View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16661_high_11 (Length: 481)

Name: NF16661_high_11
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16661_high_11
NF16661_high_11
[»] chr7 (9 HSPs)
chr7 (20-134)||(21234584-21234704)
chr7 (127-270)||(21234256-21234400)
chr7 (393-476)||(21234098-21234181)
chr7 (286-362)||(21234190-21234268)
chr7 (383-448)||(6039306-6039371)
chr7 (386-459)||(14195760-14195833)
chr7 (375-471)||(6018358-6018454)
chr7 (375-454)||(3585523-3585602)
chr7 (383-440)||(5236875-5236932)
[»] chr5 (9 HSPs)
chr5 (376-459)||(18832234-18832317)
chr5 (383-471)||(23214834-23214922)
chr5 (383-422)||(20680628-20680667)
chr5 (375-454)||(26069266-26069345)
chr5 (385-471)||(17469569-17469655)
chr5 (394-440)||(24162031-24162077)
chr5 (384-458)||(29799057-29799131)
chr5 (383-440)||(29987988-29988045)
chr5 (419-471)||(24513231-24513283)
[»] chr4 (3 HSPs)
chr4 (383-471)||(18750824-18750912)
chr4 (375-454)||(9263351-9263430)
chr4 (375-459)||(23083712-23083796)
[»] chr6 (4 HSPs)
chr6 (384-454)||(17384040-17384110)
chr6 (383-468)||(22564558-22564643)
chr6 (375-471)||(9519732-9519828)
chr6 (394-454)||(14641649-14641709)
[»] scaffold0024 (1 HSPs)
scaffold0024 (394-471)||(41339-41416)
[»] chr8 (4 HSPs)
chr8 (375-416)||(30487896-30487937)
chr8 (394-471)||(13313291-13313368)
chr8 (394-471)||(30117678-30117755)
chr8 (383-471)||(24380362-24380450)
[»] chr2 (3 HSPs)
chr2 (381-454)||(23010050-23010123)
chr2 (383-459)||(17891743-17891819)
chr2 (385-459)||(35680111-35680185)
[»] chr1 (4 HSPs)
chr1 (381-454)||(24901226-24901299)
chr1 (383-471)||(22626163-22626251)
chr1 (384-426)||(26581618-26581660)
chr1 (386-459)||(21848638-21848711)
[»] scaffold0019 (1 HSPs)
scaffold0019 (386-454)||(35195-35263)
[»] chr3 (6 HSPs)
chr3 (386-452)||(19387871-19387937)
chr3 (394-471)||(3114729-3114806)
chr3 (383-452)||(22470411-22470480)
chr3 (394-454)||(8765691-8765751)
chr3 (394-454)||(8770581-8770641)
chr3 (395-471)||(18457132-18457208)
[»] scaffold0014 (1 HSPs)
scaffold0014 (383-440)||(192153-192210)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 21234704 - 21234584
Alignment:
Q  20 tgtatcatatgattgactcgagaatatattattgcttttgtgtggtg----tattaaatgattattatacttacttcgatctc--atatattttcccttg 113  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||    |||||| |||||| ||||||||||||||||||  |||||||||||||||    
T  21234704 tgtatcatatgattgactcgaggatatattattgcttttgtgtgatgtatttattaattgattagtatacttacttcgatctcatatatattttcccttg 21234605  T
Q  114 tattttgccctttattagata 134  Q
    |||||||||||||||||||||    
T  21234604 tattttgccctttattagata 21234584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 127 - 270
Target Start/End: Complemental strand, 21234400 - 21234256
Alignment:
Q  127 attagatattgtcgaggaagagtcggtgacaatagatggagtacttcctttcattccttttacaactaacc----atagacgtatcattgtcagtgatgt 222  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||    |||||||| ||||||||| ||||||    
T  21234400 attagatattgtcgaggaatagtcggtgacaatagatggagtacttcatttcattcattttacaactaaccatatatagacgtgtcattgtcactgatgt 21234301  T
Q  223 ggatgatttt-ttgattatgatcaatctatgttttgaaatcatttattt 270  Q
     ||| ||||| | ||| |||    |||||| ||||||||||||||||||    
T  21234300 agataattttctcgatgatg----atctatcttttgaaatcatttattt 21234256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 393 - 476
Target Start/End: Complemental strand, 21234181 - 21234098
Alignment:
Q  393 attatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagagaatttgcctatgcttct 476  Q
    |||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||| |||||||||| ||||| ||||    
T  21234181 attatttttagcatgttattcagtcatttttaataggttttaccagcataacagaggagtattagagaatttgtctatgattct 21234098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 286 - 362
Target Start/End: Complemental strand, 21234268 - 21234190
Alignment:
Q  286 aaatcatttatt--gattctttagatgtatgacta-tttaattggtaattggtttcatgtgtactgcactatgtactttg 362  Q
