View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_high_1 (Length: 807)
Name: NF16661_high_1
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 670; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 670; E-Value: 0
Query Start/End: Original strand, 3 - 790
Target Start/End: Complemental strand, 834948 - 834159
Alignment:
| Q |
3 |
gtgcactaagaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaataatagtatatgctaaagttgacaaataaatcaaagggaatgt |
102 |
Q |
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| T |
834948 |
gtgcactaagaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaata---gtatatgctaaagttgacaaataaatcaaagggaatgt |
834852 |
T |
|
| Q |
103 |
gattgaattgaagaataaaaggagaaattaagaagcttt-----gtatatacctctaagtcttccttgttgtcctctcctttgcaatctgtatatatact |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
834851 |
gattgaattgaagaataaaaggagaaattaagaagctttaatttgtatatacctctaagtcttccttgttgtcctctcctttgcaatccgtatatatact |
834752 |
T |
|
| Q |
198 |
taacaatttcatcctgctccgtagcattgaatacaccggtgtgaagttcaagaccctgcagcaaatttatgtctctcccattgtttctttcaatgaaggt |
297 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
834751 |
cgacaatttcatcctgctccgtagcattgaaaacatcggtgtgaagttcaagaccctgcagcaaatttatgtctctcccattgattctttcaatgaaggt |
834652 |
T |
|
| Q |
298 |
aaaatcttttttgcattgaatttcagaat---aacggatatgctcctctcgctcttccgataactcatttttagatgaagaaacatccacagtttcatca |
394 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
834651 |
aaaatcttttttgcattgaatttcagaattataacggatatgctccttttgctcttccgataactcatttttagatgaagaaacatccacagttccatca |
834552 |
T |
|
| Q |
395 |
tttaacaataattcagtatcagactgcttgctttctttcagatatt---taattgaagaatcaaaattgggtttgttatccttcactgtgagagtagaat |
491 |
Q |
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| T |
834551 |
tttaacaataattcagtatcagactgcttgctttctttcagatattatttaattgaagaatcaaaattgggtttgttatccttcactgtgagagtagaat |
834452 |
T |
|
| Q |
492 |
catgtttttgtaaagagttccttggattgtacactattctaattcttttattcaaagattttgcaagtgaagcattgccattcatgtgcattgctcctcc |
591 |
Q |
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| T |
834451 |
catgtttttgtaaagagttccttggattgtacactattctaattcttttattcaaagattttgcaagtgaagcattgccattcatgtgtattgctcctcc |
834352 |
T |
|
| Q |
592 |
aatatctttcaagtctccaccgggatacaaattctcaccgtgttttcctacattctcatcgagagtagaatcatgttttagtgaagagtttattggactc |
691 |
Q |
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| T |
834351 |
aatatctttcaagtctccaccgggatacaaattctcaccgtgttttcctacattctcatcgagagtagaatcatgttttagtgaagagtttattggactc |
834252 |
T |
|
| Q |
692 |
ttcccctcttttctaactcttgtattcaaagattctgaatttgaacttgaaccgttaccattcatagacatgtatatttcatctccaatatcttcccat |
790 |
Q |
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| T |
834251 |
ttccccttttttctaactcttgtattcaaagattctgaattt------gaaccgttaccattcatagacatgtatatttcatctccaatatcttcccat |
834159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 813244 - 812987
Alignment:
| Q |
11 |
agaaggtgcaacaaacatggttacaaatatgaaataatgataaacaaaataatagtatatgctaaagttgacaaataaatcaaagggaatgtgattgaat |
110 |
Q |
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||||||||||||||||||| |||||||||||| |||||| |||||||| | ||||||| | ||||| ||||||||| |||||| | ||||||||||| |
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| T |
813244 |
agaaggtgcaacaaacatgagtacaaatatgaactaatgaaaaacaaaaaa---gtatatgttgaagttaacaaataaaccaaaggaattgtgattgaat |
813148 |
T |
|
| Q |
111 |
tgaagaataaaaggagaaattaagaagctttgtatatacctctaagtcttccttgttgtcctctcctttgcaatctgtatatatacttaacaatttcatc |
210 |
Q |
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| T |
813147 |
tgaagaataaa--gagaagataggaagttttgcatatacctctcagtcttccttgttgtcctctccgttgcaatatgtatatatagtcaacaatttcatt |
813050 |
T |
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| Q |
211 |
ctgctccgtagcattgaatacaccggtgtgaagttcaagaccctgcagcaaatttatgtctct |
273 |
Q |
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|||||||||||||||||| |||| | |||||||||||||||||| | ||||||||| ||||| |
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| T |
813049 |
ctgctccgtagcattgaagacactgctgtgaagttcaagaccctctaacaaatttatatctct |
812987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 737
Target Start/End: Complemental strand, 812791 - 812742
Alignment:
| Q |
688 |
actcttcccctcttttctaactcttgtattcaaagattctgaatttgaac |
737 |
Q |
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| T |
812791 |
actcttcccctcttttctaatccttttattccaagattctgaaattgaac |
812742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 464 - 515
Target Start/End: Original strand, 34881692 - 34881743
Alignment:
| Q |
464 |
ttgttatccttcactgtgagagtagaatcatgtttttgtaaagagttccttg |
515 |
Q |
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||||||||||||| ||||||| |||||||||||||||||| |||||| |||| |
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| T |
34881692 |
ttgttatccttcattgtgagaatagaatcatgtttttgtatagagtttcttg |
34881743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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