacggtt 23347079  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 51184524 - 51184589
Alignment:
Q  36 aagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacgg 102  Q
    |||||||||| |||||||||||||||||||||| ||||| ||| |||| ||||||| |||| |||||    
T  51184524 aagtgagagg-tttttattgtgagagatgagagggttaaattataacctttggatcgatctcaacgg 51184589  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 104
Target Start/End: Original strand, 15248879 - 15248949
Alignment:
Q  34 tcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggtt 104  Q
    ||||||||||||| |||||  |||||||||||||| ||||| | | ||||||||||| ||| |||| ||||    
T  15248879 tcaagtgagagggcttttacagtgagagatgagagggttaaatcataacccttggattaatattaatggtt 15248949  T

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Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 157
Target Start/End: Complemental strand, 30373140 - 30373012
Alignment:
Q  29 gcatttcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaaatgaaactttacttctgtgg 128  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30373140 gcatttcaagtgagagggtttttattatgagagatgagagtgttaaattacaacccttggatcaatcttaacggttcaaaatgaaactttacttatgtgg 30373041  T
Q  129 tctctcacctctggattatcgcttctttc 157  Q
    |||||||||||||||||||||||||||||    
T  30373040 tctctcacctctggattatcgcttctttc 30373012  T

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Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 155 - 265
Target Start/End: Complemental strand, 30372981 - 30372873
Alignment:
Q  155 ttctcttctttgtcacgagagaaaaagggttactcacaacaacaccatagaaaaagggtcaggaatttaactaccatagaacctccaatttaccgttcat 254  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30372981 ttctcttctttgtcacgaga--aaaagggttactcacaacaacaccatagaaaaagggtcaggaatttaactaccatagatcctccaatttaccgttcat 30372884  T
Q  255 gccattcatct 265  Q
    | |||||||||    
T  30372883 gtcattcatct 30372873  T