    ||||||||||||  ||||||||||||||||||||| ||||||||| | ||||||||||||||| ||||| ||||||||||    
T  21234268 aaatcatttattttgattctttagatgtatgactaatttaattgg-atttggtttcatgtgtagtgcaccatgtactttg 21234190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 448
Target Start/End: Original strand, 6039306 - 6039371
Alignment:
Q  383 gtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagag 448  Q
    ||||||||| |||||| ||| |||||| |||||| ||||||| ||||||||| |||||||||||||    
T  6039306 gtcatcttacattattcttaacatgtttttcagtcattttcagtagattttaccagcataacagag 6039371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 459
Target Start/End: Complemental strand, 14195833 - 14195760
Alignment:
Q  386 atcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagag 459  Q
    ||||||| ||||| |||||||||| |||||| ||||| | ||| ||||| ||||| ||||||||||||| ||||    
T  14195833 atcttatgttattcttagcatgtttttcagtcatttttagtaggttttaccagcaaaacagaggagtattagag 14195760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 471
Target Start/End: Complemental strand, 6018454 - 6018358
Alignment:
Q  375 gatgataagtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagagaatttgcctatg 471  Q
    ||||||| |||||||||| |||||||||||||||| ||||||   ||| | ||| ||||| || || ||||||||||||| |||  | |||||||||    
T  6018454 gatgatatgtcatcttatgttatttttagcatgtttttcagtcgattttagtaggttttaccaacaaaacagaggagtattagattaattgcctatg 6018358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 3585523 - 3585602
Alignment:
Q  375 gatgataagtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtat 454  Q
    ||||| ||||||||||| |||||| |||||||||| |||| | ||||||| ||| ||||| ||||| ||  |||||||||    
T  3585523 gatgacaagtcatcttacattattcttagcatgtttttcaatcattttcagtaggttttagcagcaaaatggaggagtat 3585602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 5236875 - 5236932
Alignment:
Q  383 gtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagca 440  Q
    |||||||||  ||||| |||||||||| |||||||||||||| ||| ||||| |||||    
T  5236875 gtcatcttacgttattcttagcatgtttttcagttattttcagtaggttttagcagca 5236932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 376 - 459
Target Start/End: Complemental strand, 18832317 - 18832234
Alignment:
Q  376 atgataagtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagag 459  Q
    |||||| ||||||||| ||||||||||||||||| ||||||  |||||||||| ||||| || || ||||||||||||| ||||    
T  18832317 atgataggtcatcttacattatttttagcatgtttttcagtctttttcaataggttttaccaacaaaacagaggagtattagag 18832234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 471
Target Start/End: Original strand, 23214834 - 23214922
Alignment:
Q  383 gtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagagaatttgcctatg 471  Q
    |||||||||  ||||| |||||||||| ||||||||||||||||| | |||| || || ||  ||||||||| |||||| |||||||||    
T  23214834 gtcatcttacgttattcttagcatgtttttcagttattttcaatacagtttagcaacaaaaaggaggagtatgagagaaattgcctatg 23214922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 422
Target Start/End: Complemental strand, 20680667 - 20680628
Alignment:
Q  383 gtcatcttatattatttttagcatgttattcagttatttt 422  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  20680667 gtcatcttatattatttttagcatgttttttagttatttt 20680628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 454
Target Start/End: Complemental strand, 26069345 - 26069266
Alignment:
Q  375 gatgataagtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtat 454  Q
    ||||| |||| ||||||  ||||| ||| |||||| || ||| ||||||| ||||||||| ||||| |||||||||||||    
T  26069345 gatgacaagttatcttacgttattcttaacatgttttttagtcattttcagtagattttaccagcagaacagaggagtat 26069266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 471
Target Start/End: Original strand, 17469569 - 17469655
Alignment:
Q  385 catcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagagaatttgcctatg 471  Q
    |||||||  ||||| |||||||||| |||| | |||||||  || ||||| ||||| ||||||||||||| |||| | |||||||||    
