View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16661_high_13 (Length: 450)
Name: NF16661_high_13
Description: NF16661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16661_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 2515927 - 2515544
Alignment:
| Q |
20 |
ccaaccacacaacatgcaacactttccgagttgattttgagaagccgcctaaagcactgaagtgaagtatatgatcaatcaaacttagagggttcactta |
119 |
Q |
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| T |
2515927 |
ccaaccacacaacatgcaacactttccgagttgattttgagaagctgcctaaagc--------------tgtgatcaatcaaacttagagggttcactta |
2515842 |
T |
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| Q |
120 |
aataatactcatccattgccgaagtaatgttcaaagagatccnnnnnnnccagattcaaaaaataaatgattcacattttctgttgcatcaaaatcctgt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2515841 |
aataatactcatccattgccgaagtaatgttcaaagagatctaagaaaaccaaattcaaaaaataaatgattcacattttctgttgcatcaacatcctgt |
2515742 |
T |
|
| Q |
220 |
aagacaaacattctaattttgctgaagaattccacgcttaaccaggttatccgttgtaggtaactggttttgaagaagacgccgcacaaaaataaacaca |
319 |
Q |
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|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
2515741 |
aacacaaacattttaattttgctgaagaattccacgcttaaccaggttatccgttgtaggtaaccgattttgaagaagacgccgcacaaaaataaacaca |
2515642 |
T |
|
| Q |
320 |
ttcgaaggaaacactttgtttcaaataatttcatgtaactcactccaagtatttggttccgcctcagttaacatctgataaactcttataaccttgta |
417 |
Q |
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| T |
2515641 |
ttcgaaggaaacactttgtttcaaataatttcatgtaactcactccaagtatttagtttcgcctcaattaacatctgataaactcttataaccgtgta |
2515544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 402
Target Start/End: Original strand, 7129703 - 7130077
Alignment:
| Q |
24 |
ccacacaacatgcaacactttccgagttgattttgagaagccgcctaaagcactgaagtgaagtatatgatcaatcaaacttagagggttcacttaaata |
123 |
Q |
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| T |
7129703 |
ccacaaaacatgcaacacattccaaacagattttgagaagccgcccaaagcaccgaagtgaagaccatgatcaatcaaacttagagggttcactgaaaaa |
7129802 |
T |
|
| Q |
124 |
atactcatccattgccgaagtaatgttcaaagagatccnnnnnnnccagattcaaaaaataaatgattcacattttctgttgcatcaaaatcctgtaaga |
223 |
Q |
| |
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|||| |||||||||||||||||| ||||||| ||| || || ||||||||||||||||||||||| |||| || ||| || | |
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| T |
7129803 |
ataccaatccattgccgaagtaatagccaaagagttccaaagaagtcacatctcaaaaataaatgattcacattttc---tgcaacaccgccctacaaca |
7129899 |
T |
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| Q |
224 |
caaacattctaattttgctgaagaattccacgcttaaccaggttatccgttgtaggtaactggttttgaagaagacgccgcacaaaaataaacacattcg |
323 |
Q |
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||||||||| ||||||| |||||||||| || |||||| || |||||| |||||| | | ||| | |||||| |||| |||||||| | |||| ||| |
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| T |
7129900 |
caaacattcaaattttgttgaagaattctacacttaacgagattatcctttgtagaaatttagttctaaagaagtcgccacacaaaaa-agacaccttca |
7129998 |
T |
|
| Q |
324 |
aaggaaacactttgtttcaaataatttcatgtaactcactccaagtatttggttccgcctcagttaacatctgataaac |
402 |
Q |
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| T |
7129999 |
agggaaatgatttgttcaaaataatttcatgtaattcacgtcgagtatttggttttgcctcgtttaatatcagataaac |
7130077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 402
Target Start/End: Complemental strand, 12670502 - 12670467
Alignment:
| Q |
367 |
agtatttggttccgcctcagttaacatctgataaac |
402 |
Q |
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| T |
12670502 |
agtatttggttccacctcagttaacatctgataaac |
12670467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 37756377 - 37756423
Alignment:
| Q |
90 |
atgatcaatcaaacttagagggttcacttaaataatactcatccatt |
136 |
Q |
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| T |
37756377 |
atgatcaatcaaacttggaggattcactaacataatactcatccatt |
37756423 |
T |
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