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Target: chr4 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 6353652 - 6353769
Alignment:
Q  29 gcatttcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaaatgaaactttacttctgtgg 128  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       |    
T  6353652 gcatttcaagtgagagggttttcattatgagagatgagagtgttaagttataacccttggatcaatcttaacggttcaaaatgaaactttac-------g 6353744  T
Q  129 tctctcacctctggattatcgcttc 153  Q
    |||||||||||||||||||||||||    
T  6353745 tctctcacctctggattatcgcttc 6353769  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 209 - 265
Target Start/End: Original strand, 6353916 - 6353972
Alignment:
Q  209 agggtcaggaatttaactaccatagaacctccaatttaccgttcatgccattcatct 265  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6353916 agggtcatgaattaaactaccatagaacctccaatttaccgttcatgccattcatct 6353972  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 56532714 - 56532774
Alignment:
Q  48 ttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaa 108  Q
    |||||||||  |||||||||| ||||| |||||||| ||| | ||||||||||||||||||    
T  56532714 ttttattgtatgagatgagagggttaaattacaaccattgaaccaatcttaacggttcaaa 56532774  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 147
Target Start/End: Complemental strand, 36501676 - 36501562
Alignment:
Q  34 tcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaaatgaaactt-tacttctgtggtctc 132  Q
    ||||| |||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||| ||||||||| ||||| ||||| |||    
T  36501676 tcaagcgagagggtttttattgtgagagatgagaggattaagtcacaacccttggatcaatcttaactgttcaagatgaaacttgtacttatgtggcctc 36501577  T
Q  133 tcacctctggattat 147  Q
    ||   ||||||||||    
T  36501576 tcgtttctggattat 36501562  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 36496981 - 36497040
Alignment:
Q  34 tcaagtgagag-ggtttttattgtgagagatgagagtgttaagttacaacccttggatca 92  Q
    ||||||||||| |||| ||||||||||||||||||| ||||| | ||||||||| |||||    
T  36496981 tcaagtgagagtggttgttattgtgagagatgagagggttaaatcacaacccttagatca 36497040  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 36502437 - 36502391
Alignment:
Q  22 atatagagcatttcaagtgagagggtttttattgtgagagatgagag 68  Q
    |||||| |||| ||||||||||||  |||||||||||||||||||||    
T  36502437 atatagggcatatcaagtgagaggagttttattgtgagagatgagag 36502391  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 29429926 - 29429998
Alignment:
Q  34 tcaagtgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttca 106  Q
    |||| ||||||||||||||||||||||| ||||||   |||  || |||| || |||||||||||| ||||||    
T  29429926 tcaaatgagagggtttttattgtgagaggtgagaggactaaactataaccattagatcaatcttaatggttca 29429998  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 68
Target Start/End: Complemental strand, 35420388 - 35420348
Alignment:
Q  29 gcatttcaagtgagaggg-tttttattgtgagagatgagag 68  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  35420388 gcatatcaagtgagagggctttttattgtgagagatgagag 35420348  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 35653124 - 35653164
Alignment:
Q  34 tcaagtgagagggtttttattgtgagagatgagagtgttaa 74  Q
    ||||||||||||  ||||||||||||||||||||| |||||    
T  35653124 tcaagtgagaggagttttattgtgagagatgagagggttaa 35653164  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 106
Target Start/End: Complemental strand, 16914337 - 16914271
Alignment:
Q  40 gagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttca 106  Q
    ||||||||||||||||||||||||||||| ||||  ||| |||| || |||||||||||| ||||||    
T  16914337 gagagggtttttattgtgagagatgagagagttatattataaccattagatcaatcttaaaggttca 16914271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Complemental strand, 22967239 - 22967188
Alignment:
Q  22 atatagagcatttcaagtgagagggtttttattgtgagagatgagagtgtta 73  Q
    |||||| |||| |||||||||||| |||||||||||||||||||||| ||||    
T  22967239 atatagggcatatcaagtgagaggttttttattgtgagagatgagagggtta 22967188  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 39933612 - 39933551
Alignment:
Q  39 tgagagggtttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaac 100  Q
    |||||| |||||||||||||||||| |||| ||||| | | |||||||||||||||| ||||    
T  39933612 tgagagtgtttttattgtgagagataagagggttaaatcataacccttggatcaatcataac 39933551  T

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Target: scaffold0025 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 150368 - 150428
Alignment:
Q  48 ttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaa 108  Q
    ||||||||||||||||||||| |||||   | ||||||| |||||||||||||||||||||    
T  150368 ttttattgtgagagatgagagggttaaaccataacccttcgatcaatcttaacggttcaaa 150428  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 32318075 - 32318115
Alignment:
Q  56 tgagagatgagagtgttaagttacaacccttggatcaatct 96  Q
    ||||||||||||| ||||| |||||||||||||||||||||    
T  32318075 tgagagatgagagggttaaattacaacccttggatcaatct 32318115  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 3772599 - 3772643
Alignment:
Q  29 gcatttcaagtgagagggtttttattgtgagagatgagagtgtta 73  Q
    |||| |||| ||||||| |||||||||||||||||||||| ||||    
T  3772599 gcatatcaaatgagaggttttttattgtgagagatgagagggtta 3772643  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 13784936 - 13784876
Alignment:
Q  48 ttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaa 108  Q
    |||||||||||||||||||||  ||||   | |||| |||||||||| |||||||||||||    
T  13784936 ttttattgtgagagatgagaggattaaaccataacctttggatcaattttaacggttcaaa 13784876  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Original strand, 23902775 - 23902835
Alignment:
Q  48 ttttattgtgagagatgagagtgttaagttacaacccttggatcaatcttaacggttcaaa 108  Q
    |||||||||||||||||||||  ||||   | |||| |||||||||| |||||||||||||    
T  23902775 ttttattgtgagagatgagaggattaaaccataacctttggatcaattttaacggttcaaa 23902835  T

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