T  17469569 catcttacgttattcttagcatgtttttcaatcattttcagcaggttttaccagcaaaacagaggagtattagagcaattgcctatg 17469655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 440
Target Start/End: Original strand, 24162031 - 24162077
Alignment:
Q  394 ttatttttagcatgttattcagttattttcaatagattttatcagca 440  Q
    ||||| |||||||||| |||||| ||||||||||||||||| |||||    
T  24162031 ttattcttagcatgtttttcagtcattttcaatagattttaccagca 24162077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 458
Target Start/End: Complemental strand, 29799131 - 29799057
Alignment:
Q  384 tcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataaga 458  Q
    ||||||||||||||| |||| ||||| || ||| ||||| ||||| || || ||||| || ||||||||||||||    
T  29799131 tcatcttatattattcttagtatgttttttagtcatttttaataggttctaccagcaaaatagaggagtataaga 29799057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 29988045 - 29987988
Alignment:
Q  383 gtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagca 440  Q
    |||||||||  |||||||||||||||| |||||| ||||| | ||||||||| |||||    
T  29988045 gtcatcttacgttatttttagcatgtttttcagtcatttttagtagattttagcagca 29987988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 471
Target Start/End: Original strand, 24513231 - 24513283
Alignment:
Q  419 ttttcaatagattttatcagcataacagaggagtataagagaatttgcctatg 471  Q
    |||||| ||||||| | ||||| || |||||||||| ||||||||||||||||    
T  24513231 ttttcagtagatttcagcagcaaaaaagaggagtattagagaatttgcctatg 24513283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 383 - 471
Target Start/End: Complemental strand, 18750912 - 18750824
Alignment:
Q  383 gtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagagaatttgcctatg 471  Q
    ||||||||| |||||||||||||| || |||||||||||||| |||  |||| ||||| ||  ||||||||| |||| | |||||||||    
T  18750912 gtcatcttacattatttttagcatatttttcagttattttcagtagggtttagcagcaaaaaggaggagtattagagcaattgcctatg 18750824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 9263351 - 9263430
Alignment:
Q  375 gatgataagtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtat 454  Q
    ||||||| || ||||||  |||||||||||||||| |||||| |  |||||||| ||||||||||| ||| |||||||||    
T  9263351 gatgataggttatcttacgttatttttagcatgtttttcagtcaaattcaataggttttatcagcagaactgaggagtat 9263430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 459
Target Start/End: Complemental strand, 23083796 - 23083712
Alignment:
Q  375 gatgataagtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagag 459  Q
    ||||||||| |||||||| ||||  |||||||||| ||||| |||||||||||  |||||  |||| || |||||||||| ||||    
T  23083796 gatgataagccatcttatgttatacttagcatgtttttcagctattttcaatatgttttaaaagcagaatagaggagtattagag 23083712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 454
Target Start/End: Complemental strand, 17384110 - 17384040
Alignment:
Q  384 tcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtat 454  Q
    |||||||| |||||| |||||||||| |||||||||||||| ||| ||||| ||||| ||  |||||||||    
T  17384110 tcatcttacattattcttagcatgtttttcagttattttcattaggttttagcagcaaaaaggaggagtat 17384040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 468
Target Start/End: Original strand, 22564558 - 22564643
Alignment:
Q  383 gtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagagaatttgcct 468  Q
    |||||||||  ||||| |||||||||| |||||| ||||| | ||| ||||| ||||| ||||||||||||| |||| | ||||||    
T  22564558 gtcatcttacgttattcttagcatgtttttcagtcatttttagtaggttttaccagcaaaacagaggagtattagagcaattgcct 22564643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 471
Target Start/End: Complemental strand, 9519828 - 9519732
Alignment:
Q  375 gatgataagtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagagaatttgcctatg 471  Q
    ||||| || ||||||||  |||||||||||||||| || ||||||||||| |||  |||| ||||| ||  ||||||||| |||| | |||||||||    
T  9519828 gatgacaattcatcttacgttatttttagcatgttttttagttattttcagtagtatttagcagcaaaaaggaggagtattagagcaattgcctatg 9519732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 14641709 - 14641649
Alignment:
Q  394 ttatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtat 454  Q
    ||||| |||||||||| |||||||||||||| ||| ||||| ||||| ||  |||||||||    
T  14641709 ttattcttagcatgtttttcagttattttcagtaggttttagcagcaaaaaggaggagtat 14641649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 471
Target Start/End: Complemental strand, 41416 - 41339
Alignment:
Q  394 ttatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagagaatttgcctatg 471  Q
    ||||| |||||||||| |||||||||||| | ||| ||||| ||||| ||||||||||||| |||  | |||||||||    
T  41416 ttattcttagcatgtttttcagttatttttagtaggttttaccagcaaaacagaggagtattagatcaattgcctatg 41339  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 30487937 - 30487896
Alignment:
Q  375 gatgataagtcatcttatattatttttagcatgttattcagt 416  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  30487937 gatgataagtcatcttatattattttcagcatgtttttcagt 30487896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 471
Target Start/End: Original strand, 13313291 - 13313368
Alignment:
Q  394 ttatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagagaatttgcctatg 471  Q
    ||||| |||||||||| |||||| ||||||||||| ||||| ||||| ||  ||||||||| |||  | |||||||||    
T  13313291 ttattcttagcatgtttttcagtcattttcaataggttttagcagcaaaaaggaggagtattagaacaattgcctatg 13313368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 471
Target Start/End: Original strand, 30117678 - 30117755
Alignment:
Q  394 ttatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagagaatttgcctatg 471  Q
    |||||||||||||||| |||| | ||||||| ||| ||||| ||||| |||| |||| ||| |||||| ||| |||||    
T  30117678 ttatttttagcatgtttttcattcattttcagtaggttttaccagcaaaacataggaatattagagaaattgtctatg 30117755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 471
Target Start/End: Original strand, 24380362 - 24380450
Alignment:
Q  383 gtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagagaatttgcctatg 471  Q
    |||||||||  ||||| |||||||||| |||| | | ||||| ||| ||||| ||||| ||||||||||||| |||  | |||||||||    
T  24380362 gtcatcttacgttattcttagcatgtttttcactcaatttcagtaggttttaccagcagaacagaggagtattagaacaattgcctatg 24380450  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 454
Target Start/End: Original strand, 23010050 - 23010123
Alignment:
Q  381 aagtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtat 454  Q
    |||||||||||  ||||| |||||||||| |||||| ||||||||||| ||||| ||||| |||  ||||||||    
T  23010050 aagtcatcttacgttattcttagcatgtttttcagtcattttcaataggttttaccagcaaaacgaaggagtat 23010123  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 459
Target Start/End: Complemental strand, 17891819 - 17891743
Alignment:
Q  383 gtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagag 459  Q
    |||||||||  ||||| ||| |||||| |||||| ||||||| ||| ||||| ||||| ||||||||||||| ||||    
T  17891819 gtcatcttacgttattcttaacatgtttttcagtcattttcagtaggttttaccagcaaaacagaggagtattagag 17891743  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 459
Target Start/End: Original strand, 35680111 - 35680185
Alignment:
Q  385 catcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagag 459  Q
    |||||||  ||||| |||||||||| || ||| ||||||| ||| ||||| ||||| ||||||||||||| ||||    
T  35680111 catcttacgttattcttagcatgtttttaagtcattttcagtaggttttaccagcaaaacagaggagtattagag 35680185  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 454
Target Start/End: Complemental strand, 24901299 - 24901226
Alignment:
Q  381 aagtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtat 454  Q
    |||||||||||  ||||||||||||| || |||| | ||||||| ||||||||| ||||| ||||||| |||||    
T  24901299 aagtcatcttacgttatttttagcatatttttcaatcattttcagtagattttaccagcaaaacagagaagtat 24901226  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 383 - 471
Target Start/End: Original strand, 22626163 - 22626251
Alignment:
Q  383 gtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagagaatttgcctatg 471  Q
    |||||||||  ||||| |||||||||| || | || |||| | ||| ||||| ||||| ||||||||||||| ||||||||| ||||||    
T  22626163 gtcatcttacgttattcttagcatgtttttgaattttttttagtagcttttaccagcaaaacagaggagtattagagaatttacctatg 22626251  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 26581660 - 26581618
Alignment:
Q  384 tcatcttatattatttttagcatgttattcagttattttcaat 426  Q
    |||||||| |||||| |||||||||| ||||||||||||||||    
T  26581660 tcatcttacattattcttagcatgtttttcagttattttcaat 26581618  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 459
Target Start/End: Complemental strand, 21848711 - 21848638
Alignment:
Q  386 atcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagag 459  Q
    ||||||| ||||| |||||||||| ||||||  |||| ||||| | |||| |||| ||||||||||||| ||||    
T  21848711 atcttatgttattcttagcatgtttttcagtcgtttttaataggtgttattagcaaaacagaggagtattagag 21848638  T

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Target: scaffold0019 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 454
Target Start/End: Complemental strand, 35263 - 35195
Alignment:
Q  386 atcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtat 454  Q
    ||||||| ||||| |||||||||| |||||| ||||||||||| ||||||   ||||| ||||||||||    
T  35263 atcttatgttattcttagcatgtttttcagtcattttcaataggttttatatccataatagaggagtat 35195  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 452
Target Start/End: Original strand, 19387871 - 19387937
Alignment:
Q  386 atcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagt 452  Q
    ||||||| ||||||||||| |||| |||||| ||||||| ||| ||||| ||||| || ||||||||    
T  19387871 atcttatgttatttttagcttgtttttcagtcattttcagtaggttttaccagcaaaatagaggagt 19387937  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 471
Target Start/End: Original strand, 3114729 - 3114806
Alignment:
Q  394 ttatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagagaatttgcctatg 471  Q
    ||||| |||||||||| ||||||  ||| || ||| ||||| ||||| ||||||||||||| |||| | |||||||||    
T  3114729 ttattcttagcatgtttttcagtcttttacagtaggttttaccagcaaaacagaggagtattagagtaattgcctatg 3114806  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 452
Target Start/End: Original strand, 22470411 - 22470480
Alignment:
Q  383 gtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagt 452  Q
    |||||||||  ||||| |||||||||| |||||| ||||||| ||  ||||| ||||| |||||||||||    
T  22470411 gtcatcttacgttattcttagcatgtttttcagtcattttcagtatgttttaccagcaaaacagaggagt 22470480  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 8765751 - 8765691
Alignment:
Q  394 ttatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtat 454  Q
    ||||| |||||||||| |||||| ||||||||||| ||||| | ||| || ||||||||||    
T  8765751 ttattcttagcatgtttttcagtcattttcaataggttttagctgcaaaaaagaggagtat 8765691  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 394 - 454
Target Start/End: Complemental strand, 8770641 - 8770581
Alignment:
Q  394 ttatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtat 454  Q
    ||||| |||||||||| |||||| ||||||||||| ||||| | ||| || ||||||||||    
T  8770641 ttattcttagcatgtttttcagtcattttcaataggttttagctgcaaaaaagaggagtat 8770581  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 471
Target Start/End: Original strand, 18457132 - 18457208
Alignment:
Q  395 tatttttagcatgttattcagttattttcaatagattttatcagcataacagaggagtataagagaatttgcctatg 471  Q
    |||| |||| |||||||||||||||||||| ||| ||||| ||||| ||  ||||||||| |||  | |||||||||    
T  18457132 tattcttaggatgttattcagttattttcagtaggttttagcagcaaaaaggaggagtattagaacaattgcctatg 18457208  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 192210 - 192153
Alignment:
Q  383 gtcatcttatattatttttagcatgttattcagttattttcaatagattttatcagca 440  Q
    |||||||||  |||||||||||||| | |||||| ||||||||||| ||||| |||||    
T  192210 gtcatcttacgttatttttagcatggttttcagtcattttcaataggttttagcagca 192153  T

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